From 7eb75558443b5ff20cd9f3d5df5c6382527970b5 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Thu, 27 Feb 2025 10:06:33 +0100
Subject: [PATCH 01/33] Fix api issues

---
 .gitlab-ci.yml |  9 ++++++---
 mkdocs.yml     | 45 +++++++++++++++++++++++----------------------
 2 files changed, 29 insertions(+), 25 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 01e325d..228a4bf 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -33,8 +33,10 @@ clone:
       # clone repos
       - git clone https://gitlab-ci-token:${CI_JOB_TOKEN}@git.rwth-aachen.de/unicado/aircraft-design
       - cd aircraft-design
+      # Clone libraries inside the aircraft-design directory
       - git clone --recurse-submodules https://gitlab-ci-token:${CI_JOB_TOKEN}@git.rwth-aachen.de/unicado/libraries libs/
-    # Change to the project directory (useful for multi-directory repositories)
+    
+      # Change to the project directory (useful for multi-directory repositories)
       - cd $CI_PROJECT_DIR
       - ls -la $CI_PROJECT_DIR
   artifacts:
@@ -42,7 +44,6 @@ clone:
     paths:
       - $CI_PROJECT_DIR/aircraft-design
       - $CI_PROJECT_DIR/libraries
-      - $CI_PROJECT_DIR/docs/documentation
   rules:
     - if: '$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH'  # Run when the commit is on the default branch
       when: on_success  # Only run if the previous jobs are successful
@@ -79,4 +80,6 @@ pages:
     - if: '$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH'  # Run when the commit is on the default branch
       when: on_success  # Only run if the previous jobs are successful
     - if: '$CI_COMMIT_BRANCH != $CI_DEFAULT_BRANCH'  # Allow manual triggers on non-default branches
-      when: manual  # Run only when triggered manually
\ No newline at end of file
+      when: manual  # Run only when triggered manually
+    - if: '$CI_PIPELINE_SOURCE == "trigger"'  # Triggered by another pipeline
+      when: on_success  # Run if the source pipeline was successful
\ No newline at end of file
diff --git a/mkdocs.yml b/mkdocs.yml
index 9365d77..bdbfec3 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -73,18 +73,19 @@ plugins:
   - mkdoxy:
       projects:
         propulsion_design:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "propulsion_design"
-            OUTPUT_DIR: "docs/api/propulsion"
-            BIBTEX_FILE: "docs/assets/bibtex/propulsion_design_literature.bib"
-          src-dirs: ../aircraft-design/propulsion_design/src/
+          src-dirs: ../aircraft-design/propulsion_design/src
           full-doc: True
+          output: docs/api/propulsion_design
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+            BIBTEX_FILE: "docs/assets/bibtex/propulsion_design_literature.bib"
         ecological_assessment:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "ecological_assessment"
-            OUTPUT_DIR: "docs/api/ecological_assessment"
+            OUTPUT_DIR: "api/ecological_assessment"
             BIBTEX_FILE: "docs/assets/bibtex/ecological_assessment_literature.bib"
           src-dirs: ../aircraft-design/ecological_assessment/src/
           full-doc: True
@@ -92,7 +93,7 @@ plugins:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "initial_sizing"
-            OUTPUT_DIR: "docs/api/initial_sizing"
+            OUTPUT_DIR: "api/initial_sizing"
             BIBTEX_FILE: "docs/assets/bibtex/initial_sizing_literature.bib"
           src-dirs: ../aircraft-design/initial_sizing/src/
           full-doc: true
@@ -100,7 +101,7 @@ plugins:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "create_mission_xml"
-            OUTPUT_DIR: "docs/api/create_mission_xml"
+            OUTPUT_DIR: "api/create_mission_xml"
             BIBTEX_FILE: "docs/assets/bibtex/create_mission_xml_literature.bib"
           src-dirs: ../aircraft-design/create_mission_xml/src/
           full-doc: true
@@ -108,7 +109,7 @@ plugins:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "fuselage_design"
-            OUTPUT_DIR: "docs/api/fuselage_design"
+            OUTPUT_DIR: "api/fuselage_design"
             BIBTEX_FILE: "docs/assets/bibtex/fuselage_design_literature.bib"
           src-dirs: ../aircraft-design/fuselage_design/src/
           full-doc: true
@@ -116,7 +117,7 @@ plugins:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "wing_design"
-            OUTPUT_DIR: "docs/api/wing_design"
+            OUTPUT_DIR: "api/wing_design"
             BIBTEX_FILE: "docs/assets/bibtex/wing_design_literature.bib"
           src-dirs: ../aircraft-design/wing_design/src/
           full-doc: True
@@ -124,77 +125,77 @@ plugins:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "empennage_design"
-            OUTPUT_DIR: "docs/api/empennage_design"
+            OUTPUT_DIR: "api/empennage_design"
           src-dirs: ../aircraft-design/empennage_design/src/
           full-doc: true
         tank_design:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "tank_design"
-            OUTPUT_DIR: "docs/api/tank_design"
+            OUTPUT_DIR: "api/tank_design"
           src-dirs: ../aircraft-design/tank_design/src/
           full-doc: true
         landing_gear_design:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "landing_gear_design"
-            OUTPUT_DIR: "docs/api/landing_gear_design"
+            OUTPUT_DIR: "api/landing_gear_design"
           src-dirs: ../aircraft-design/landing_gear_design/src/
           full-doc: true
         systems_design:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "systems_design"
-            OUTPUT_DIR: "docs/api/systems_design"
+            OUTPUT_DIR: "api/systems_design"
           src-dirs: ../aircraft-design/systems_design/src/
           full-doc: true
         aerodynamic_analysis:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "aerodynamic_analysis"
-            OUTPUT_DIR: "docs/api/aerodynamic_analysis"
+            OUTPUT_DIR: "api/aerodynamic_analysis"
           src-dirs: ../aircraft-design/aerodynamic_analysis/src/
           full-doc: true
         aircraftGeometry2:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "aircraftGeometry2"
-            OUTPUT_DIR: "docs/api/aircraftGeometry2"
+            OUTPUT_DIR: "api/aircraftGeometry2"
           src-dirs: ../aircraft-design/libs/aircraftGeometry2/src/
           full-doc: true
         engine:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "engine"
-            OUTPUT_DIR: "docs/api/engine"
+            OUTPUT_DIR: "api/engine"
           src-dirs: ../aircraft-design/libs/engine/src/
           full-doc: true
         mission_analysis:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "mission_analysis"
-            OUTPUT_DIR: "docs/api/mission_analysis"
+            OUTPUT_DIR: "api/mission_analysis"
           src-dirs: ../aircraft-design/mission_analysis/src/
           full-doc: true
         weight_and_balance_analysis:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "weight_and_balance_analysis"
-            OUTPUT_DIR: "docs/api/weight_and_balance_analysis"
+            OUTPUT_DIR: "api/weight_and_balance_analysis"
           src-dirs: ../aircraft-design/weight_and_balance_analysis/src/
           full-doc: true
         performance_assesment:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "performance_assesment"
-            OUTPUT_DIR: "docs/api/performance_assesment"
+            OUTPUT_DIR: "api/performance_assesment"
           src-dirs: ../aircraft-design/performance_assesment/src/
           full-doc: true
         cost_estimation:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "cost_estimation"
-            OUTPUT_DIR: "docs/api/cost_estimation"
+            OUTPUT_DIR: "api/cost_estimation"
           src-dirs: ../aircraft-design/cost_estimation/src/
           full-doc: true
   - glightbox                             # Plugin for lightbox-style image and content viewing.
-- 
GitLab


From ea6be4eb3a4605da222369e6e4773313e5548b89 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Thu, 27 Feb 2025 10:06:33 +0100
Subject: [PATCH 02/33] Fix api issues

---
 .gitlab-ci.yml |   10 +-
 Doxyfile       | 2872 ------------------------------------------------
 mkdocs.yml     |   44 +-
 3 files changed, 29 insertions(+), 2897 deletions(-)
 delete mode 100644 Doxyfile

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 01e325d..c3f1908 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -33,8 +33,10 @@ clone:
       # clone repos
       - git clone https://gitlab-ci-token:${CI_JOB_TOKEN}@git.rwth-aachen.de/unicado/aircraft-design
       - cd aircraft-design
+      # Clone libraries inside the aircraft-design directory
       - git clone --recurse-submodules https://gitlab-ci-token:${CI_JOB_TOKEN}@git.rwth-aachen.de/unicado/libraries libs/
-    # Change to the project directory (useful for multi-directory repositories)
+    
+      # Change to the project directory (useful for multi-directory repositories)
       - cd $CI_PROJECT_DIR
       - ls -la $CI_PROJECT_DIR
   artifacts:
@@ -42,7 +44,6 @@ clone:
     paths:
       - $CI_PROJECT_DIR/aircraft-design
       - $CI_PROJECT_DIR/libraries
-      - $CI_PROJECT_DIR/docs/documentation
   rules:
     - if: '$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH'  # Run when the commit is on the default branch
       when: on_success  # Only run if the previous jobs are successful
@@ -68,6 +69,7 @@ pages:
     - pipenv install --dev  # Install all necessary dependencies
   script:
     # Build the MkDocs documentation site
+    - cp -r $CI_PROJECT_DIR/aircraft-design/propulsion_design/src $CI_PROJECT_DIR/docs/documentation/propulsion_design 
     - pipenv run mkdocs build --verbose --site-dir $CI_PROJECT_DIR/public
   needs:
     - clone  # This job depends on the successful completion of the clone job
@@ -79,4 +81,6 @@ pages:
     - if: '$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH'  # Run when the commit is on the default branch
       when: on_success  # Only run if the previous jobs are successful
     - if: '$CI_COMMIT_BRANCH != $CI_DEFAULT_BRANCH'  # Allow manual triggers on non-default branches
-      when: manual  # Run only when triggered manually
\ No newline at end of file
+      when: manual  # Run only when triggered manually
+    - if: '$CI_PIPELINE_SOURCE == "trigger"'  # Triggered by another pipeline
+      when: on_success  # Run if the source pipeline was successful
\ No newline at end of file
diff --git a/Doxyfile b/Doxyfile
deleted file mode 100644
index 4a0794a..0000000
--- a/Doxyfile
+++ /dev/null
@@ -1,2872 +0,0 @@
-# Doxyfile 1.9.8
-
-# This file describes the settings to be used by the documentation system
-# doxygen (www.doxygen.org) for a project.
-#
-# All text after a double hash (##) is considered a comment and is placed in
-# front of the TAG it is preceding.
-#
-# All text after a single hash (#) is considered a comment and will be ignored.
-# The format is:
-# TAG = value [value, ...]
-# For lists, items can also be appended using:
-# TAG += value [value, ...]
-# Values that contain spaces should be placed between quotes (\" \").
-#
-# Note:
-#
-# Use doxygen to compare the used configuration file with the template
-# configuration file:
-# doxygen -x [configFile]
-# Use doxygen to compare the used configuration file with the template
-# configuration file without replacing the environment variables or CMake type
-# replacement variables:
-# doxygen -x_noenv [configFile]
-
-#---------------------------------------------------------------------------
-# Project related configuration options
-#---------------------------------------------------------------------------
-
-# This tag specifies the encoding used for all characters in the configuration
-# file that follow. The default is UTF-8 which is also the encoding used for all
-# text before the first occurrence of this tag. Doxygen uses libiconv (or the
-# iconv built into libc) for the transcoding. See
-# https://www.gnu.org/software/libiconv/ for the list of possible encodings.
