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v7.2.2
Fix tRNAs/5S parsing after bakta update
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v7.2.1
force output dir for bakta and explicit column names in check_tRNA
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v7.0
Concatenate genome and plasmids sequences (if any). Add plasmids proteins annotations
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v6.1
Update snakemake wrappers to fix conda
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v6.0
Better checksums; output table and unpaired reads can be included
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v5.3
Better documentation and version bumps for bakta as well as others minor bumps for checkm, metaxa2 and SPades
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v5.2
Recovered the behavior of length of 0bp when LSU/SSU/plasmids are not detected
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v5.1
Fix issue in plasmid length summary. No compliant mode
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v5.0
Lengths in summary, min 500bp contigs and no MDMcleaner, plus fixes
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v4.2
Handle exceptions from MDMcleaner. Fix plasmid workflow to not trigger unneeded rules.
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v4.1
Fix IndexError issue with input function
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v4.0
Fix bugs such as issue with Recycler failing with unconnected plasmid assembly graph or missing gene names in annotations. Add assembly date and workflow version to the summary table. Better documentation regarding the rerun behavior of Snakemake
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v3.1
Reduce disk space with new temporary files
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v3.0
Better READMEs; plasmids when needed; 0-bp LSU/SSU if not detected
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v2.0
The assembly quality assessment is performed to evaluate the compliance to the SeqCode and the MIMAG