Fixed an error related to index table instead of structure. (publish/fileCompare)

Omitted status variable in publish because idx is carrying the array of statuses and is more useful. Removed some comments from try/catch. Minor Spelling.

fcn_core/Publish.m

@@ -51,7 +51,7 @@ end
 %% Research data handeling
 switch options.Method
     case 'centraliced' % Work in progresss!!!
-        %check if data folder exists
+        % check if data folder exists
         if ~isfolder(fullfile(storPath,'data'))
             mkdir(fullfile(storPath,'data'));
         end
@@ -64,10 +64,13 @@ switch options.Method
             % copy the data(once)
         for i=1:numel(DataPaths.rdata)            
             % check if identical file exists (status = 1)
-            [status, idx] = fileCompare(DataPaths.rdata{i},fList);
-            if status
-               sourcePath = fList.name{idx};
-               createLinkedHDF5(sourcePath,storPath,ID);
+            [~, idx] = fileCompare(DataPaths.rdata{i},fList);
+            % create Linked HDF5 files for identical files
+            if any(idx)
+            sourcePath = fList.name{idx}; % If there are multiple copies already, this only picks the last entry
+            if contains(sourcePath,{'.h5','.hdf5'}) % Linking only for HDF5
+                createLinkedHDF5(sourcePath,storPath,ID);
+            end
             else % no identical file exists
                createFileCopy(DataPaths.rdata{i},'data',storPath,ID,'dataCentral');
             end
@@ -77,7 +80,7 @@ switch options.Method
         createFileCopy(DataPaths.rdata,folderName,storPath,ID, 'data');
 end
 %% Export the Plots
-%try 
+try 
    for i=1:numel(figures)
        fig = figures(i);
        PlotName = [ID,'_plot',num2str(i)]; % Der Plotnamen
@@ -87,9 +90,9 @@ end
        exportgraphics(fig,[RemotePath,'.png'],'Resolution',300);
        disp([num2str(i),' of ',num2str(numel(figures)),' figures exported']);
    end
-%catch 
-    %warning('Plot export was not sucessful')
-%end
+catch 
+    warning('Plot export was not successful')
+end
 
 disp(['publishing of ', ID , ' done']);