-# The default value is: UTF-8.
-
-DOXYFILE_ENCODING      = UTF-8
-
-# The PROJECT_NAME tag is a single word (or a sequence of words surrounded by
-# double-quotes, unless you are using Doxywizard) that should identify the
-# project for which the documentation is generated. This name is used in the
-# title of most generated pages and in a few other places.
-# The default value is: My Project.
-
-PROJECT_NAME           = @PROJECT_NAME@
-
-# The PROJECT_NUMBER tag can be used to enter a project or revision number. This
-# could be handy for archiving the generated documentation or if some version
-# control system is used.
-
-PROJECT_NUMBER         =
-
-# Using the PROJECT_BRIEF tag one can provide an optional one line description
-# for a project that appears at the top of each page and should give viewer a
-# quick idea about the purpose of the project. Keep the description short.
-
-PROJECT_BRIEF          =
-
-# With the PROJECT_LOGO tag one can specify a logo or an icon that is included
-# in the documentation. The maximum height of the logo should not exceed 55
-# pixels and the maximum width should not exceed 200 pixels. Doxygen will copy
-# the logo to the output directory.
-
-PROJECT_LOGO           =
-
-# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) path
-# into which the generated documentation will be written. If a relative path is
-# entered, it will be relative to the location where doxygen was started. If
-# left blank the current directory will be used.
-
-OUTPUT_DIRECTORY       = @OUTPUT_DIR@
-
-# If the CREATE_SUBDIRS tag is set to YES then doxygen will create up to 4096
-# sub-directories (in 2 levels) under the output directory of each output format
-# and will distribute the generated files over these directories. Enabling this
-# option can be useful when feeding doxygen a huge amount of source files, where
-# putting all generated files in the same directory would otherwise causes
-# performance problems for the file system. Adapt CREATE_SUBDIRS_LEVEL to
-# control the number of sub-directories.
-# The default value is: NO.
-
-CREATE_SUBDIRS         = NO
-
-# Controls the number of sub-directories that will be created when
-# CREATE_SUBDIRS tag is set to YES. Level 0 represents 16 directories, and every
-# level increment doubles the number of directories, resulting in 4096
-# directories at level 8 which is the default and also the maximum value. The
-# sub-directories are organized in 2 levels, the first level always has a fixed
-# number of 16 directories.
-# Minimum value: 0, maximum value: 8, default value: 8.
-# This tag requires that the tag CREATE_SUBDIRS is set to YES.
-
-CREATE_SUBDIRS_LEVEL   = 8
-
-# If the ALLOW_UNICODE_NAMES tag is set to YES, doxygen will allow non-ASCII
-# characters to appear in the names of generated files. If set to NO, non-ASCII
-# characters will be escaped, for example _xE3_x81_x84 will be used for Unicode
-# U+3044.
-# The default value is: NO.
-
-ALLOW_UNICODE_NAMES    = NO
-
-# The OUTPUT_LANGUAGE tag is used to specify the language in which all
-# documentation generated by doxygen is written. Doxygen will use this
-# information to generate all constant output in the proper language.
-# Possible values are: Afrikaans, Arabic, Armenian, Brazilian, Bulgarian,
-# Catalan, Chinese, Chinese-Traditional, Croatian, Czech, Danish, Dutch, English
-# (United States), Esperanto, Farsi (Persian), Finnish, French, German, Greek,
-# Hindi, Hungarian, Indonesian, Italian, Japanese, Japanese-en (Japanese with
-# English messages), Korean, Korean-en (Korean with English messages), Latvian,
-# Lithuanian, Macedonian, Norwegian, Persian (Farsi), Polish, Portuguese,
-# Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak, Slovene, Spanish,
-# Swedish, Turkish, Ukrainian and Vietnamese.
-# The default value is: English.
-
-OUTPUT_LANGUAGE        = English
-
-# If the BRIEF_MEMBER_DESC tag is set to YES, doxygen will include brief member
-# descriptions after the members that are listed in the file and class
-# documentation (similar to Javadoc). Set to NO to disable this.
-# The default value is: YES.
-
-BRIEF_MEMBER_DESC      = YES
-
-# If the REPEAT_BRIEF tag is set to YES, doxygen will prepend the brief
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-# Note: If both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the
-# brief descriptions will be completely suppressed.
-# The default value is: YES.
-
-REPEAT_BRIEF           = YES
-
-# This tag implements a quasi-intelligent brief description abbreviator that is
-# used to form the text in various listings. Each string in this list, if found
-# as the leading text of the brief description, will be stripped from the text
-# and the result, after processing the whole list, is used as the annotated
-# text. Otherwise, the brief description is used as-is. If left blank, the
-# following values are used ($name is automatically replaced with the name of
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-
-ABBREVIATE_BRIEF       = "The $name class" \
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-                         "The $name file" \
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-                         provides \
-                         specifies \
-                         contains \
-                         represents \
-                         a \
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-                         the
-
-# If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then
-# doxygen will generate a detailed section even if there is only a brief
-# description.
-# The default value is: NO.
-
-ALWAYS_DETAILED_SEC    = NO
-
-# If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all
-# inherited members of a class in the documentation of that class as if those
-# members were ordinary class members. Constructors, destructors and assignment
-# operators of the base classes will not be shown.
-# The default value is: NO.
-
-INLINE_INHERITED_MEMB  = NO
-
-# If the FULL_PATH_NAMES tag is set to YES, doxygen will prepend the full path
-# before files name in the file list and in the header files. If set to NO the
-# shortest path that makes the file name unique will be used
-# The default value is: YES.
-
-FULL_PATH_NAMES        = YES
-
-# The STRIP_FROM_PATH tag can be used to strip a user-defined part of the path.
-# Stripping is only done if one of the specified strings matches the left-hand
-# part of the path. The tag can be used to show relative paths in the file list.
-# If left blank the directory from which doxygen is run is used as the path to
-# strip.
-#
-# Note that you can specify absolute paths here, but also relative paths, which
-# will be relative from the directory where doxygen is started.
-# This tag requires that the tag FULL_PATH_NAMES is set to YES.
-
-STRIP_FROM_PATH        =
-
-# The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of the
-# path mentioned in the documentation of a class, which tells the reader which
-# header file to include in order to use a class. If left blank only the name of
-# the header file containing the class definition is used. Otherwise one should
-# specify the list of include paths that are normally passed to the compiler
-# using the -I flag.
-
-STRIP_FROM_INC_PATH    =
-
-# If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter (but
-# less readable) file names. This can be useful is your file systems doesn't
-# support long names like on DOS, Mac, or CD-ROM.
-# The default value is: NO.
-
-SHORT_NAMES            = NO
-
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-# style comments (thus requiring an explicit @brief command for a brief
-# description.)
-# The default value is: NO.
-
-JAVADOC_AUTOBRIEF      = NO
-
-# If the JAVADOC_BANNER tag is set to YES then doxygen will interpret a line
-# such as
-# /***************
-# as being the beginning of a Javadoc-style comment "banner". If set to NO, the
-# Javadoc-style will behave just like regular comments and it will not be
-# interpreted by doxygen.
-# The default value is: NO.
-
-JAVADOC_BANNER         = NO
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-# requiring an explicit \brief command for a brief description.)
-# The default value is: NO.
-
-QT_AUTOBRIEF           = NO
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-# The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make doxygen treat a
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-# a brief description. This used to be the default behavior. The new default is
-# to treat a multi-line C++ comment block as a detailed description. Set this
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-MULTILINE_CPP_IS_BRIEF = NO
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-# By default Python docstrings are displayed as preformatted text and doxygen's
-# special commands cannot be used. By setting PYTHON_DOCSTRING to NO the
-# doxygen's special commands can be used and the contents of the docstring
-# documentation blocks is shown as doxygen documentation.
-# The default value is: YES.
-
-PYTHON_DOCSTRING       = YES
-
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-# documentation from any documented member that it re-implements.
-# The default value is: YES.
-
-INHERIT_DOCS           = YES
-
-# If the SEPARATE_MEMBER_PAGES tag is set to YES then doxygen will produce a new
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-# of the file/class/namespace that contains it.
-# The default value is: NO.
-
-SEPARATE_MEMBER_PAGES  = NO
-
-# The TAB_SIZE tag can be used to set the number of spaces in a tab. Doxygen
-# uses this value to replace tabs by spaces in code fragments.
-# Minimum value: 1, maximum value: 16, default value: 4.
-
-TAB_SIZE               = 4
-
-# This tag can be used to specify a number of aliases that act as commands in
-# the documentation. An alias has the form:
-# name=value
-# For example adding
-# "sideeffect=@par Side Effects:^^"
-# will allow you to put the command \sideeffect (or @sideeffect) in the
-# documentation, which will result in a user-defined paragraph with heading
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-# with the commands \{ and \} for these it is advised to use the version @{ and
-# @} or use a double escape (\\{ and \\})
-
-ALIASES                =
-
-# Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C sources
-# only. Doxygen will then generate output that is more tailored for C. For
-# instance, some of the names that are used will be different. The list of all
-# members will be omitted, etc.
-# The default value is: NO.
-
-OPTIMIZE_OUTPUT_FOR_C  = NO
-
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-# Python sources only. Doxygen will then generate output that is more tailored
-# for that language. For instance, namespaces will be presented as packages,
-# qualified scopes will look different, etc.
-# The default value is: NO.
-
-OPTIMIZE_OUTPUT_JAVA   = NO
-
-# Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran
-# sources. Doxygen will then generate output that is tailored for Fortran.
-# The default value is: NO.
-
-OPTIMIZE_FOR_FORTRAN   = NO
-
-# Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL
-# sources. Doxygen will then generate output that is tailored for VHDL.
-# The default value is: NO.
-
-OPTIMIZE_OUTPUT_VHDL   = NO
-
-# Set the OPTIMIZE_OUTPUT_SLICE tag to YES if your project consists of Slice
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-# language. For instance, namespaces will be presented as modules, types will be
-# separated into more groups, etc.
-# The default value is: NO.
-
-OPTIMIZE_OUTPUT_SLICE  = NO
-
-# Doxygen selects the parser to use depending on the extension of the files it
-# parses. With this tag you can assign which parser to use for a given
-# extension. Doxygen has a built-in mapping, but you can override or extend it
-# using this tag. The format is ext=language, where ext is a file extension, and
-# language is one of the parsers supported by doxygen: IDL, Java, JavaScript,
-# Csharp (C#), C, C++, Lex, D, PHP, md (Markdown), Objective-C, Python, Slice,
-# VHDL, Fortran (fixed format Fortran: FortranFixed, free formatted Fortran:
-# FortranFree, unknown formatted Fortran: Fortran. In the later case the parser
-# tries to guess whether the code is fixed or free formatted code, this is the
-# default for Fortran type files). For instance to make doxygen treat .inc files
-# as Fortran files (default is PHP), and .f files as C (default is Fortran),
-# use: inc=Fortran f=C.
-#
-# Note: For files without extension you can use no_extension as a placeholder.
-#
-# Note that for custom extensions you also need to set FILE_PATTERNS otherwise
-# the files are not read by doxygen. When specifying no_extension you should add
-# * to the FILE_PATTERNS.
-#
-# Note see also the list of default file extension mappings.
