Merge branch 'dev' into 'main'

Release: Sprint/2022 09 

See merge request !2

.gitattributes

+###############################################################################
+# Set default behavior to automatically normalize line endings.
+###############################################################################
+* text=auto
+
+###############################################################################
+# Set default behavior for command prompt diff.
+#
+# This is need for earlier builds of msysgit that does not have it on by
+# default for csharp files.
+# Note: This is only used by command line
+###############################################################################
+#*.cs     diff=csharp
+
+###############################################################################
+# Set the merge driver for project and solution files
+#
+# Merging from the command prompt will add diff markers to the files if there
+# are conflicts (Merging from VS is not affected by the settings below, in VS
+# the diff markers are never inserted). Diff markers may cause the following 
+# file extensions to fail to load in VS. An alternative would be to treat
+# these files as binary and thus will always conflict and require user
+# intervention with every merge. To do so, just uncomment the entries below
+###############################################################################
+#*.sln       merge=binary
+#*.csproj    merge=binary
+#*.vbproj    merge=binary
+#*.vcxproj   merge=binary
+#*.vcproj    merge=binary
+#*.dbproj    merge=binary
+#*.fsproj    merge=binary
+#*.lsproj    merge=binary
+#*.wixproj   merge=binary
+#*.modelproj merge=binary
+#*.sqlproj   merge=binary
+#*.wwaproj   merge=binary
+
+###############################################################################
+# behavior for image files
+#
+# image files are treated as binary by default.
+###############################################################################
+#*.jpg   binary
+#*.png   binary
+#*.gif   binary
+
+###############################################################################
+# diff behavior for common document formats
+# 
+# Convert binary document formats to text before diffing them. This feature
+# is only available from the command line. Turn it on by uncommenting the 
+# entries below.
+###############################################################################
+#*.doc   diff=astextplain
+#*.DOC   diff=astextplain
+#*.docx  diff=astextplain
+#*.DOCX  diff=astextplain
+#*.dot   diff=astextplain
+#*.DOT   diff=astextplain
+#*.pdf   diff=astextplain
+#*.PDF   diff=astextplain
+#*.rtf   diff=astextplain
+#*.RTF   diff=astextplain

