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Commit 41b500d1 authored by Kseniia Dukkart's avatar Kseniia Dukkart
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Merge branch 'Request/9039f682-db41-4da5-8f25-9bc9a32cf08b' into 'master' 

Merge request for new application profile: GHGA

See merge request !435
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1 merge request!435Merge request for new application profile: GHGA
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@base <https://purl.org/coscine/ap/ghga/genome-data-hub/>.
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>.
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>.
@prefix xsd: <http://www.w3.org/2001/XMLSchema#>.
@prefix dcterms: <http://purl.org/dc/terms/>.
@prefix sh: <http://www.w3.org/ns/shacl#>.
@prefix vocabterms: <https://purl.org/coscine/terms/>.
@prefix aps: <https://purl.org/coscine/ap/>.
@prefix dbo: <http://dbpedia.org/ontology/> .
@prefix schema: <http://schema.org/> .
<https://purl.org/coscine/ap/ghga/genome-data-hub/> dcterms:created "2024-12-13"^^xsd:date;
dcterms:creator "Dr. Roderick Dedekind";
dcterms:description "Metadatenprofil zu den verschlüsselten Genomdaten im Rahmen der Cologne Genome Data Hub Unterprojekte: Deutsches Humangenom-Phaenomarchiv (GHGA) und Modellvorhaben GenomSequenzierung (MVGenomSeq, MV)"@de,
"Metadata profile for encrypted genomic data as part of the Cologne Genome Data Hub Subprojects: German Human Genome-Phenome Archive (GHGA) and model project Genome Sequencing (MVGenomSeq, MV)"@en;
dcterms:license <http://spdx.org/licenses/CC0-1.0>;
dcterms:subject <https://github.com/tibonto/dfgfo/205-07>;
dcterms:title "Cologne Genome Data Hub"@de,
"Cologne Genome Data Hub"@en;
a rdfs:Class,
sh:NodeShape;
sh:closed false;
sh:property [sh:datatype xsd:string ;
sh:minCount 1 ;
sh:name "Repo"@en ;
sh:order 1 ;
sh:path <https://purl.org/coscine/terms/d2b4efc1-22f7-4f9a-8e4d-b5657da68bc4/> ;
sh:description "Repository the file belongs to, e.g. GHGA, MV"@en ],
[sh:datatype xsd:string ;
sh:minCount 1 ;
sh:name "Study"@en ;
sh:order 2 ;
sh:path schema:study ;
sh:description "Title of the Study"@en ;
sh:maxCount 1 ],
[sh:path <http://www.ontologyrepository.com/CommonCoreOntologies/has_URI_value> ;
sh:datatype xsd:anyURI ;
sh:order 9 ;
sh:name "URI"@en ;
sh:description "Uniform Resource Identifier in S3 "@en ;
sh:minCount 1 ;
sh:maxCount 1 ],
[sh:path <https://saref.etsi.org/saref4inma/hasUUIDValue> ;
sh:datatype xsd:hexBinary ;
sh:order 10 ;
sh:name "UUID"@en ;
sh:description "Universally Unique Identifier for stored object"@en ;
sh:minCount 1 ;
sh:maxCount 1 ],
[sh:path <https://purl.org/coscine/terms/22b0c322-97cd-41a5-8a57-a4b7a0c4a288/> ;
sh:datatype xsd:string ;
sh:order 11 ;
sh:name "Checksum"@en ;
sh:minCount 1 ;
sh:maxCount 1 ],
[sh:path <https://purl.org/coscine/terms/c262f4f1-2949-411a-b7d9-64985a87b356/> ;
sh:datatype xsd:string ;
sh:order 12 ;
sh:name "Checksum type"@en ;
sh:description "Algorithm used to generate the checksum (md5, sha256)"@en ;
sh:minCount 1 ;
sh:maxCount 1 ],
[sh:path <https://purl.org/coscine/terms/d7a86fee-64ac-4520-9b86-b7b902425acd/> ;
sh:datatype xsd:string ;
sh:order 13 ;
sh:name "DAC"@en ;
sh:description "Data Access Committee, e.g. dac@uni-koeln.de"@en ;
sh:minCount 1 ],
[sh:path <http://www.geneontology.org/formats/oboInOwl#submitter> ;
sh:datatype xsd:string ;
sh:order 3 ;
sh:description "Name of the institution of origin"@en, "Name der Herkunftsinstitution "@de ;
sh:name "Submitter"@en ;
sh:minCount 1 ;
sh:maxCount 1 ],
[sh:datatype xsd:date ;
sh:minCount 1 ;
sh:name "Submission Date"@en ;
sh:order 4 ;
sh:path dcterms:date ;
sh:maxCount 1 ],
[sh:datatype xsd:string ;
sh:minCount 1 ;
sh:name "Application"@en ;
sh:order 5 ;
sh:path <https://purl.org/coscine/terms/44966765-5228-4da5-b72f-fdcdc2334dff/> ;
sh:description "Sequencing Application used, e.g. WGS"@en ;
sh:maxCount 1 ],
[sh:datatype xsd:string ;
sh:minCount 1 ;
sh:name "Individual ID"@en ;
sh:order 6 ;
sh:path <https://purl.org/coscine/terms/b9816141-3f4b-4aaa-a607-0140920f1ced/> ;
sh:description "ID of the patient"@en ;
sh:maxCount 1 ],
[sh:datatype xsd:string ;
sh:minCount 1 ;
sh:name "Filename"@en ;
sh:order 7 ;
sh:path dbo:filename ;
sh:description "Original Filename as submitted"@en ;
sh:maxCount 1 ],
[sh:datatype xsd:string ;
sh:minCount 1 ;
sh:name "File Type"@en ;
sh:order 8 ;
sh:path <https://purl.org/coscine/terms/bc325b84-46b8-40fd-8dde-88e8a2eee44c/> ;
sh:description "File format, e.g. FASTQ, BAM, VCF"@en ;
sh:maxCount 1 ],
[sh:path <https://purl.org/coscine/terms/d1158ab0-dc7c-4c8c-9a98-d5cbef9e6ded/> ;
sh:order 14 ;
sh:name "Status GHGA"@de ;
sh:name "Status GHGA"@en ;
sh:description "Availability status of the file within GHGA"@en ;
sh:minCount 1 ;
sh:maxCount 1 ;
sh:in ("active" "inactive" "retracted" "locked" "deleted")],
[sh:path <https://purl.org/coscine/terms/c23730f6-d5a7-4768-a59c-afc8fa8ce330/> ;
sh:order 15 ;
sh:name "Status MV"@de ;
sh:name "Status MV"@en ;
sh:description "Availability status of the file within MVGenomSeq"@en ;
sh:minCount 1 ;
sh:maxCount 1 ;
sh:in ("active" "inactive" "retracted" "locked" "deleted")].
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