-
-EXTENSION_MAPPING      =
-
-# If the MARKDOWN_SUPPORT tag is enabled then doxygen pre-processes all comments
-# according to the Markdown format, which allows for more readable
-# documentation. See https://daringfireball.net/projects/markdown/ for details.
-# The output of markdown processing is further processed by doxygen, so you can
-# mix doxygen, HTML, and XML commands with Markdown formatting. Disable only in
-# case of backward compatibilities issues.
-# The default value is: YES.
-
-MARKDOWN_SUPPORT       = YES
-
-# When the TOC_INCLUDE_HEADINGS tag is set to a non-zero value, all headings up
-# to that level are automatically included in the table of contents, even if
-# they do not have an id attribute.
-# Note: This feature currently applies only to Markdown headings.
-# Minimum value: 0, maximum value: 99, default value: 5.
-# This tag requires that the tag MARKDOWN_SUPPORT is set to YES.
-
-TOC_INCLUDE_HEADINGS   = 5
-
-# The MARKDOWN_ID_STYLE tag can be used to specify the algorithm used to
-# generate identifiers for the Markdown headings. Note: Every identifier is
-# unique.
-# Possible values are: DOXYGEN use a fixed 'autotoc_md' string followed by a
-# sequence number starting at 0 and GITHUB use the lower case version of title
-# with any whitespace replaced by '-' and punctuation characters removed.
-# The default value is: DOXYGEN.
-# This tag requires that the tag MARKDOWN_SUPPORT is set to YES.
-
-MARKDOWN_ID_STYLE      = DOXYGEN
-
-# When enabled doxygen tries to link words that correspond to documented
-# classes, or namespaces to their corresponding documentation. Such a link can
-# be prevented in individual cases by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
-# The default value is: YES.
-
-AUTOLINK_SUPPORT       = YES
-
-# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want
-# to include (a tag file for) the STL sources as input, then you should set this
-# tag to YES in order to let doxygen match functions declarations and
-# definitions whose arguments contain STL classes (e.g. func(std::string);
-# versus func(std::string) {}). This also make the inheritance and collaboration
-# diagrams that involve STL classes more complete and accurate.
-# The default value is: NO.
-
-BUILTIN_STL_SUPPORT    = NO
-
-# If you use Microsoft's C++/CLI language, you should set this option to YES to
-# enable parsing support.
-# The default value is: NO.
-
-CPP_CLI_SUPPORT        = NO
-
-# Set the SIP_SUPPORT tag to YES if your project consists of sip (see:
-# https://www.riverbankcomputing.com/software/sip/intro) sources only. Doxygen
-# will parse them like normal C++ but will assume all classes use public instead
-# of private inheritance when no explicit protection keyword is present.
-# The default value is: NO.
-
-SIP_SUPPORT            = NO
-
-# For Microsoft's IDL there are propget and propput attributes to indicate
-# getter and setter methods for a property. Setting this option to YES will make
-# doxygen to replace the get and set methods by a property in the documentation.
-# This will only work if the methods are indeed getting or setting a simple
-# type. If this is not the case, or you want to show the methods anyway, you
-# should set this option to NO.
-# The default value is: YES.
-
-IDL_PROPERTY_SUPPORT   = YES
-
-# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC
-# tag is set to YES then doxygen will reuse the documentation of the first
-# member in the group (if any) for the other members of the group. By default
-# all members of a group must be documented explicitly.
-# The default value is: NO.
-
-DISTRIBUTE_GROUP_DOC   = NO
-
-# If one adds a struct or class to a group and this option is enabled, then also
-# any nested class or struct is added to the same group. By default this option
-# is disabled and one has to add nested compounds explicitly via \ingroup.
-# The default value is: NO.
-
-GROUP_NESTED_COMPOUNDS = NO
-
-# Set the SUBGROUPING tag to YES to allow class member groups of the same type
-# (for instance a group of public functions) to be put as a subgroup of that
-# type (e.g. under the Public Functions section). Set it to NO to prevent
-# subgrouping. Alternatively, this can be done per class using the
-# \nosubgrouping command.
-# The default value is: YES.
-
-SUBGROUPING            = YES
-
-# When the INLINE_GROUPED_CLASSES tag is set to YES, classes, structs and unions
-# are shown inside the group in which they are included (e.g. using \ingroup)
-# instead of on a separate page (for HTML and Man pages) or section (for LaTeX
-# and RTF).
-#
-# Note that this feature does not work in combination with
-# SEPARATE_MEMBER_PAGES.
-# The default value is: NO.
-
-INLINE_GROUPED_CLASSES = NO
-
-# When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and unions
-# with only public data fields or simple typedef fields will be shown inline in
-# the documentation of the scope in which they are defined (i.e. file,
-# namespace, or group documentation), provided this scope is documented. If set
-# to NO, structs, classes, and unions are shown on a separate page (for HTML and
-# Man pages) or section (for LaTeX and RTF).
-# The default value is: NO.
-
-INLINE_SIMPLE_STRUCTS  = NO
-
-# When TYPEDEF_HIDES_STRUCT tag is enabled, a typedef of a struct, union, or
-# enum is documented as struct, union, or enum with the name of the typedef. So
-# typedef struct TypeS {} TypeT, will appear in the documentation as a struct
-# with name TypeT. When disabled the typedef will appear as a member of a file,
-# namespace, or class. And the struct will be named TypeS. This can typically be
-# useful for C code in case the coding convention dictates that all compound
-# types are typedef'ed and only the typedef is referenced, never the tag name.
-# The default value is: NO.
-
-TYPEDEF_HIDES_STRUCT   = NO
-
-# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
-# cache is used to resolve symbols given their name and scope. Since this can be
-# an expensive process and often the same symbol appears multiple times in the
-# code, doxygen keeps a cache of pre-resolved symbols. If the cache is too small
-# doxygen will become slower. If the cache is too large, memory is wasted. The
-# cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range
-# is 0..9, the default is 0, corresponding to a cache size of 2^16=65536
-# symbols. At the end of a run doxygen will report the cache usage and suggest
-# the optimal cache size from a speed point of view.
-# Minimum value: 0, maximum value: 9, default value: 0.
-
-LOOKUP_CACHE_SIZE      = 0
-
-# The NUM_PROC_THREADS specifies the number of threads doxygen is allowed to use
-# during processing. When set to 0 doxygen will based this on the number of
-# cores available in the system. You can set it explicitly to a value larger
-# than 0 to get more control over the balance between CPU load and processing
-# speed. At this moment only the input processing can be done using multiple
-# threads. Since this is still an experimental feature the default is set to 1,
-# which effectively disables parallel processing. Please report any issues you
-# encounter. Generating dot graphs in parallel is controlled by the
-# DOT_NUM_THREADS setting.
-# Minimum value: 0, maximum value: 32, default value: 1.
-
-NUM_PROC_THREADS       = 1
-
-# If the TIMESTAMP tag is set different from NO then each generated page will
-# contain the date or date and time when the page was generated. Setting this to
-# NO can help when comparing the output of multiple runs.
-# Possible values are: YES, NO, DATETIME and DATE.
-# The default value is: NO.
-
-TIMESTAMP              = NO
-
-#---------------------------------------------------------------------------
-# Build related configuration options
-#---------------------------------------------------------------------------
-
-# If the EXTRACT_ALL tag is set to YES, doxygen will assume all entities in
-# documentation are documented, even if no documentation was available. Private
-# class members and static file members will be hidden unless the
-# EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES.
-# Note: This will also disable the warnings about undocumented members that are
-# normally produced when WARNINGS is set to YES.
-# The default value is: NO.
-
-EXTRACT_ALL            = YES
-
-# If the EXTRACT_PRIVATE tag is set to YES, all private members of a class will
-# be included in the documentation.
-# The default value is: NO.
-
-EXTRACT_PRIVATE        = YES
-
-# If the EXTRACT_PRIV_VIRTUAL tag is set to YES, documented private virtual
-# methods of a class will be included in the documentation.
-# The default value is: NO.
-
-EXTRACT_PRIV_VIRTUAL   = YES
-
-# If the EXTRACT_PACKAGE tag is set to YES, all members with package or internal
-# scope will be included in the documentation.
-# The default value is: NO.
-
-EXTRACT_PACKAGE        = YES
-
-# If the EXTRACT_STATIC tag is set to YES, all static members of a file will be
-# included in the documentation.
-# The default value is: NO.
-
-EXTRACT_STATIC         = YES
-
-# If the EXTRACT_LOCAL_CLASSES tag is set to YES, classes (and structs) defined
-# locally in source files will be included in the documentation. If set to NO,
-# only classes defined in header files are included. Does not have any effect
-# for Java sources.
-# The default value is: YES.
-
-EXTRACT_LOCAL_CLASSES  = YES
-
-# This flag is only useful for Objective-C code. If set to YES, local methods,
-# which are defined in the implementation section but not in the interface are
-# included in the documentation. If set to NO, only methods in the interface are
-# included.
-# The default value is: NO.
-
-EXTRACT_LOCAL_METHODS  = YES
-
-# If this flag is set to YES, the members of anonymous namespaces will be
-# extracted and appear in the documentation as a namespace called
-# 'anonymous_namespace{file}', where file will be replaced with the base name of
-# the file that contains the anonymous namespace. By default anonymous namespace
-# are hidden.
-# The default value is: NO.
-
-EXTRACT_ANON_NSPACES   = YES
-
-# If this flag is set to YES, the name of an unnamed parameter in a declaration
-# will be determined by the corresponding definition. By default unnamed
-# parameters remain unnamed in the output.
-# The default value is: YES.
-
-RESOLVE_UNNAMED_PARAMS = YES
-
-# If the HIDE_UNDOC_MEMBERS tag is set to YES, doxygen will hide all
-# undocumented members inside documented classes or files. If set to NO these
-# members will be included in the various overviews, but no documentation
-# section is generated. This option has no effect if EXTRACT_ALL is enabled.
-# The default value is: NO.
-
-HIDE_UNDOC_MEMBERS     = NO
-
-# If the HIDE_UNDOC_CLASSES tag is set to YES, doxygen will hide all
-# undocumented classes that are normally visible in the class hierarchy. If set
-# to NO, these classes will be included in the various overviews. This option
-# will also hide undocumented C++ concepts if enabled. This option has no effect
-# if EXTRACT_ALL is enabled.
-# The default value is: NO.
-
-HIDE_UNDOC_CLASSES     = NO
-
-# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, doxygen will hide all friend
-# declarations. If set to NO, these declarations will be included in the
-# documentation.
-# The default value is: NO.
-
-HIDE_FRIEND_COMPOUNDS  = NO
-
-# If the HIDE_IN_BODY_DOCS tag is set to YES, doxygen will hide any
-# documentation blocks found inside the body of a function. If set to NO, these
-# blocks will be appended to the function's detailed documentation block.
-# The default value is: NO.
-
-HIDE_IN_BODY_DOCS      = NO
-
-# The INTERNAL_DOCS tag determines if documentation that is typed after a
-# \internal command is included. If the tag is set to NO then the documentation
-# will be excluded. Set it to YES to include the internal documentation.
-# The default value is: NO.
-
-INTERNAL_DOCS          = NO
-
-# With the correct setting of option CASE_SENSE_NAMES doxygen will better be
-# able to match the capabilities of the underlying filesystem. In case the
-# filesystem is case sensitive (i.e. it supports files in the same directory
-# whose names only differ in casing), the option must be set to YES to properly
-# deal with such files in case they appear in the input. For filesystems that
-# are not case sensitive the option should be set to NO to properly deal with
-# output files written for symbols that only differ in casing, such as for two
-# classes, one named CLASS and the other named Class, and to also support
-# references to files without having to specify the exact matching casing. On
-# Windows (including Cygwin) and MacOS, users should typically set this option
-# to NO, whereas on Linux or other Unix flavors it should typically be set to
-# YES.