.gitignore

+## Ignore Visual Studio temporary files, build results, and
+## files generated by popular Visual Studio add-ons.
+
+# User-specific files
+*.suo
+*.user
+*.userosscache
+*.sln.docstates
+
+# User-specific files (MonoDevelop/Xamarin Studio)
+*.userprefs
+
+# Database connection for t4 class generation from database
+**/*.generated.cs
+
+# Build results
+[Dd]ebug/
+[Dd]ebugPublic/
+[Rr]elease/
+[Rr]eleases/
+x64/
+x86/
+bld/
+[Bb]in/
+[Oo]bj/
+[Ll]og/
+[Pp]roperties/
+
+# Visual Studio 2015 cache/options directory
+.vs/
+# Uncomment if you have tasks that create the project's static files in wwwroot
+#wwwroot/
+
+# MSTest test Results
+[Tt]est[Rr]esult*/
+[Bb]uild[Ll]og.*
+
+# NUNIT
+*.VisualState.xml
+TestResult.xml
+
+# Build Results of an ATL Project
+[Dd]ebugPS/
+[Rr]eleasePS/
+dlldata.c
+
+# DNX
+project.lock.json
+project.fragment.lock.json
+artifacts/
+
+*_i.c
+*_p.c
+*_i.h
+*.ilk
+*.meta
+*.obj
+*.pch
+*.pdb
+*.pgc
+*.pgd
+*.rsp
+*.sbr
+*.tlb
+*.tli
+*.tlh
+*.tmp
+*.tmp_proj
+*.log
+*.vspscc
+*.vssscc
+.builds
+*.pidb
+*.svclog
+*.scc
+
+# Chutzpah Test files
+_Chutzpah*
+
+# Visual C++ cache files
+ipch/
+*.aps
+*.ncb
+*.opendb
+*.opensdf
+*.sdf
+*.cachefile
+*.VC.db
+*.VC.VC.opendb
+
+# Visual Studio profiler
+*.psess
+*.vsp
+*.vspx
+*.sap
+
+# TFS 2012 Local Workspace
+$tf/
+
+# Guidance Automation Toolkit
+*.gpState
+
+# ReSharper is a .NET coding add-in
+_ReSharper*/
+*.[Rr]e[Ss]harper
+*.DotSettings.user
+Resharper
+
+# JustCode is a .NET coding add-in
+.JustCode
+
+# TeamCity is a build add-in
+_TeamCity*
+
+# DotCover is a Code Coverage Tool
+*.dotCover
+
+# NCrunch
+_NCrunch_*
+.*crunch*.local.xml
+nCrunchTemp_*
+
+# MightyMoose
+*.mm.*
+AutoTest.Net/
+
+# Web workbench (sass)
+.sass-cache/
+
+# Installshield output folder
+[Ee]xpress/
+
+# DocProject is a documentation generator add-in
+DocProject/buildhelp/
+DocProject/Help/*.HxT
+DocProject/Help/*.HxC
+DocProject/Help/*.hhc
+DocProject/Help/*.hhk
+DocProject/Help/*.hhp
+DocProject/Help/Html2
+DocProject/Help/html
+
+# Click-Once directory
+publish/
+
+# Publish Web Output
+*.[Pp]ublish.xml
+*.azurePubxml
+# TODO: Comment the next line if you want to checkin your web deploy settings
+# but database connection strings (with potential passwords) will be unencrypted
+#*.pubxml
+*.publishproj
+
+# Microsoft Azure Web App publish settings. Comment the next line if you want to
+# checkin your Azure Web App publish settings, but sensitive information contained
+# in these scripts will be unencrypted
+PublishScripts/
+
+# NuGet Packages
+*.nupkg
+# The packages folder can be ignored because of Package Restore
+**/packages/*
+# except build/, which is used as an MSBuild target.
+!**/packages/build/
+# Uncomment if necessary however generally it will be regenerated when needed
+#!**/packages/repositories.config
+# NuGet v3's project.json files produces more ignoreable files
+*.nuget.props
+*.nuget.targets
+
+# Microsoft Azure Build Output
+csx/
+*.build.csdef
+
+# Microsoft Azure Emulator
+ecf/
+rcf/
+
+# Windows Store app package directories and files
+AppPackages/
+BundleArtifacts/
+Package.StoreAssociation.xml
+_pkginfo.txt
+
+# Visual Studio cache files
+# files ending in .cache can be ignored
+*.[Cc]ache
+# but keep track of directories ending in .cache
+!*.[Cc]ache/
+
+# Others
+ClientBin/
+~$*
+*~
+*.dbmdl
+*.dbproj.schemaview
+*.jfm
+*.pfx
+*.publishsettings
+node_modules/
+orleans.codegen.cs
+
+# Since there are multiple workflows, uncomment next line to ignore bower_components
+# (https://github.com/github/gitignore/pull/1529#issuecomment-104372622)
+#bower_components/
+
+# RIA/Silverlight projects
+Generated_Code/
+
+# Backup & report files from converting an old project file
+# to a newer Visual Studio version. Backup files are not needed,
+# because we have git ;-)
+_UpgradeReport_Files/
+Backup*/
+UpgradeLog*.XML
+UpgradeLog*.htm
+
+# SQL Server files
+*.mdf
+*.ldf
+
+# Business Intelligence projects
+*.rdl.data
+*.bim.layout
+*.bim_*.settings
+
+# Microsoft Fakes
+FakesAssemblies/
+
+# GhostDoc plugin setting file
+*.GhostDoc.xml
+
+# Node.js Tools for Visual Studio
+.ntvs_analysis.dat
+
+# Visual Studio 6 build log
+*.plg
+
+# Visual Studio 6 workspace options file
+*.opt
+
+# Visual Studio LightSwitch build output
+**/*.HTMLClient/GeneratedArtifacts
+**/*.DesktopClient/GeneratedArtifacts
+**/*.DesktopClient/ModelManifest.xml
+**/*.Server/GeneratedArtifacts
+**/*.Server/ModelManifest.xml
+_Pvt_Extensions
+
+# Paket dependency manager
+.paket/paket.exe
+paket-files/
+
+# FAKE - F# Make
+.fake/
+
+# JetBrains Rider
+.idea/
+*.sln.iml
+
+# CodeRush
+.cr/
+
+# Python Tools for Visual Studio (PTVS)
+__pycache__/
+*.pyc
+
+#cake
+tools/*
+!tools/packages.config
+dist/
+
+# Dotnet Tool Manifest
+.config/*

