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feat: Adds --list and -p/--preset options for molr prepare

Ole Osterthun requested to merge presets into develop

A default presets.yaml is used to read presets from. A user defined file can be specified in the .molrrc in the section [presets] and the key "path_to_presets".

Argparse parser has been extended with manual checks to make -p/--presets mutually exclusive with -f/--functional and -b/--basis-set.

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