-# Possible values are: SYSTEM, NO and YES.
-# The default value is: SYSTEM.
-
-CASE_SENSE_NAMES       = SYSTEM
-
-# If the HIDE_SCOPE_NAMES tag is set to NO then doxygen will show members with
-# their full class and namespace scopes in the documentation. If set to YES, the
-# scope will be hidden.
-# The default value is: NO.
-
-HIDE_SCOPE_NAMES       = NO
-
-# If the HIDE_COMPOUND_REFERENCE tag is set to NO (default) then doxygen will
-# append additional text to a page's title, such as Class Reference. If set to
-# YES the compound reference will be hidden.
-# The default value is: NO.
-
-HIDE_COMPOUND_REFERENCE= NO
-
-# If the SHOW_HEADERFILE tag is set to YES then the documentation for a class
-# will show which file needs to be included to use the class.
-# The default value is: YES.
-
-SHOW_HEADERFILE        = YES
-
-# If the SHOW_INCLUDE_FILES tag is set to YES then doxygen will put a list of
-# the files that are included by a file in the documentation of that file.
-# The default value is: YES.
-
-SHOW_INCLUDE_FILES     = YES
-
-# If the SHOW_GROUPED_MEMB_INC tag is set to YES then Doxygen will add for each
-# grouped member an include statement to the documentation, telling the reader
-# which file to include in order to use the member.
-# The default value is: NO.
-
-SHOW_GROUPED_MEMB_INC  = NO
-
-# If the FORCE_LOCAL_INCLUDES tag is set to YES then doxygen will list include
-# files with double quotes in the documentation rather than with sharp brackets.
-# The default value is: NO.
-
-FORCE_LOCAL_INCLUDES   = NO
-
-# If the INLINE_INFO tag is set to YES then a tag [inline] is inserted in the
-# documentation for inline members.
-# The default value is: YES.
-
-INLINE_INFO            = YES
-
-# If the SORT_MEMBER_DOCS tag is set to YES then doxygen will sort the
-# (detailed) documentation of file and class members alphabetically by member
-# name. If set to NO, the members will appear in declaration order.
-# The default value is: YES.
-
-SORT_MEMBER_DOCS       = YES
-
-# If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the brief
-# descriptions of file, namespace and class members alphabetically by member
-# name. If set to NO, the members will appear in declaration order. Note that
-# this will also influence the order of the classes in the class list.
-# The default value is: NO.
-
-SORT_BRIEF_DOCS        = NO
-
-# If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen will sort the
-# (brief and detailed) documentation of class members so that constructors and
-# destructors are listed first. If set to NO the constructors will appear in the
-# respective orders defined by SORT_BRIEF_DOCS and SORT_MEMBER_DOCS.
-# Note: If SORT_BRIEF_DOCS is set to NO this option is ignored for sorting brief
-# member documentation.
-# Note: If SORT_MEMBER_DOCS is set to NO this option is ignored for sorting
-# detailed member documentation.
-# The default value is: NO.
-
-SORT_MEMBERS_CTORS_1ST = NO
-
-# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the hierarchy
-# of group names into alphabetical order. If set to NO the group names will
-# appear in their defined order.
-# The default value is: NO.
-
-SORT_GROUP_NAMES       = NO
-
-# If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be sorted by
-# fully-qualified names, including namespaces. If set to NO, the class list will
-# be sorted only by class name, not including the namespace part.
-# Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES.
-# Note: This option applies only to the class list, not to the alphabetical
-# list.
-# The default value is: NO.
-
-SORT_BY_SCOPE_NAME     = NO
-
-# If the STRICT_PROTO_MATCHING option is enabled and doxygen fails to do proper
-# type resolution of all parameters of a function it will reject a match between
-# the prototype and the implementation of a member function even if there is
-# only one candidate or it is obvious which candidate to choose by doing a
-# simple string match. By disabling STRICT_PROTO_MATCHING doxygen will still
-# accept a match between prototype and implementation in such cases.
-# The default value is: NO.
-
-STRICT_PROTO_MATCHING  = NO
-
-# The GENERATE_TODOLIST tag can be used to enable (YES) or disable (NO) the todo
-# list. This list is created by putting \todo commands in the documentation.
-# The default value is: YES.
-
-GENERATE_TODOLIST      = YES
-
-# The GENERATE_TESTLIST tag can be used to enable (YES) or disable (NO) the test
-# list. This list is created by putting \test commands in the documentation.
-# The default value is: YES.
-
-GENERATE_TESTLIST      = YES
-
-# The GENERATE_BUGLIST tag can be used to enable (YES) or disable (NO) the bug
-# list. This list is created by putting \bug commands in the documentation.
-# The default value is: YES.
-
-GENERATE_BUGLIST       = YES
-
-# The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or disable (NO)
-# the deprecated list. This list is created by putting \deprecated commands in
-# the documentation.
-# The default value is: YES.
-
-GENERATE_DEPRECATEDLIST= YES
-
-# The ENABLED_SECTIONS tag can be used to enable conditional documentation
-# sections, marked by \if <section_label> ... \endif and \cond <section_label>
-# ... \endcond blocks.
-
-ENABLED_SECTIONS       =
-
-# The MAX_INITIALIZER_LINES tag determines the maximum number of lines that the
-# initial value of a variable or macro / define can have for it to appear in the
-# documentation. If the initializer consists of more lines than specified here
-# it will be hidden. Use a value of 0 to hide initializers completely. The
-# appearance of the value of individual variables and macros / defines can be
-# controlled using \showinitializer or \hideinitializer command in the
-# documentation regardless of this setting.
-# Minimum value: 0, maximum value: 10000, default value: 30.
-
-MAX_INITIALIZER_LINES  = 30
-
-# Set the SHOW_USED_FILES tag to NO to disable the list of files generated at
-# the bottom of the documentation of classes and structs. If set to YES, the
-# list will mention the files that were used to generate the documentation.
-# The default value is: YES.
-
-SHOW_USED_FILES        = YES
-
-# Set the SHOW_FILES tag to NO to disable the generation of the Files page. This
-# will remove the Files entry from the Quick Index and from the Folder Tree View
-# (if specified).
-# The default value is: YES.
-
-SHOW_FILES             = YES
-
-# Set the SHOW_NAMESPACES tag to NO to disable the generation of the Namespaces
-# page. This will remove the Namespaces entry from the Quick Index and from the
-# Folder Tree View (if specified).
-# The default value is: YES.
-
-SHOW_NAMESPACES        = YES
-
-# The FILE_VERSION_FILTER tag can be used to specify a program or script that
-# doxygen should invoke to get the current version for each file (typically from
-# the version control system). Doxygen will invoke the program by executing (via
-# popen()) the command command input-file, where command is the value of the
-# FILE_VERSION_FILTER tag, and input-file is the name of an input file provided
-# by doxygen. Whatever the program writes to standard output is used as the file
-# version. For an example see the documentation.
-
-FILE_VERSION_FILTER    =
-
-# The LAYOUT_FILE tag can be used to specify a layout file which will be parsed
-# by doxygen. The layout file controls the global structure of the generated
-# output files in an output format independent way. To create the layout file
-# that represents doxygen's defaults, run doxygen with the -l option. You can
-# optionally specify a file name after the option, if omitted DoxygenLayout.xml
-# will be used as the name of the layout file. See also section "Changing the
-# layout of pages" for information.
-#
-# Note that if you run doxygen from a directory containing a file called
-# DoxygenLayout.xml, doxygen will parse it automatically even if the LAYOUT_FILE
-# tag is left empty.
-
-LAYOUT_FILE            =
-
-# The CITE_BIB_FILES tag can be used to specify one or more bib files containing
-# the reference definitions. This must be a list of .bib files. The .bib
-# extension is automatically appended if omitted. This requires the bibtex tool
-# to be installed. See also https://en.wikipedia.org/wiki/BibTeX for more info.
-# For LaTeX the style of the bibliography can be controlled using
-# LATEX_BIB_STYLE. To use this feature you need bibtex and perl available in the
-# search path. See also \cite for info how to create references.
-
-CITE_BIB_FILES         = literature.bib
-
-#---------------------------------------------------------------------------
-# Configuration options related to warning and progress messages
-#---------------------------------------------------------------------------
-
-# The QUIET tag can be used to turn on/off the messages that are generated to
-# standard output by doxygen. If QUIET is set to YES this implies that the
-# messages are off.
-# The default value is: NO.
-
-QUIET                  = NO
-
-# The WARNINGS tag can be used to turn on/off the warning messages that are
-# generated to standard error (stderr) by doxygen. If WARNINGS is set to YES
-# this implies that the warnings are on.
-#
-# Tip: Turn warnings on while writing the documentation.
-# The default value is: YES.
-
-WARNINGS               = YES
-
-# If the WARN_IF_UNDOCUMENTED tag is set to YES then doxygen will generate
-# warnings for undocumented members. If EXTRACT_ALL is set to YES then this flag
-# will automatically be disabled.
-# The default value is: YES.
-
-WARN_IF_UNDOCUMENTED   = YES
-
-# If the WARN_IF_DOC_ERROR tag is set to YES, doxygen will generate warnings for
-# potential errors in the documentation, such as documenting some parameters in
-# a documented function twice, or documenting parameters that don't exist or
-# using markup commands wrongly.
-# The default value is: YES.
-
-WARN_IF_DOC_ERROR      = YES
-
-# If WARN_IF_INCOMPLETE_DOC is set to YES, doxygen will warn about incomplete
-# function parameter documentation. If set to NO, doxygen will accept that some
-# parameters have no documentation without warning.
-# The default value is: YES.
-
-WARN_IF_INCOMPLETE_DOC = YES
-
-# This WARN_NO_PARAMDOC option can be enabled to get warnings for functions that
-# are documented, but have no documentation for their parameters or return
-# value. If set to NO, doxygen will only warn about wrong parameter
-# documentation, but not about the absence of documentation. If EXTRACT_ALL is
-# set to YES then this flag will automatically be disabled. See also
-# WARN_IF_INCOMPLETE_DOC
-# The default value is: NO.
-
-WARN_NO_PARAMDOC       = NO
-
-# If WARN_IF_UNDOC_ENUM_VAL option is set to YES, doxygen will warn about
-# undocumented enumeration values. If set to NO, doxygen will accept
-# undocumented enumeration values. If EXTRACT_ALL is set to YES then this flag
-# will automatically be disabled.
-# The default value is: NO.
-
-WARN_IF_UNDOC_ENUM_VAL = NO
-
-# If the WARN_AS_ERROR tag is set to YES then doxygen will immediately stop when
-# a warning is encountered. If the WARN_AS_ERROR tag is set to FAIL_ON_WARNINGS
-# then doxygen will continue running as if WARN_AS_ERROR tag is set to NO, but
-# at the end of the doxygen process doxygen will return with a non-zero status.
