remove old docker files + rebuild docs

Dockerfile

-# # Start with a base image that includes conda
-# FROM continuumio/miniconda3:latest
-
-# # Set environment variables
-# ENV CONDA_DEFAULT_ENV=pod
-# ENV PATH /opt/conda/envs/${CONDA_DEFAULT_ENV}/bin:$PATH
-# ENV HOME /root
-
-
-# # Copy project file
-# COPY requirements.txt .
-
-# # Create a conda environment and install the required packages
-# RUN conda create --name ${CONDA_DEFAULT_ENV} python=3.12.7 -y && \
-#     echo "conda activate ${CONDA_DEFAULT_ENV}" > ~/.bashrc && \
-#     echo "conda install -n ${CONDA_DEFAULT_ENV} --file requirements.txt" > ~/.bashrc
-
-# # Activate environment
-# SHELL ["conda", "run", "-n", "pod", "/bin/bash", "-c"]
-
-# WORKDIR /root
-
-# # Set the default environment on container start
-# # ENTRYPOINT ["conda", "run", "-n", "pod", "/bin/bash", "-c"]
-
-# CMD ["bash"]
-
-# FROM continuumio/miniconda3:latest
-
-# # Set working directory
-# WORKDIR /app
-
-# # Copy environment setup files
-# COPY requirements.txt ./
-
-# # Update the base environment's Python version
-# RUN conda install -n base python=3.12.7 -y && \
-# pip install --upgrade pip==25.0  && \
-# pip install -r requirements.txt
-
-# # # Install the required packages
-# # RUN pip install --upgrade pip==25.0
-# # # RUN conda install vtk==9.4.0 -y
-# # RUN pip install -r requirements.txt
-# #     # conda install --yes --file requirements.txt
-
-# # Use the Conda environment
-# CMD ["/bin/bash"]
-
-
-
-# FROM continuumio/miniconda3:latest
-
-# # Set working directory
-# WORKDIR /app
-
-# # Copy requirements file
-# COPY requirements.txt ./ 
-
-# # Install dependencies
-# RUN conda update -n base -c defaults conda && \
-#     conda create --name pod python=3.12.7 -c conda-forge && \
-#     echo "conda activate pod" >> ~/.bashrc && \
-#     /bin/bash -c "source ~/.bashrc && conda activate pod && \
-#                   conda install -c conda-forge vtk=9.3.1 && \
-#                   pip install -r requirements.txt"
-
-# # Ensure conda environment is activated when entering the container
-# RUN echo "conda activate pod" >> /root/.bashrc
-# SHELL ["/bin/bash", "--login", "-c"]
-
-# # Default to an interactive shell
-# CMD ["/bin/bash"]
-
-# Use Python base image
-FROM python:3.12.7
-
-# Install system dependencies
-RUN apt-get update && apt-get install -y \
-    git cmake ninja-build g++ gcc python3-dev
-
-# Clone the repository and rewrite SSH URLs to HTTPS
-RUN git clone https://github.com/tataratat/splinepy.git && \
-    cd splinepy && \
-    git config --global url."https://github.com/".insteadOf "git@github.com:" && \
-    git submodule deinit -f . && \
-    git submodule update --init --recursive && \
-    pip install -e .
-
-
-# RUN apt-get update -y && apt-get upgrade -y
-
-# # Update pip
-# RUN pip install --upgrade pip==25.0
-
-# # Copy your project files
-# COPY requirements.txt .
-
-# # Install dependencies (if needed)
-# # RUN pip install --upgrade pyvista
-# # RUN pip install vtk
-# # RUN pip install -r requirements.txt
-# # Install documentation dependencies
-# RUN pip install numpy==2.0.2 kneed==0.8.5 matplotlib==3.9.3 pandas==2.2.3 scikit-learn==1.5.2 scipy==1.14.1 tensorflow==2.18.0
-# # RUN pip install setuptools --upgrade
-# # RUN pip install splinepy==0.1.3
-# # Install splinepy from suorce
-# RUN git clone https://github.com/tataratat/splinepy.git && cd splinepy && git submodule update --init --recursive && pip install -e .
-# RUN pip install sphinx==8.2.1 myst-parser==4.0.1 sphinx-copybutton==0.5.2 sphinx-rtd-theme==3.0.2
-
-WORKDIR /root
-
-CMD ["python"]

docker-compose.yml

-services:
-  solver:
-    build:
-      context: .
-      dockerfile: Dockerfile
-    volumes:
-      - .:/root/solver
-    stdin_open: true  # Equivalent to -i for interactive mode
-    tty: true         # Equivalent to -t for a terminal interface
-    command: ["/bin/bash"]
\ No newline at end of file

docs/build/src/models.html

@@ -131,7 +131,7 @@
 <p>Base class for regression models.</p>
 <dl class="py method">
 <dt class="sig sig-object py" id="models.RegressionModels.RegressionModels.POD">
-<span class="sig-name descname"><span class="pre">POD</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">R_velocity</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">R_pressure</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">scaled</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><span class="pre">Tuple</span><span class="p"><span class="pre">[</span></span><span class="pre">ndarray</span><span class="p"><span class="pre">,</span></span><span class="w"> </span><span class="pre">ndarray</span><span class="p"><span class="pre">]</span></span></span></span><a class="headerlink" href="#models.RegressionModels.RegressionModels.POD" title="Link to this definition"></a></dt>
+<span class="sig-name descname"><span class="pre">POD</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">R_velocity</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">R_pressure</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">scaled</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">testdata</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><span class="pre">Tuple</span><span class="p"><span class="pre">[</span></span><span class="pre">ndarray</span><span class="p"><span class="pre">,</span></span><span class="w"> </span><span class="pre">ndarray</span><span class="p"><span class="pre">]</span></span></span></span><a class="headerlink" href="#models.RegressionModels.RegressionModels.POD" title="Link to this definition"></a></dt>
 <dd><p>Perform Proper Orthogonal Decomposition (POD) on the velocity and pressure fields.</p>
 <p>If R_velocity or R_pressure is None, the elbow point is used.</p>
 <dl class="field-list simple">
@@ -140,6 +140,7 @@
 <li><p><strong>R_velocity</strong> (<em>int</em><em>, </em><em>optional</em>) – Number of modes for the velocity field, by default None</p></li>
 <li><p><strong>R_pressure</strong> (<em>int</em><em>, </em><em>optional</em>) – Number of modes for the pressure field, by default None</p></li>
 <li><p><strong>scaled</strong> (<em>bool</em><em>, </em><em>optional</em>) – Use scaled data, by default True</p></li>
+<li><p><strong>testdata</strong> (<em>bool</em><em>, </em><em>optional</em>) – Use test data, by default True</p></li>
 </ul>
 </dd>
 <dt class="field-even">Returns<span class="colon">:</span></dt>