Added example_slurm_jobscript.sh

example_slurm_jobscript.sh

+#!/usr/bin/env zsh
+
+### Job name
+#SBATCH --job-name=benchmax
+
+### Output file name
+#SBATCH -o /work/gk809425/CAD_IFH_PH_PP_19-06-24_15:57/JOB.%A_%a.out
+
+### Error file
+#SBATCH -e /work/gk809425/CAD_IFH_PH_PP_19-06-24_15:57/JOB.%A_%a.err
+
+### Timelimit in hours:minutes:seconds
+#SBATCH -t 00:25:00
+
+### Memory per CPU
+#SBATCH --mem-per-cpu=5120M
+
+### Load the module system configuration, necessary to load dependent libraries
+source ~/load_environment
+
+### Change Directory to your working directory (binaries, etc)
+cd /work/gk809425/CAD_IFH_PH_PP_19-06-24_15:57
+
+### For Array Job striping - the slicesize is the number of jobs executed in a single slice (running process) in serial
+min=$SLURM_ARRAY_TASK_MIN
+max=$SLURM_ARRAY_TASK_MAX
+cur=$SLURM_ARRAY_TASK_ID
+slicesize=6
+start=$(( (cur - 1) * slicesize + 1 ))
+end=$(( start + slicesize - 1 ))
+for i in `seq ${start} ${end}`; do
+        cmd=$(time sed -n "${i}p" < /work/gk809425/CAD_IFH_PH_PP_19-06-24_15:57/jobs-1561695618-1.jobs)
+        echo "Executing $cmd"
+        echo "# START ${i} #"
+        echo "# START ${i} #" >&2
+        cat ${cmd} > /dev/null
+        start=`date +"%s%3N"`
+        ulimit -c 0 && ulimit -S -v 4194304 && ulimit -S -t 123 && eval time $cmd ; rc=$?
+        end=`date +"%s%3N"`
+        echo "# END ${i} #"
+        echo "# END ${i} #" 1>&2
+        echo "time: $(( end - start ))"
+        echo "exitcode: $rc"
+        echo "# END DATA ${i} #"
+done
+
+### Ulimit:
+###  -c 0: No core dumps (important!)
+###  -v N: Limit to N kilobytes of memory
+###  -t N: Limit of CPU time for this subprocess
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