-# If the WARN_AS_ERROR tag is set to FAIL_ON_WARNINGS_PRINT then doxygen behaves
-# like FAIL_ON_WARNINGS but in case no WARN_LOGFILE is defined doxygen will not
-# write the warning messages in between other messages but write them at the end
-# of a run, in case a WARN_LOGFILE is defined the warning messages will be
-# besides being in the defined file also be shown at the end of a run, unless
-# the WARN_LOGFILE is defined as - i.e. standard output (stdout) in that case
-# the behavior will remain as with the setting FAIL_ON_WARNINGS.
-# Possible values are: NO, YES, FAIL_ON_WARNINGS and FAIL_ON_WARNINGS_PRINT.
-# The default value is: NO.
-
-WARN_AS_ERROR          = NO
-
-# The WARN_FORMAT tag determines the format of the warning messages that doxygen
-# can produce. The string should contain the $file, $line, and $text tags, which
-# will be replaced by the file and line number from which the warning originated
-# and the warning text. Optionally the format may contain $version, which will
-# be replaced by the version of the file (if it could be obtained via
-# FILE_VERSION_FILTER)
-# See also: WARN_LINE_FORMAT
-# The default value is: $file:$line: $text.
-
-WARN_FORMAT            = "$file:$line: $text"
-
-# In the $text part of the WARN_FORMAT command it is possible that a reference
-# to a more specific place is given. To make it easier to jump to this place
-# (outside of doxygen) the user can define a custom "cut" / "paste" string.
-# Example:
-# WARN_LINE_FORMAT = "'vi $file +$line'"
-# See also: WARN_FORMAT
-# The default value is: at line $line of file $file.
-
-WARN_LINE_FORMAT       = "at line $line of file $file"
-
-# The WARN_LOGFILE tag can be used to specify a file to which warning and error
-# messages should be written. If left blank the output is written to standard
-# error (stderr). In case the file specified cannot be opened for writing the
-# warning and error messages are written to standard error. When as file - is
-# specified the warning and error messages are written to standard output
-# (stdout).
-
-WARN_LOGFILE           =
-
-#---------------------------------------------------------------------------
-# Configuration options related to the input files
-#---------------------------------------------------------------------------
-
-# The INPUT tag is used to specify the files and/or directories that contain
-# documented source files. You may enter file names like myfile.cpp or
-# directories like /usr/src/myproject. Separate the files or directories with
-# spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
-# Note: If this tag is empty the current directory is searched.
-
-INPUT                  = @SOURCE_DIR@
-
-# This tag can be used to specify the character encoding of the source files
-# that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
-# libiconv (or the iconv built into libc) for the transcoding. See the libiconv
-# documentation (see:
-# https://www.gnu.org/software/libiconv/) for the list of possible encodings.
-# See also: INPUT_FILE_ENCODING
-# The default value is: UTF-8.
-
-INPUT_ENCODING         = UTF-8
-
-# This tag can be used to specify the character encoding of the source files
-# that doxygen parses The INPUT_FILE_ENCODING tag can be used to specify
-# character encoding on a per file pattern basis. Doxygen will compare the file
-# name with each pattern and apply the encoding instead of the default
-# INPUT_ENCODING) if there is a match. The character encodings are a list of the
-# form: pattern=encoding (like *.php=ISO-8859-1). See cfg_input_encoding
-# "INPUT_ENCODING" for further information on supported encodings.
-
-INPUT_FILE_ENCODING    =
-
-# If the value of the INPUT tag contains directories, you can use the
-# FILE_PATTERNS tag to specify one or more wildcard patterns (like *.cpp and
-# *.h) to filter out the source-files in the directories.
-#
-# Note that for custom extensions or not directly supported extensions you also
-# need to set EXTENSION_MAPPING for the extension otherwise the files are not
-# read by doxygen.
-#
-# Note the list of default checked file patterns might differ from the list of
-# default file extension mappings.
-#
-# If left blank the following patterns are tested:*.c, *.cc, *.cxx, *.cxxm,
-# *.cpp, *.cppm, *.c++, *.c++m, *.java, *.ii, *.ixx, *.ipp, *.i++, *.inl, *.idl,
-# *.ddl, *.odl, *.h, *.hh, *.hxx, *.hpp, *.h++, *.ixx, *.l, *.cs, *.d, *.php,
-# *.php4, *.php5, *.phtml, *.inc, *.m, *.markdown, *.md, *.mm, *.dox (to be
-# provided as doxygen C comment), *.py, *.pyw, *.f90, *.f95, *.f03, *.f08,
-# *.f18, *.f, *.for, *.vhd, *.vhdl, *.ucf, *.qsf and *.ice.
-
-FILE_PATTERNS          = *.c \
-                         *.cc \
-                         *.cxx \
-                         *.cxxm \
-                         *.cpp \
-                         *.cppm \
-                         *.c++ \
-                         *.c++m \
-                         *.java \
-                         *.ii \
-                         *.ixx \
-                         *.ipp \
-                         *.i++ \
-                         *.inl \
-                         *.idl \
-                         *.ddl \
-                         *.odl \
-                         *.h \
-                         *.hh \
-                         *.hxx \
-                         *.hpp \
-                         *.h++ \
-                         *.ixx \
-                         *.l \
-                         *.cs \
-                         *.d \
-                         *.php \
-                         *.php4 \
-                         *.php5 \
-                         *.phtml \
-                         *.inc \
-                         *.m \
-                         *.markdown \
-                         *.md \
-                         *.mm \
-                         *.dox \
-                         *.py \
-                         *.pyw \
-                         *.f90 \
-                         *.f95 \
-                         *.f03 \
-                         *.f08 \
-                         *.f18 \
-                         *.f \
-                         *.for \
-                         *.vhd \
-                         *.vhdl \
-                         *.ucf \
-                         *.qsf \
-                         *.ice
-
-# The RECURSIVE tag can be used to specify whether or not subdirectories should
-# be searched for input files as well.
-# The default value is: NO.
-
-RECURSIVE              = YES
-
-# The EXCLUDE tag can be used to specify files and/or directories that should be
-# excluded from the INPUT source files. This way you can easily exclude a
-# subdirectory from a directory tree whose root is specified with the INPUT tag.
-#
-# Note that relative paths are relative to the directory from which doxygen is
-# run.
-
-EXCLUDE                =
-
-# The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
-# directories that are symbolic links (a Unix file system feature) are excluded
-# from the input.
-# The default value is: NO.
-
-EXCLUDE_SYMLINKS       = NO
-
-# If the value of the INPUT tag contains directories, you can use the
-# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude
-# certain files from those directories.
-#
-# Note that the wildcards are matched against the file with absolute path, so to
-# exclude all test directories for example use the pattern */test/*
-
-EXCLUDE_PATTERNS       =
-
-# The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
-# (namespaces, classes, functions, etc.) that should be excluded from the
-# output. The symbol name can be a fully qualified name, a word, or if the
-# wildcard * is used, a substring. Examples: ANamespace, AClass,
-# ANamespace::AClass, ANamespace::*Test
-
-EXCLUDE_SYMBOLS        =
-
-# The EXAMPLE_PATH tag can be used to specify one or more files or directories
-# that contain example code fragments that are included (see the \include
-# command).
-
-EXAMPLE_PATH           =
-
-# If the value of the EXAMPLE_PATH tag contains directories, you can use the
-# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp and
-# *.h) to filter out the source-files in the directories. If left blank all
-# files are included.
-
-EXAMPLE_PATTERNS       = *
-
-# If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be
-# searched for input files to be used with the \include or \dontinclude commands
-# irrespective of the value of the RECURSIVE tag.
-# The default value is: NO.
-
-EXAMPLE_RECURSIVE      = NO
-
-# The IMAGE_PATH tag can be used to specify one or more files or directories
-# that contain images that are to be included in the documentation (see the
-# \image command).
-
-IMAGE_PATH             = ./img/
-
-# The INPUT_FILTER tag can be used to specify a program that doxygen should
-# invoke to filter for each input file. Doxygen will invoke the filter program
-# by executing (via popen()) the command:
-#
-# <filter> <input-file>
-#
-# where <filter> is the value of the INPUT_FILTER tag, and <input-file> is the
-# name of an input file. Doxygen will then use the output that the filter
-# program writes to standard output. If FILTER_PATTERNS is specified, this tag
-# will be ignored.
-#
-# Note that the filter must not add or remove lines; it is applied before the
-# code is scanned, but not when the output code is generated. If lines are added
-# or removed, the anchors will not be placed correctly.
-#
-# Note that doxygen will use the data processed and written to standard output
-# for further processing, therefore nothing else, like debug statements or used
-# commands (so in case of a Windows batch file always use @echo OFF), should be
-# written to standard output.
-#
-# Note that for custom extensions or not directly supported extensions you also
-# need to set EXTENSION_MAPPING for the extension otherwise the files are not
-# properly processed by doxygen.
-
-INPUT_FILTER           =
-
-# The FILTER_PATTERNS tag can be used to specify filters on a per file pattern
-# basis. Doxygen will compare the file name with each pattern and apply the
-# filter if there is a match. The filters are a list of the form: pattern=filter
-# (like *.cpp=my_cpp_filter). See INPUT_FILTER for further information on how
-# filters are used. If the FILTER_PATTERNS tag is empty or if none of the
-# patterns match the file name, INPUT_FILTER is applied.
-#
-# Note that for custom extensions or not directly supported extensions you also
-# need to set EXTENSION_MAPPING for the extension otherwise the files are not
-# properly processed by doxygen.
-
-FILTER_PATTERNS        =
-
-# If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using
-# INPUT_FILTER) will also be used to filter the input files that are used for
-# producing the source files to browse (i.e. when SOURCE_BROWSER is set to YES).
-# The default value is: NO.
-
-FILTER_SOURCE_FILES    = NO
-
-# The FILTER_SOURCE_PATTERNS tag can be used to specify source filters per file
-# pattern. A pattern will override the setting for FILTER_PATTERN (if any) and
-# it is also possible to disable source filtering for a specific pattern using
-# *.ext= (so without naming a filter).
-# This tag requires that the tag FILTER_SOURCE_FILES is set to YES.
-
-FILTER_SOURCE_PATTERNS =
-
-# If the USE_MDFILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page
-# (index.html). This can be useful if you have a project on for instance GitHub
-# and want to reuse the introduction page also for the doxygen output.
-
-USE_MDFILE_AS_MAINPAGE =
-
-# The Fortran standard specifies that for fixed formatted Fortran code all
-# characters from position 72 are to be considered as comment. A common
-# extension is to allow longer lines before the automatic comment starts. The
-# setting FORTRAN_COMMENT_AFTER will also make it possible that longer lines can
-# be processed before the automatic comment starts.
-# Minimum value: 7, maximum value: 10000, default value: 72.
-
-FORTRAN_COMMENT_AFTER  = 72
-
-#---------------------------------------------------------------------------
-# Configuration options related to source browsing
-#---------------------------------------------------------------------------
-
-# If the SOURCE_BROWSER tag is set to YES then a list of source files will be
-# generated. Documented entities will be cross-referenced with these sources.
-#
-# Note: To get rid of all source code in the generated output, make sure that
-# also VERBATIM_HEADERS is set to NO.
-# The default value is: NO.
-
-SOURCE_BROWSER         = NO
-
-# Setting the INLINE_SOURCES tag to YES will include the body of functions,
-# classes and enums directly into the documentation.
-# The default value is: NO.
-
-INLINE_SOURCES         = NO
-
-# Setting the STRIP_CODE_COMMENTS tag to YES will instruct doxygen to hide any
-# special comment blocks from generated source code fragments. Normal C, C++ and
-# Fortran comments will always remain visible.