.gitlab-ci.yml

+include:
+  - project: coscine/tools/gitlab-ci-templates
+    file: 
+      - /dotnet.yml
+
+stages:
+  - build
+  - publish
+  - commands
+
+
+variables:
+  DOTNET_MAIN_PROJECT_FOLDER: "SQL2Linked"
+
+build-branch:
+  extends: .build-branch
+
+build-nuget-release:
+  extends: .build-nuget-release
+
+publish-gitlab-release:
+  extends: .publish-gitlab-release
+  
+publish:
+  extends: .publish-artifact-release
+
+migration:
+  rules:
+    - if: $CI_PIPELINE_SOURCE != "schedule"
+      when: manual
+  stage: commands
+  script: 
+    - dotnet run --project .\src\$DOTNET_MAIN_PROJECT_FOLDER -- --noDryRun
+  when: manual
\ No newline at end of file

LICENSE

+MIT License
+
+Copyright (c) 2020 RWTH Aachen University
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

src/SQL2Linked.sln

+
+Microsoft Visual Studio Solution File, Format Version 12.00
+# Visual Studio Version 17
+VisualStudioVersion = 17.1.32414.318
+MinimumVisualStudioVersion = 10.0.40219.1
+Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "SQL2Linked", "SQL2Linked\SQL2Linked.csproj", "{B76A7422-1D0F-491F-B71C-D00E7C885C4A}"
+EndProject
+Global
+	GlobalSection(SolutionConfigurationPlatforms) = preSolution
+		Debug|Any CPU = Debug|Any CPU
+		Release|Any CPU = Release|Any CPU
+	EndGlobalSection
+	GlobalSection(ProjectConfigurationPlatforms) = postSolution
+		{B76A7422-1D0F-491F-B71C-D00E7C885C4A}.Debug|Any CPU.ActiveCfg = Debug|Any CPU
+		{B76A7422-1D0F-491F-B71C-D00E7C885C4A}.Debug|Any CPU.Build.0 = Debug|Any CPU
+		{B76A7422-1D0F-491F-B71C-D00E7C885C4A}.Release|Any CPU.ActiveCfg = Release|Any CPU
+		{B76A7422-1D0F-491F-B71C-D00E7C885C4A}.Release|Any CPU.Build.0 = Release|Any CPU
+	EndGlobalSection
+	GlobalSection(SolutionProperties) = preSolution
+		HideSolutionNode = FALSE
+	EndGlobalSection
+	GlobalSection(ExtensibilityGlobals) = postSolution
+		SolutionGuid = {177E1F01-F4FD-4BDC-B927-C530335E068E}
+	EndGlobalSection
+EndGlobal

src/SQL2Linked/Implementations/ProjectStructuralData.cs

+using Coscine.Database.DataModel;
+using Coscine.Database.Models;
+using VDS.RDF;
+
+namespace SQL2Linked.Implementations
+{
+    public class ProjectStructuralData : StructuralData<Project, ProjectModel>
+    {
+        public override IEnumerable<IGraph> ConvertToLinkedData(IEnumerable<Project> entries)
+        {
+            // ToDo: Implement
+            throw new NotImplementedException();
+        }
+    }
+}
\ No newline at end of file

src/SQL2Linked/Implementations/ResourceStructuralData.cs

+using Coscine.Database.DataModel;
+using Coscine.Database.Models;
+using VDS.RDF;
+
+namespace SQL2Linked.Implementations
+{
+    public class ResourceStructuralData : StructuralData<Resource, ResourceModel>
+    {
+        public override IEnumerable<IGraph> ConvertToLinkedData(IEnumerable<Resource> entries)
+        {
+            // ToDo: Implement
+            throw new NotImplementedException();
+        }
+    }
+}
\ No newline at end of file

src/SQL2Linked/Implementations/ResourceTypeStructuralData.cs

+using Coscine.Database.DataModel;
+using Coscine.Database.Models;
+using VDS.RDF;
+
+namespace SQL2Linked.Implementations
+{
+    public class ResourceTypeStructuralData : StructuralData<ResourceType, ResourceTypeModel>
+    {
+        public override IEnumerable<IGraph> ConvertToLinkedData(IEnumerable<ResourceType> entries)
+        {
+            // ToDo: Implement
+            throw new NotImplementedException();
+        }
+    }
+}
\ No newline at end of file

src/SQL2Linked/Implementations/RoleStructuralData.cs

+using Coscine.Database.DataModel;
+using Coscine.Database.Models;
+using VDS.RDF;
+
+namespace SQL2Linked.Implementations
+{
+    public class RoleStructuralData : StructuralData<Role, RoleModel>
+    {
+        public override IEnumerable<IGraph> ConvertToLinkedData(IEnumerable<Role> entries)
+        {
+            // ToDo: Implement
+            throw new NotImplementedException();
+        }
+    }
+}
\ No newline at end of file

