updated mkdocs file with mermaid and mkdoxy

docs/documentation/aircraft-design.md

+# Sizing and analysizing!
+Yoho $M = \frac{2}{5}$
+
+!!! tip
+
+
+!!! danger
+
+
+```mermaid
+  graph LR;
+  A-->B
+```

docs/documentation/sizing.md

@@ -100,7 +100,7 @@ Also the mass properties are analyzed.
 
 |Module Version|Language|License|Documentation|
 |:---:|:---:|:---:|---|
-|3.0.0|:simple-cplusplus: |GPLv3|[Link](propulsion_design/index.html)|
+|3.0.0|:simple-cplusplus: |GPLv3|[Link](propulsion_design/content/index.md)|
 
 ---
 

mkdocs.yml

@@ -36,7 +36,11 @@ markdown_extensions:
       line_spans: __span                  # Adds spans around lines for custom styling.
       pygments_lang_class: true           # Adds language class to highlighted code for styling consistency.
   - pymdownx.details                      # Enables collapsible details/summary blocks for content hiding/showing.
-  - pymdownx.superfences                  # Adds advanced fence syntax for blocks like code or tabs.
+  - pymdownx.superfences:                 # Adds advanced fence syntax for blocks like code or tabs.
+      custom_fences:
+        - name: mermaid
+          class: mermaid
+          format: !!python/name:pymdownx.superfences.fence_code_format
   - pymdownx.inlinehilite                 # Allows inline code highlighting within text.
   - pymdownx.snippets                     # Enables code snippets for reusing code blocks across pages.
   - pymdownx.critic                       # Adds Critic Markup support for collaborative editing.
@@ -58,8 +62,20 @@ extra_css:
 
 # === Plugins ===
 plugins:
+  - search
+  - mkdoxy:
+      projects:
+        propulsion_design:
+          src-dirs: ../aircraft-design/propulsion_design/
+          full-doc: True
+          output: docs/propulsion_design
+          doxy-cfg:
+            FILE_PATTERNS: "*cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
   - glightbox                             # Plugin for lightbox-style image and content viewing.
 
+
 # === Theme configuration ===
 theme:
   name: material                          # Specifies the theme name (alternatives: material, mkdocs, readthedocs).
@@ -68,9 +84,18 @@ theme:
   custom_dir: overrides                      # Directory for custom files (like footer).
   # Theme colors configuration
   palette:
-    scheme: slate                         # Sets a dark theme style.
-    primary: blue grey                    # Main color of the theme (used for buttons, links, etc.).
-    accent: red                          # Accent color for highlights.
+   - scheme: default
+     toggle:
+       icon: material/brightness-7
+       name: Switch to dark mode
+     primary: blue grey
+     accent: red
+   - scheme: slate
+     toggle:
+       icon: material/brightness-3
+       name: Switch to light mode
+     primary: green
+     accent: red
 
   # Feature configurations for navigation and ToC behavior
   features:
@@ -98,9 +123,27 @@ nav:                                      # Customizes the main navigation struc
       - Seperate Tool Execution: 'tutorials/seperate-tool-execution.md'  # Link to the separate tool execution tutorial page.
   - Documentation:                        # Top-level item for documentation.
       - Overview: 'documentation/overview.md'   # Overview of modules.
-      - Aircraft Design:                  # Subsection for Aircraft Design.
-          - 'documentation/sizing.md'           # Link to sizing module page.
-          - 'documentation/analysis.md'         # Link to analysis module page.
+      - Aircraft Design:
+          - Introduction: documentation/aircraft-design.md                   # Subsection for Aircraft Design.
+          - Sizing:
+            - Modules: documentation/sizing.md
+            - Propulsion Design:
+              - documentation/propulsion_design/content/index.md
+              - documentation/propulsion_design/content/engineeringprinciples.md
+              - documentation/propulsion_design/content/getting-started.md
+              - documentation/propulsion_design/content/softwarearchitecture.md
+              - Tutorial:
+                - documentation/propulsion_design/content/tutorial.md
+                - documentation/propulsion_design/content/tutorial_engine_extension.md
+                - documentation/propulsion_design/content/tutorial_fidelity_extension.md
+              - Additional: documentation/propulsion_design/content/additional.md
+              - API Reference:
+                - propulsion_design/classes.md
+                - propulsion_design/namespaces.md
+                - propulsion_design/files.md
+                - propulsion_design/pages.md
+          - Analsysis:
+            - Modules: 'documentation/analysis.md'         # Link to analysis module page.
       - Libraries: 'documentation/libraries.md' # Link to libraries overview.
       - Utilities: 'documentation/additional-software.md'  # Link to additional software page.
       - Workflow: 'workflow.md'           # Link to the workflow page.