-# The default value is: YES.
-
-STRIP_CODE_COMMENTS    = YES
-
-# If the REFERENCED_BY_RELATION tag is set to YES then for each documented
-# entity all documented functions referencing it will be listed.
-# The default value is: NO.
-
-REFERENCED_BY_RELATION = NO
-
-# If the REFERENCES_RELATION tag is set to YES then for each documented function
-# all documented entities called/used by that function will be listed.
-# The default value is: NO.
-
-REFERENCES_RELATION    = NO
-
-# If the REFERENCES_LINK_SOURCE tag is set to YES and SOURCE_BROWSER tag is set
-# to YES then the hyperlinks from functions in REFERENCES_RELATION and
-# REFERENCED_BY_RELATION lists will link to the source code. Otherwise they will
-# link to the documentation.
-# The default value is: YES.
-
-REFERENCES_LINK_SOURCE = YES
-
-# If SOURCE_TOOLTIPS is enabled (the default) then hovering a hyperlink in the
-# source code will show a tooltip with additional information such as prototype,
-# brief description and links to the definition and documentation. Since this
-# will make the HTML file larger and loading of large files a bit slower, you
-# can opt to disable this feature.
-# The default value is: YES.
-# This tag requires that the tag SOURCE_BROWSER is set to YES.
-
-SOURCE_TOOLTIPS        = YES
-
-# If the USE_HTAGS tag is set to YES then the references to source code will
-# point to the HTML generated by the htags(1) tool instead of doxygen built-in
-# source browser. The htags tool is part of GNU's global source tagging system
-# (see https://www.gnu.org/software/global/global.html). You will need version
-# 4.8.6 or higher.
-#
-# To use it do the following:
-# - Install the latest version of global
-# - Enable SOURCE_BROWSER and USE_HTAGS in the configuration file
-# - Make sure the INPUT points to the root of the source tree
-# - Run doxygen as normal
-#
-# Doxygen will invoke htags (and that will in turn invoke gtags), so these
-# tools must be available from the command line (i.e. in the search path).
-#
-# The result: instead of the source browser generated by doxygen, the links to
-# source code will now point to the output of htags.
-# The default value is: NO.
-# This tag requires that the tag SOURCE_BROWSER is set to YES.
-
-USE_HTAGS              = NO
-
-# If the VERBATIM_HEADERS tag is set the YES then doxygen will generate a
-# verbatim copy of the header file for each class for which an include is
-# specified. Set to NO to disable this.
-# See also: Section \class.
-# The default value is: YES.
-
-VERBATIM_HEADERS       = YES
-
-# If the CLANG_ASSISTED_PARSING tag is set to YES then doxygen will use the
-# clang parser (see:
-# http://clang.llvm.org/) for more accurate parsing at the cost of reduced
-# performance. This can be particularly helpful with template rich C++ code for
-# which doxygen's built-in parser lacks the necessary type information.
-# Note: The availability of this option depends on whether or not doxygen was
-# generated with the -Duse_libclang=ON option for CMake.
-# The default value is: NO.
-
-CLANG_ASSISTED_PARSING = NO
-
-# If the CLANG_ASSISTED_PARSING tag is set to YES and the CLANG_ADD_INC_PATHS
-# tag is set to YES then doxygen will add the directory of each input to the
-# include path.
-# The default value is: YES.
-# This tag requires that the tag CLANG_ASSISTED_PARSING is set to YES.
-
-CLANG_ADD_INC_PATHS    = YES
-
-# If clang assisted parsing is enabled you can provide the compiler with command
-# line options that you would normally use when invoking the compiler. Note that
-# the include paths will already be set by doxygen for the files and directories
-# specified with INPUT and INCLUDE_PATH.
-# This tag requires that the tag CLANG_ASSISTED_PARSING is set to YES.
-
-CLANG_OPTIONS          =
-
-# If clang assisted parsing is enabled you can provide the clang parser with the
-# path to the directory containing a file called compile_commands.json. This
-# file is the compilation database (see:
-# http://clang.llvm.org/docs/HowToSetupToolingForLLVM.html) containing the
-# options used when the source files were built. This is equivalent to
-# specifying the -p option to a clang tool, such as clang-check. These options
-# will then be passed to the parser. Any options specified with CLANG_OPTIONS
-# will be added as well.
-# Note: The availability of this option depends on whether or not doxygen was
-# generated with the -Duse_libclang=ON option for CMake.
-
-CLANG_DATABASE_PATH    =
-#---------------------------------------------------------------------------
-# Configuration options related to the alphabetical class index
-#---------------------------------------------------------------------------
-
-# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index of all
-# compounds will be generated. Enable this if the project contains a lot of
-# classes, structs, unions or interfaces.
-# The default value is: YES.
-
-ALPHABETICAL_INDEX     = YES
-
-# The IGNORE_PREFIX tag can be used to specify a prefix (or a list of prefixes)
-# that should be ignored while generating the index headers. The IGNORE_PREFIX
-# tag works for classes, function and member names. The entity will be placed in
-# the alphabetical list under the first letter of the entity name that remains
-# after removing the prefix.
-# This tag requires that the tag ALPHABETICAL_INDEX is set to YES.
-
-IGNORE_PREFIX          =
-
-#---------------------------------------------------------------------------
-# Configuration options related to the HTML output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_HTML tag is set to YES, doxygen will generate HTML output
-# The default value is: YES.
-
-GENERATE_HTML          = YES
-
-# The HTML_OUTPUT tag is used to specify where the HTML docs will be put. If a
-# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
-# it.
-# The default directory is: html.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_OUTPUT            = ecological_assessment
-
-# The HTML_FILE_EXTENSION tag can be used to specify the file extension for each
-# generated HTML page (for example: .htm, .php, .asp).
-# The default value is: .html.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_FILE_EXTENSION    = .html
-
-# The HTML_HEADER tag can be used to specify a user-defined HTML header file for
-# each generated HTML page. If the tag is left blank doxygen will generate a
-# standard header.
-#
-# To get valid HTML the header file that includes any scripts and style sheets
-# that doxygen needs, which is dependent on the configuration options used (e.g.
-# the setting GENERATE_TREEVIEW). It is highly recommended to start with a
-# default header using
-# doxygen -w html new_header.html new_footer.html new_stylesheet.css
-# YourConfigFile
-# and then modify the file new_header.html. See also section "Doxygen usage"
-# for information on how to generate the default header that doxygen normally
-# uses.
-# Note: The header is subject to change so you typically have to regenerate the
-# default header when upgrading to a newer version of doxygen. For a description
-# of the possible markers and block names see the documentation.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_HEADER            = header.html
-
-# The HTML_FOOTER tag can be used to specify a user-defined HTML footer for each
-# generated HTML page. If the tag is left blank doxygen will generate a standard
-# footer. See HTML_HEADER for more information on how to generate a default
-# footer and what special commands can be used inside the footer. See also
-# section "Doxygen usage" for information on how to generate the default footer
-# that doxygen normally uses.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_FOOTER            =
-
-# The HTML_STYLESHEET tag can be used to specify a user-defined cascading style
-# sheet that is used by each HTML page. It can be used to fine-tune the look of
-# the HTML output. If left blank doxygen will generate a default style sheet.
-# See also section "Doxygen usage" for information on how to generate the style
-# sheet that doxygen normally uses.
-# Note: It is recommended to use HTML_EXTRA_STYLESHEET instead of this tag, as
-# it is more robust and this tag (HTML_STYLESHEET) will in the future become
-# obsolete.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_STYLESHEET        =
-
-# The HTML_EXTRA_STYLESHEET tag can be used to specify additional user-defined
-# cascading style sheets that are included after the standard style sheets
-# created by doxygen. Using this option one can overrule certain style aspects.
-# This is preferred over using HTML_STYLESHEET since it does not replace the
-# standard style sheet and is therefore more robust against future updates.
-# Doxygen will copy the style sheet files to the output directory.
-# Note: The order of the extra style sheet files is of importance (e.g. the last
-# style sheet in the list overrules the setting of the previous ones in the
-# list).
-# Note: Since the styling of scrollbars can currently not be overruled in
-# Webkit/Chromium, the styling will be left out of the default doxygen.css if
-# one or more extra stylesheets have been specified. So if scrollbar
-# customization is desired it has to be added explicitly. For an example see the
-# documentation.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_EXTRA_STYLESHEET  = ../../libs/extern/doxygen-awesome-css/doxygen-awesome.css
-
-# The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
-# other source files which should be copied to the HTML output directory. Note
-# that these files will be copied to the base HTML output directory. Use the
-# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
-# files. In the HTML_STYLESHEET file, use the file name only. Also note that the
-# files will be copied as-is; there are no commands or markers available.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_EXTRA_FILES       = ../../libs/extern/doxygen-awesome-css/doxygen-awesome-darkmode-toggle.js\
-    ../../libs/extern/doxygen-awesome-css/doxygen-awesome-tabs.js\
-    ../../libs/extern/doxygen-awesome-css/doxygen-awesome-fragment-copy-button.js
-
-# The HTML_COLORSTYLE tag can be used to specify if the generated HTML output
-# should be rendered with a dark or light theme.
-# Possible values are: LIGHT always generate light mode output, DARK always
-# generate dark mode output, AUTO_LIGHT automatically set the mode according to
-# the user preference, use light mode if no preference is set (the default),
-# AUTO_DARK automatically set the mode according to the user preference, use
-# dark mode if no preference is set and TOGGLE allow to user to switch between
-# light and dark mode via a button.
-# The default value is: AUTO_LIGHT.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_COLORSTYLE        = LIGHT
-
-# The HTML_COLORSTYLE_HUE tag controls the color of the HTML output. Doxygen
-# will adjust the colors in the style sheet and background images according to
-# this color. Hue is specified as an angle on a color-wheel, see
-# https://en.wikipedia.org/wiki/Hue for more information. For instance the value
-# 0 represents red, 60 is yellow, 120 is green, 180 is cyan, 240 is blue, 300
-# purple, and 360 is red again.
-# Minimum value: 0, maximum value: 359, default value: 220.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_COLORSTYLE_HUE    = 220
-
-# The HTML_COLORSTYLE_SAT tag controls the purity (or saturation) of the colors
-# in the HTML output. For a value of 0 the output will use gray-scales only. A
-# value of 255 will produce the most vivid colors.
-# Minimum value: 0, maximum value: 255, default value: 100.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_COLORSTYLE_SAT    = 100
-
-# The HTML_COLORSTYLE_GAMMA tag controls the gamma correction applied to the
-# luminance component of the colors in the HTML output. Values below 100
-# gradually make the output lighter, whereas values above 100 make the output
-# darker. The value divided by 100 is the actual gamma applied, so 80 represents
-# a gamma of 0.8, The value 220 represents a gamma of 2.2, and 100 does not
-# change the gamma.
-# Minimum value: 40, maximum value: 240, default value: 80.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_COLORSTYLE_GAMMA  = 80
-
-# If the HTML_DYNAMIC_MENUS tag is set to YES then the generated HTML
-# documentation will contain a main index with vertical navigation menus that
-# are dynamically created via JavaScript. If disabled, the navigation index will
-# consists of multiple levels of tabs that are statically embedded in every HTML
-# page. Disable this option to support browsers that do not have JavaScript,
-# like the Qt help browser.
-# The default value is: YES.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_DYNAMIC_MENUS     = YES
-
-# If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML
-# documentation will contain sections that can be hidden and shown after the
-# page has loaded.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_DYNAMIC_SECTIONS  = NO
-
-# If the HTML_CODE_FOLDING tag is set to YES then classes and functions can be
-# dynamically folded and expanded in the generated HTML source code.
-# The default value is: YES.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_CODE_FOLDING      = YES
-
-# With HTML_INDEX_NUM_ENTRIES one can control the preferred number of entries
-# shown in the various tree structured indices initially; the user can expand
-# and collapse entries dynamically later on. Doxygen will expand the tree to
-# such a level that at most the specified number of entries are visible (unless
-# a fully collapsed tree already exceeds this amount). So setting the number of
-# entries 1 will produce a full collapsed tree by default. 0 is a special value
-# representing an infinite number of entries and will result in a full expanded
-# tree by default.
-# Minimum value: 0, maximum value: 9999, default value: 100.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_INDEX_NUM_ENTRIES = 100
-
-# If the GENERATE_DOCSET tag is set to YES, additional index files will be
-# generated that can be used as input for Apple's Xcode 3 integrated development
-# environment (see:
-# https://developer.apple.com/xcode/), introduced with OSX 10.5 (Leopard). To
-# create a documentation set, doxygen will generate a Makefile in the HTML
-# output directory. Running make will produce the docset in that directory and
-# running make install will install the docset in
-# ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find it at
-# startup. See https://developer.apple.com/library/archive/featuredarticles/Doxy
-# genXcode/_index.html for more information.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-GENERATE_DOCSET        = NO
-
-# This tag determines the name of the docset feed. A documentation feed provides
-# an umbrella under which multiple documentation sets from a single provider
-# (such as a company or product suite) can be grouped.
-# The default value is: Doxygen generated docs.
-# This tag requires that the tag GENERATE_DOCSET is set to YES.
-
-DOCSET_FEEDNAME        = "Doxygen generated docs"
-
-# This tag determines the URL of the docset feed. A documentation feed provides
-# an umbrella under which multiple documentation sets from a single provider
-# (such as a company or product suite) can be grouped.
-# This tag requires that the tag GENERATE_DOCSET is set to YES.
-
-DOCSET_FEEDURL         =
-
-# This tag specifies a string that should uniquely identify the documentation
-# set bundle. This should be a reverse domain-name style string, e.g.
-# com.mycompany.MyDocSet. Doxygen will append .docset to the name.
-# The default value is: org.doxygen.Project.
-# This tag requires that the tag GENERATE_DOCSET is set to YES.
-
-DOCSET_BUNDLE_ID       = org.doxygen.Project
-
-# The DOCSET_PUBLISHER_ID tag specifies a string that should uniquely identify
-# the documentation publisher. This should be a reverse domain-name style
-# string, e.g. com.mycompany.MyDocSet.documentation.
-# The default value is: org.doxygen.Publisher.
-# This tag requires that the tag GENERATE_DOCSET is set to YES.
-
-DOCSET_PUBLISHER_ID    = org.doxygen.Publisher
-
-# The DOCSET_PUBLISHER_NAME tag identifies the documentation publisher.
-# The default value is: Publisher.
-# This tag requires that the tag GENERATE_DOCSET is set to YES.
-
-DOCSET_PUBLISHER_NAME  = Publisher
-
-# If the GENERATE_HTMLHELP tag is set to YES then doxygen generates three
-# additional HTML index files: index.hhp, index.hhc, and index.hhk. The
-# index.hhp is a project file that can be read by Microsoft's HTML Help Workshop
-# on Windows. In the beginning of 2021 Microsoft took the original page, with
-# a.o. the download links, offline the HTML help workshop was already many years
-# in maintenance mode). You can download the HTML help workshop from the web
-# archives at Installation executable (see:
-# http://web.archive.org/web/20160201063255/http://download.microsoft.com/downlo
-# ad/0/A/9/0A939EF6-E31C-430F-A3DF-DFAE7960D564/htmlhelp.exe).
-#
-# The HTML Help Workshop contains a compiler that can convert all HTML output
-# generated by doxygen into a single compiled HTML file (.chm). Compiled HTML
-# files are now used as the Windows 98 help format, and will replace the old
-# Windows help format (.hlp) on all Windows platforms in the future. Compressed
-# HTML files also contain an index, a table of contents, and you can search for
-# words in the documentation. The HTML workshop also contains a viewer for
-# compressed HTML files.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-GENERATE_HTMLHELP      = NO
-
-# The CHM_FILE tag can be used to specify the file name of the resulting .chm
-# file. You can add a path in front of the file if the result should not be
-# written to the html output directory.
-# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
-
-CHM_FILE               =
-
-# The HHC_LOCATION tag can be used to specify the location (absolute path
-# including file name) of the HTML help compiler (hhc.exe). If non-empty,
-# doxygen will try to run the HTML help compiler on the generated index.hhp.
-# The file has to be specified with full path.
-# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
-
-HHC_LOCATION           =
-
-# The GENERATE_CHI flag controls if a separate .chi index file is generated
-# (YES) or that it should be included in the main .chm file (NO).
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
-
-GENERATE_CHI           = NO
-
-# The CHM_INDEX_ENCODING is used to encode HtmlHelp index (hhk), content (hhc)
-# and project file content.
-# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
-
-CHM_INDEX_ENCODING     =
-
-# The BINARY_TOC flag controls whether a binary table of contents is generated
-# (YES) or a normal table of contents (NO) in the .chm file. Furthermore it
-# enables the Previous and Next buttons.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
-
-BINARY_TOC             = NO
-
-# The TOC_EXPAND flag can be set to YES to add extra items for group members to
-# the table of contents of the HTML help documentation and to the tree view.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
-
-TOC_EXPAND             = NO
-
-# The SITEMAP_URL tag is used to specify the full URL of the place where the
-# generated documentation will be placed on the server by the user during the
-# deployment of the documentation. The generated sitemap is called sitemap.xml
-# and placed on the directory specified by HTML_OUTPUT. In case no SITEMAP_URL
-# is specified no sitemap is generated. For information about the sitemap
-# protocol see https://www.sitemaps.org
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-SITEMAP_URL            =
-
-# If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and
-# QHP_VIRTUAL_FOLDER are set, an additional index file will be generated that
-# can be used as input for Qt's qhelpgenerator to generate a Qt Compressed Help
-# (.qch) of the generated HTML documentation.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-GENERATE_QHP           = NO
-
-# If the QHG_LOCATION tag is specified, the QCH_FILE tag can be used to specify
-# the file name of the resulting .qch file. The path specified is relative to
-# the HTML output folder.
-# This tag requires that the tag GENERATE_QHP is set to YES.
-
-QCH_FILE               =
-
-# The QHP_NAMESPACE tag specifies the namespace to use when generating Qt Help
-# Project output. For more information please see Qt Help Project / Namespace
-# (see:
-# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#namespace).
-# The default value is: org.doxygen.Project.
-# This tag requires that the tag GENERATE_QHP is set to YES.
-
-QHP_NAMESPACE          = org.doxygen.Project
-
-# The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating Qt
-# Help Project output. For more information please see Qt Help Project / Virtual
-# Folders (see:
-# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#virtual-folders).
-# The default value is: doc.
-# This tag requires that the tag GENERATE_QHP is set to YES.
-
-QHP_VIRTUAL_FOLDER     = doc
-
-# If the QHP_CUST_FILTER_NAME tag is set, it specifies the name of a custom
-# filter to add. For more information please see Qt Help Project / Custom
-# Filters (see:
-# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#custom-filters).
-# This tag requires that the tag GENERATE_QHP is set to YES.
-
-QHP_CUST_FILTER_NAME   =
-
-# The QHP_CUST_FILTER_ATTRS tag specifies the list of the attributes of the
-# custom filter to add. For more information please see Qt Help Project / Custom
-# Filters (see:
-# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#custom-filters).
-# This tag requires that the tag GENERATE_QHP is set to YES.
-
-QHP_CUST_FILTER_ATTRS  =
-
-# The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this
-# project's filter section matches. Qt Help Project / Filter Attributes (see:
-# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#filter-attributes).
-# This tag requires that the tag GENERATE_QHP is set to YES.
-
-QHP_SECT_FILTER_ATTRS  =
-
-# The QHG_LOCATION tag can be used to specify the location (absolute path
-# including file name) of Qt's qhelpgenerator. If non-empty doxygen will try to
-# run qhelpgenerator on the generated .qhp file.
-# This tag requires that the tag GENERATE_QHP is set to YES.
-
-QHG_LOCATION           =
-
-# If the GENERATE_ECLIPSEHELP tag is set to YES, additional index files will be
-# generated, together with the HTML files, they form an Eclipse help plugin. To
-# install this plugin and make it available under the help contents menu in
-# Eclipse, the contents of the directory containing the HTML and XML files needs
-# to be copied into the plugins directory of eclipse. The name of the directory
-# within the plugins directory should be the same as the ECLIPSE_DOC_ID value.
-# After copying Eclipse needs to be restarted before the help appears.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-GENERATE_ECLIPSEHELP   = NO
-
-# A unique identifier for the Eclipse help plugin. When installing the plugin
-# the directory name containing the HTML and XML files should also have this
-# name. Each documentation set should have its own identifier.
-# The default value is: org.doxygen.Project.
-# This tag requires that the tag GENERATE_ECLIPSEHELP is set to YES.
-
-ECLIPSE_DOC_ID         = org.doxygen.Project
-
-# If you want full control over the layout of the generated HTML pages it might
-# be necessary to disable the index and replace it with your own. The
-# DISABLE_INDEX tag can be used to turn on/off the condensed index (tabs) at top
-# of each HTML page. A value of NO enables the index and the value YES disables
-# it. Since the tabs in the index contain the same information as the navigation
-# tree, you can set this option to YES if you also set GENERATE_TREEVIEW to YES.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-DISABLE_INDEX          = NO
-
-# The GENERATE_TREEVIEW tag is used to specify whether a tree-like index
-# structure should be generated to display hierarchical information. If the tag
-# value is set to YES, a side panel will be generated containing a tree-like
-# index structure (just like the one that is generated for HTML Help). For this
-# to work a browser that supports JavaScript, DHTML, CSS and frames is required
-# (i.e. any modern browser). Windows users are probably better off using the
-# HTML help feature. Via custom style sheets (see HTML_EXTRA_STYLESHEET) one can
-# further fine tune the look of the index (see "Fine-tuning the output"). As an
-# example, the default style sheet generated by doxygen has an example that
-# shows how to put an image at the root of the tree instead of the PROJECT_NAME.
-# Since the tree basically has the same information as the tab index, you could
-# consider setting DISABLE_INDEX to YES when enabling this option.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-GENERATE_TREEVIEW      = YES
-
-# When both GENERATE_TREEVIEW and DISABLE_INDEX are set to YES, then the
-# FULL_SIDEBAR option determines if the side bar is limited to only the treeview
-# area (value NO) or if it should extend to the full height of the window (value
-# YES). Setting this to YES gives a layout similar to
-# https://docs.readthedocs.io with more room for contents, but less room for the
-# project logo, title, and description. If either GENERATE_TREEVIEW or
-# DISABLE_INDEX is set to NO, this option has no effect.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-FULL_SIDEBAR           = NO
-
-# The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values that
-# doxygen will group on one line in the generated HTML documentation.
-#
-# Note that a value of 0 will completely suppress the enum values from appearing
-# in the overview section.