src/SQL2Linked/Implementations/UserStructuralData.cs

+using Coscine.Database.DataModel;
+using Coscine.Database.Models;
+using VDS.RDF;
+
+namespace SQL2Linked.Implementations
+{
+    public class UserStructuralData : StructuralData<User, UserModel>
+    {
+        public override IEnumerable<IGraph> ConvertToLinkedData(IEnumerable<User> entries)
+        {
+            // ToDo: Implement
+            throw new NotImplementedException();
+        }
+    }
+}
\ No newline at end of file

src/SQL2Linked/Program.cs

+using SQL2Linked.Implementations;
+
+var dummyMode = !(args.Length > 0 && args[0] == "--noDryRun");
+if (dummyMode)
+{
+    Console.WriteLine("\n DUMMY MODE \n");
+    Console.WriteLine(" To exit dummy mode, execute with the \"--noDryRun\" argument");
+}
+
+Console.WriteLine("\nBegin SQL 2 Linked Data migration");
+
+var roleStructuralData = new RoleStructuralData();
+roleStructuralData.Migrate(dummyMode);
+
+var userStructuralData = new UserStructuralData();
+userStructuralData.Migrate(dummyMode);
+
+var resourceTypeStructuralData = new ResourceTypeStructuralData();
+resourceTypeStructuralData.Migrate(dummyMode);
+
+var projectStructuralData = new ProjectStructuralData();
+projectStructuralData.Migrate(dummyMode);
+
+var resourceStructuralData = new ResourceStructuralData();
+resourceStructuralData.Migrate(dummyMode);
+
+Console.WriteLine("\n Finished.");

src/SQL2Linked/SQL2Linked.csproj

+<Project Sdk="Microsoft.NET.Sdk">
+
+  <PropertyGroup>
+    <OutputType>Exe</OutputType>
+    <TargetFramework>net6.0</TargetFramework>
+    <ImplicitUsings>enable</ImplicitUsings>
+    <Nullable>enable</Nullable>
+  </PropertyGroup>
+
+  <ItemGroup>
+    <PackageReference Include="Coscine.Database" Version="2.*-*" />
+    <PackageReference Include="Coscine.Metadata" Version="2.*-*" />
+  </ItemGroup>
+
+</Project>

src/SQL2Linked/StructuralData.cs

+using Coscine.Configuration;
+using Coscine.Database.Models;
+using Coscine.Metadata;
+using VDS.RDF;
+
+namespace SQL2Linked
+{
+    public abstract class StructuralData<S, T> where S : class where T : DatabaseModel<S>, new()
+    {
+        public T Model { get; init; }
+        public ConsulConfiguration Configuration { get; init; }
+        public RdfStoreConnector RdfStoreConnector { get; init; }
+
+        public StructuralData()
+        {
+            Configuration = new ConsulConfiguration();
+            RdfStoreConnector = new RdfStoreConnector(Configuration.GetStringAndWait("coscine/local/virtuoso/additional/url"));
+            Model = new T();
+        }
+
+        public abstract IEnumerable<IGraph> ConvertToLinkedData(IEnumerable<S> entries);
+
+        public void Migrate(bool dummyMode)
+        {
+            var spacer = new string('-', 35);
+            Console.WriteLine($"\n{spacer}\n{typeof(T).Name}\n{spacer}");
+            var graphs = ConvertToLinkedData(Model.GetAll());
+            if (!dummyMode)
+            {
+                StoreGraphs(graphs);
+            }
+        }
+
+        private void StoreGraphs(IEnumerable<IGraph> graphs)
+        {
+            foreach (var graph in graphs)
+            {
+                Console.WriteLine($" ({graph.BaseUri})");
+                var exists = RdfStoreConnector.HasGraph(graph.BaseUri);
+                if (exists)
+                {
+                    Console.WriteLine($" - Graph {graph.BaseUri} exists");
+
+                    // Clear the existing graph from the store
+                    RdfStoreConnector.ClearGraph(graph.BaseUri);
+                    Console.WriteLine($" - Cleared Graph {graph.BaseUri}");
+                }
+                // Add the new graph to the store
+                RdfStoreConnector.AddGraph(graph);
+                Console.WriteLine($" - Graph {graph.BaseUri} added successfully");
+                Console.WriteLine();
+            }
+        }
+    }
+}
\ No newline at end of file