Skip to content
Snippets Groups Projects
Commit c7256d2d authored by Lemmer, Jan's avatar Lemmer, Jan
Browse files

Clean Up and additions

parent 6512031e
Branches
Tags V0.2-RC1
No related merge requests found
Pipeline #597783 failed
......@@ -38,7 +38,9 @@ testdata_2.h5
testdata2.h5
test_data.mat
export/*
PlotID_export/*
Examples/export/*
Examples/PlotID_export/*
unused*/*
# Octave session info
......@@ -46,3 +48,6 @@ octave-workspace
#logs
log.txt
# csvs
*.csv
......@@ -14,10 +14,10 @@ addpath('CI_files');
% clean up, if previous run failed
try
delete(['CI_files' filesep 'export' filesep '*']);
delete(['CI_files' filesep 'PlotID_export' filesep '*']);
delete(['CI_files' filesep '*.mat']);
delete(['CI_files' filesep '*.h5']);
rmdir(['CI_files' filesep 'export'],'s');
rmdir(['CI_files' filesep 'PlotID_export'],'s');
end
% initialise
......@@ -116,10 +116,10 @@ fclose(fid);
% final clean up
try
delete(['CI_files' filesep 'export' filesep '*']);
delete(['CI_files' filesep 'PlotID_export' filesep '*']);
delete(['CI_files' filesep '*.mat']);
delete(['CI_files' filesep '*.h5']);
rmdir(['CI_files' filesep 'export'],'s');
rmdir(['CI_files' filesep 'PlotID_export'],'s');
delete(fullfile('CI_files','CI_config.json'));
end
......
function [retVal] = fail_runner()
%RUNNER_TESTING testing function to test, if the runner is set up properly
retVal = 1; % test should fail !
fid = fopen(fullfile('log.txt'),'w');
txt = ['This is a test, Errorstate: ', num2str(retVal)];
fprintf(fid,txt);
fclose(fid);
end
function [retVal] = pass_runner()
%pass_runner testing function to test, if the runner is set up properly
retVal = 0; % test should succeed !
fid = fopen(fullfile('log.txt'),'w');
txt = ['This is a test, Errorstate: ', num2str(retVal)];
fprintf(fid,txt);
fclose(fid);
end
#!/bin/bash
#matlab -r "disp(['Current folder: ' pwd])"
matlab $@ -nodisplay -nodesktop -nosplash -logfile matlab_log.txt -r "default_test;exit(ans);"
exitstatus=$?
if [[ $exitstatus -eq '0' ]]
then
echo "matlab succeed. Exitstatus: $exitstatus"
exit $exitstatus
else
echo "matlab failed. Exitstatus: $exitstatus"
exit $exitstatus
fi
# runtest.ps1
$LOGFILE='CI_log.txt'
$wd = pwd;
$LOGFILE = $("$wd" + "\" + "$LOGFILE")
$CIfolder = "$wd" + "\" + "CI_files\"
# $MFILE='"C:\git\NFDI4ing\plot_ID_matlab\CI_files\runner_test.m"'
$arguments = "-nodesktop", "-nosplash","-minimize","-wait","-sd", "$wd", "-logfile", "$LOGFILE","-batch","CI_files\test_runner_STFS.m"
$Returnvalue = & 'C:\Program Files\MATLAB\R2021b\bin\matlab.exe' $arguments
#$CODE = $?
# Returnvalue doesnt get anything useful from matlab
# Write-Output($Returnvalue)
Write-Output(Get-Content($LOGFILE))
exit $CODE
%% Example Script
% This Script is meant to demonstrate the capabilities of the PlotID tool.
%% Clear Environment
clear; clc; close all;
addpath('CI_files'); % Test scripts
try
delete testdata2.h5;
end
%% Set ProjectID
% ProjectID can also be set in the config file
% Leave empty for using the ID from the config file
ProjectID = 'FST01';
%% Data
% Creating Random Data to use as data-file
x = linspace(0,7);
y = rand(1,100)+2;
dataset1 = 'test_data.mat';
% use absolute paths for good practise
dataset1 = fullfile(pwd, dataset1);
save(dataset1,'x','y');
% some data as .h5
x1 = linspace(0,2*pi);
y1 = sin(x1)+.5*sin(2*x1)+2;
% define file path & name
fpath = fullfile(pwd,"./testdata2.h5");
dataset2 = fullfile(pwd,'testdata2.h5');
% create hdf5 file and dataset > write data to hdf5 file / dataset
h5create(fpath, "/x1", size(x1), "Datatype", class(x1))
h5create(fpath, "/y1", size(y1), "Datatype", class(y1))
h5write(fpath, "/x1", x1)
h5write(fpath, "/y1", y1)
%% Plotting
% This is still part of a normal script to produce plots.
% Make sure to save each figure in a variable to pass to PlotID-functions.
fig(1) = figure;
set(gcf,'Units','centimeters','PaperUnits','centimeters','PaperSize',[9 7],...
'Position',[5 5 9 7]);
plot(x,y,'Color',0.5*[1 1 1]);
box off; hold on;
plot(x1,y1,'-k');
set(gca, 'TickDir', 'out', 'YLim', [0,4],'YTick',[0:1:4],'XLim',[0,6]);
%fstplt.setfiguresize('1/2ppt16:9');
%fstplt.pimpplot;
%% Example 1: single plot based on two data-sets
%% Tag the plot
% PlotID Implementation starts here.
% TagPlot adds a visible ID to the figure(s) and to the figures property
% 'Tag'
[fig, ID] = PlotID.TagPlot(fig, 'ProjectID', ProjectID);
%% Publishing
% Second part of plotID
% The functions needs the file location, the location of the data and the
% figure and can take several options.
path.script = mfilename('fullpath'); % filename of the m.script
% file names of the datasets
path.rdata = {dataset1,dataset2} ; % don't forget the extension
PlotID.Publish(path, ID, fig(1), 'Location', 'local' ,'Method','individual')
%% End
{
"Author": "Example Author",
"ProjectID": "AB01",
"ServerPath": "\\\\Server\\path\\folder"
}
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment