src/MetadataExtractorConnector/MetadataExtractorConnector.csproj

@@ -4,7 +4,7 @@
     <TargetFramework>net6.0</TargetFramework>
     <ImplicitUsings>enable</ImplicitUsings>
     <Nullable>enable</Nullable>
-  <Version>1.2.4</Version></PropertyGroup>
+  <Version>1.2.5</Version></PropertyGroup>
   <ItemGroup>
   	<PackageReference Include="JsonSubTypes" Version="1.9.0" />
   	<PackageReference Include="Polly" Version="7.2.3" />

src/MetadataExtractorConnector/src/Org.OpenAPITools/Org.OpenAPITools.csproj

@@ -12,7 +12,7 @@
     <Description>A library generated from a OpenAPI doc</Description>
     <Copyright>No Copyright</Copyright>
     <RootNamespace>Org.OpenAPITools</RootNamespace>
-    <Version>1.2.4</Version>
+    <Version>1.2.5</Version>
     <DocumentationFile>bin\$(Configuration)\$(TargetFramework)\Org.OpenAPITools.xml</DocumentationFile>
     <RepositoryUrl>https://github.com/GIT_USER_ID/GIT_REPO_ID.git</RepositoryUrl>
     <RepositoryType>git</RepositoryType>

src/MetadataTracker.Tests/MetadataTracker.Tests.csproj

@@ -4,7 +4,7 @@
     <OutputType>Library</OutputType>
     <AutoGenerateBindingRedirects>true</AutoGenerateBindingRedirects>
     <GenerateAssemblyInfo>false</GenerateAssemblyInfo>
-  <Version>1.2.4</Version></PropertyGroup>
+  <Version>1.2.5</Version></PropertyGroup>
   <ItemGroup>
     <ProjectReference Include="..\MetadataTracker\MetadataTracker.csproj" />
   </ItemGroup>

src/MetadataTracker/MetadataStore/CoscineMetadataStore.cs

@@ -91,11 +91,16 @@ public class CoscineMetadataStore : IMetadataStore
         return null;
     }
 
-    public List<string> GetMetadataIds(string resourceId, string path)
+    public List<string> GetMetadataIds(string resourceId, string? path)
     {
         return _rdfStoreConnector.GetMetadataIds(resourceId, path);
     }
 
+    public IEnumerable<string?>? ListMetadata(string resourceId, bool extracted = false)
+    {
+        return _rdfStoreConnector.ListMetadata(resourceId, extracted);
+    }
+
 
     public bool HasGraph(Uri uri)
     {

src/MetadataTracker/MetadataStore/IMetadataStore.cs

@@ -22,7 +22,9 @@ public interface IMetadataStore
 
     Uri? GetMetadataId(string resourceId, string path, bool extracted = false);
 
-    List<string> GetMetadataIds(string resourceId, string path);
+    List<string> GetMetadataIds(string resourceId, string? path);
+
+    IEnumerable<string?>? ListMetadata(string resourceId, bool extracted = false);
 
     bool HasGraph(Uri uri);
 

src/MetadataTracker/MetadataStore/MockupMetadataStore.cs

@@ -67,7 +67,12 @@ public class MockupMetadataStore : IMetadataStore
         return null;
     }
 
-    public List<string> GetMetadataIds(string resourceId, string path)
+    public List<string> GetMetadataIds(string resourceId, string? path)
+    {
+        return new List<string>();
+    }
+
+    public IEnumerable<string?>? ListMetadata(string resourceId, bool extracted = false)
     {
         return new List<string>();
     }

src/MetadataTracker/MetadataTracker.cs

@@ -186,6 +186,31 @@ public class MetadataTracker : IMetadataTracker
 
             var resourceDataEntries = await resourceEntry.Entries.ToListAsync();
 
+            // Include the metadata that belongs to removed files
+            var resourceMetadataIds = _metadataStore.ListMetadata(resourceEntry.Id, true) ?? new List<string?>();
+            foreach (var resourceMetadataId in resourceMetadataIds.Where((entry) => entry is not null).Cast<string>())
+            {
+                var afterBase = resourceMetadataId.Replace("https://purl.org/coscine/resources/", "");
+                var resourceId = afterBase[..afterBase.IndexOf("/")];
+                var afterResource = afterBase[(afterBase.IndexOf("/") + 1)..];
+                var path = afterResource[..afterResource.IndexOf("/@type")];
+                if (!resourceDataEntries.Any((entry) => entry.GeneralIdentifier == resourceId && entry.Key == path))
+                {
+                    resourceDataEntries.Add(new DataEntry(
+                        new Coscine.ResourceTypes.Base.Models.ResourceEntry(
+                            path,
+                            false,
+                            0,
+                            null,
+                            null,
+                            null,
+                            null
+                        ),
+                        resourceId
+                    ));
+                }
+            }
+
             Logger.LogInformation("Query extraction graphs");
             // Get them all beforehand to avoid a O(n^2) complexity
             var extractionGraphs = new Dictionary<DataEntry, IGraph?>();

src/MetadataTracker/MetadataTracker.csproj

@@ -5,7 +5,7 @@
     <GenerateAssemblyInfo>false</GenerateAssemblyInfo>
 	 <ImplicitUsings>enable</ImplicitUsings>
 	<Nullable>enable</Nullable>
-  <Version>1.2.4</Version></PropertyGroup>
+  <Version>1.2.5</Version></PropertyGroup>
   <ItemGroup>
     <PackageReference Include="Coscine.Configuration" Version="2.*-*" />
     <PackageReference Include="Coscine.Database" Version="2.*-*" />

src/SemanticSimilarityConnector/SemanticSimilarityConnector.csproj

@@ -4,7 +4,7 @@
     <TargetFramework>net6.0</TargetFramework>
     <ImplicitUsings>enable</ImplicitUsings>
     <Nullable>enable</Nullable>
-  <Version>1.2.4</Version></PropertyGroup>
+  <Version>1.2.5</Version></PropertyGroup>
   <ItemGroup>
     <PackageReference Include="JsonSubTypes" Version="1.9.0" />
     <PackageReference Include="Polly" Version="7.2.3" />

src/SemanticSimilarityConnector/src/Org.OpenAPITools/Org.OpenAPITools.csproj

@@ -12,7 +12,7 @@
     <Description>A library generated from a OpenAPI doc</Description>
     <Copyright>No Copyright</Copyright>
     <RootNamespace>Org.OpenAPITools</RootNamespace>
-    <Version>1.2.4</Version>
+    <Version>1.2.5</Version>
     <DocumentationFile>bin\$(Configuration)\$(TargetFramework)\Org.OpenAPITools.xml</DocumentationFile>
     <RepositoryUrl>https://github.com/GIT_USER_ID/GIT_REPO_ID.git</RepositoryUrl>
     <RepositoryType>git</RepositoryType>