-# Minimum value: 0, maximum value: 20, default value: 4.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-ENUM_VALUES_PER_LINE   = 4
-
-# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be used
-# to set the initial width (in pixels) of the frame in which the tree is shown.
-# Minimum value: 0, maximum value: 1500, default value: 250.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-TREEVIEW_WIDTH         = 250
-
-# If the EXT_LINKS_IN_WINDOW option is set to YES, doxygen will open links to
-# external symbols imported via tag files in a separate window.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-EXT_LINKS_IN_WINDOW    = NO
-
-# If the OBFUSCATE_EMAILS tag is set to YES, doxygen will obfuscate email
-# addresses.
-# The default value is: YES.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-OBFUSCATE_EMAILS       = YES
-
-# If the HTML_FORMULA_FORMAT option is set to svg, doxygen will use the pdf2svg
-# tool (see https://github.com/dawbarton/pdf2svg) or inkscape (see
-# https://inkscape.org) to generate formulas as SVG images instead of PNGs for
-# the HTML output. These images will generally look nicer at scaled resolutions.
-# Possible values are: png (the default) and svg (looks nicer but requires the
-# pdf2svg or inkscape tool).
-# The default value is: png.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_FORMULA_FORMAT    = png
-
-# Use this tag to change the font size of LaTeX formulas included as images in
-# the HTML documentation. When you change the font size after a successful
-# doxygen run you need to manually remove any form_*.png images from the HTML
-# output directory to force them to be regenerated.
-# Minimum value: 8, maximum value: 50, default value: 10.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-FORMULA_FONTSIZE       = 10
-
-# The FORMULA_MACROFILE can contain LaTeX \newcommand and \renewcommand commands
-# to create new LaTeX commands to be used in formulas as building blocks. See
-# the section "Including formulas" for details.
-
-FORMULA_MACROFILE      =
-
-# Enable the USE_MATHJAX option to render LaTeX formulas using MathJax (see
-# https://www.mathjax.org) which uses client side JavaScript for the rendering
-# instead of using pre-rendered bitmaps. Use this if you do not have LaTeX
-# installed or if you want to formulas look prettier in the HTML output. When
-# enabled you may also need to install MathJax separately and configure the path
-# to it using the MATHJAX_RELPATH option.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-USE_MATHJAX            = YES
-
-# With MATHJAX_VERSION it is possible to specify the MathJax version to be used.
-# Note that the different versions of MathJax have different requirements with
-# regards to the different settings, so it is possible that also other MathJax
-# settings have to be changed when switching between the different MathJax
-# versions.
-# Possible values are: MathJax_2 and MathJax_3.
-# The default value is: MathJax_2.
-# This tag requires that the tag USE_MATHJAX is set to YES.
-
-MATHJAX_VERSION        = MathJax_2
-
-# When MathJax is enabled you can set the default output format to be used for
-# the MathJax output. For more details about the output format see MathJax
-# version 2 (see:
-# http://docs.mathjax.org/en/v2.7-latest/output.html) and MathJax version 3
-# (see:
-# http://docs.mathjax.org/en/latest/web/components/output.html).
-# Possible values are: HTML-CSS (which is slower, but has the best
-# compatibility. This is the name for Mathjax version 2, for MathJax version 3
-# this will be translated into chtml), NativeMML (i.e. MathML. Only supported
-# for NathJax 2. For MathJax version 3 chtml will be used instead.), chtml (This
-# is the name for Mathjax version 3, for MathJax version 2 this will be
-# translated into HTML-CSS) and SVG.
-# The default value is: HTML-CSS.
-# This tag requires that the tag USE_MATHJAX is set to YES.
-
-MATHJAX_FORMAT         = HTML-CSS
-
-# When MathJax is enabled you need to specify the location relative to the HTML
-# output directory using the MATHJAX_RELPATH option. The destination directory
-# should contain the MathJax.js script. For instance, if the mathjax directory
-# is located at the same level as the HTML output directory, then
-# MATHJAX_RELPATH should be ../mathjax. The default value points to the MathJax
-# Content Delivery Network so you can quickly see the result without installing
-# MathJax. However, it is strongly recommended to install a local copy of
-# MathJax from https://www.mathjax.org before deployment. The default value is:
-# - in case of MathJax version 2: https://cdn.jsdelivr.net/npm/mathjax@2
-# - in case of MathJax version 3: https://cdn.jsdelivr.net/npm/mathjax@3
-# This tag requires that the tag USE_MATHJAX is set to YES.
-
-MATHJAX_RELPATH        =
-
-# The MATHJAX_EXTENSIONS tag can be used to specify one or more MathJax
-# extension names that should be enabled during MathJax rendering. For example
-# for MathJax version 2 (see
-# https://docs.mathjax.org/en/v2.7-latest/tex.html#tex-and-latex-extensions):
-# MATHJAX_EXTENSIONS = TeX/AMSmath TeX/AMSsymbols
-# For example for MathJax version 3 (see
-# http://docs.mathjax.org/en/latest/input/tex/extensions/index.html):
-# MATHJAX_EXTENSIONS = ams
-# This tag requires that the tag USE_MATHJAX is set to YES.
-
-MATHJAX_EXTENSIONS     =
-
-# The MATHJAX_CODEFILE tag can be used to specify a file with javascript pieces
-# of code that will be used on startup of the MathJax code. See the MathJax site
-# (see:
-# http://docs.mathjax.org/en/v2.7-latest/output.html) for more details. For an
-# example see the documentation.
-# This tag requires that the tag USE_MATHJAX is set to YES.
-
-MATHJAX_CODEFILE       =
-
-# When the SEARCHENGINE tag is enabled doxygen will generate a search box for
-# the HTML output. The underlying search engine uses javascript and DHTML and
-# should work on any modern browser. Note that when using HTML help
-# (GENERATE_HTMLHELP), Qt help (GENERATE_QHP), or docsets (GENERATE_DOCSET)
-# there is already a search function so this one should typically be disabled.
-# For large projects the javascript based search engine can be slow, then
-# enabling SERVER_BASED_SEARCH may provide a better solution. It is possible to
-# search using the keyboard; to jump to the search box use <access key> + S
-# (what the <access key> is depends on the OS and browser, but it is typically
-# <CTRL>, <ALT>/<option>, or both). Inside the search box use the <cursor down
-# key> to jump into the search results window, the results can be navigated
-# using the <cursor keys>. Press <Enter> to select an item or <escape> to cancel
-# the search. The filter options can be selected when the cursor is inside the
-# search box by pressing <Shift>+<cursor down>. Also here use the <cursor keys>
-# to select a filter and <Enter> or <escape> to activate or cancel the filter
-# option.
-# The default value is: YES.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-SEARCHENGINE           = YES
-
-# When the SERVER_BASED_SEARCH tag is enabled the search engine will be
-# implemented using a web server instead of a web client using JavaScript. There
-# are two flavors of web server based searching depending on the EXTERNAL_SEARCH
-# setting. When disabled, doxygen will generate a PHP script for searching and
-# an index file used by the script. When EXTERNAL_SEARCH is enabled the indexing
-# and searching needs to be provided by external tools. See the section
-# "External Indexing and Searching" for details.
-# The default value is: NO.
-# This tag requires that the tag SEARCHENGINE is set to YES.
-
-SERVER_BASED_SEARCH    = NO
-
-# When EXTERNAL_SEARCH tag is enabled doxygen will no longer generate the PHP
-# script for searching. Instead the search results are written to an XML file
-# which needs to be processed by an external indexer. Doxygen will invoke an
-# external search engine pointed to by the SEARCHENGINE_URL option to obtain the
-# search results.
-#
-# Doxygen ships with an example indexer (doxyindexer) and search engine
-# (doxysearch.cgi) which are based on the open source search engine library
-# Xapian (see:
-# https://xapian.org/).
-#
-# See the section "External Indexing and Searching" for details.
-# The default value is: NO.
-# This tag requires that the tag SEARCHENGINE is set to YES.
-
-EXTERNAL_SEARCH        = NO
-
-# The SEARCHENGINE_URL should point to a search engine hosted by a web server
-# which will return the search results when EXTERNAL_SEARCH is enabled.
-#
-# Doxygen ships with an example indexer (doxyindexer) and search engine
-# (doxysearch.cgi) which are based on the open source search engine library
-# Xapian (see:
-# https://xapian.org/). See the section "External Indexing and Searching" for
-# details.
-# This tag requires that the tag SEARCHENGINE is set to YES.
-
-SEARCHENGINE_URL       =
-
-# When SERVER_BASED_SEARCH and EXTERNAL_SEARCH are both enabled the unindexed
-# search data is written to a file for indexing by an external tool. With the
-# SEARCHDATA_FILE tag the name of this file can be specified.
-# The default file is: searchdata.xml.
-# This tag requires that the tag SEARCHENGINE is set to YES.
-
-SEARCHDATA_FILE        = searchdata.xml
-
-# When SERVER_BASED_SEARCH and EXTERNAL_SEARCH are both enabled the
-# EXTERNAL_SEARCH_ID tag can be used as an identifier for the project. This is
-# useful in combination with EXTRA_SEARCH_MAPPINGS to search through multiple
-# projects and redirect the results back to the right project.
-# This tag requires that the tag SEARCHENGINE is set to YES.
-
-EXTERNAL_SEARCH_ID     =
-
-# The EXTRA_SEARCH_MAPPINGS tag can be used to enable searching through doxygen
-# projects other than the one defined by this configuration file, but that are
-# all added to the same external search index. Each project needs to have a
-# unique id set via EXTERNAL_SEARCH_ID. The search mapping then maps the id of
-# to a relative location where the documentation can be found. The format is:
-# EXTRA_SEARCH_MAPPINGS = tagname1=loc1 tagname2=loc2 ...
-# This tag requires that the tag SEARCHENGINE is set to YES.
-
-EXTRA_SEARCH_MAPPINGS  =
-
-#---------------------------------------------------------------------------
-# Configuration options related to the LaTeX output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_LATEX tag is set to YES, doxygen will generate LaTeX output.
-# The default value is: YES.
-
-GENERATE_LATEX         = NO
-
-# The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put. If a
-# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
-# it.
-# The default directory is: latex.
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-LATEX_OUTPUT           = latex
-
-# The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be
-# invoked.
-#
-# Note that when not enabling USE_PDFLATEX the default is latex when enabling
-# USE_PDFLATEX the default is pdflatex and when in the later case latex is
-# chosen this is overwritten by pdflatex. For specific output languages the
-# default can have been set differently, this depends on the implementation of
-# the output language.
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-LATEX_CMD_NAME         =
-
-# The MAKEINDEX_CMD_NAME tag can be used to specify the command name to generate
-# index for LaTeX.
-# Note: This tag is used in the Makefile / make.bat.
-# See also: LATEX_MAKEINDEX_CMD for the part in the generated output file
-# (.tex).
-# The default file is: makeindex.
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-MAKEINDEX_CMD_NAME     = makeindex
-
-# The LATEX_MAKEINDEX_CMD tag can be used to specify the command name to
-# generate index for LaTeX. In case there is no backslash (\) as first character
-# it will be automatically added in the LaTeX code.
-# Note: This tag is used in the generated output file (.tex).
-# See also: MAKEINDEX_CMD_NAME for the part in the Makefile / make.bat.
-# The default value is: makeindex.
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-LATEX_MAKEINDEX_CMD    = makeindex
-
-# If the COMPACT_LATEX tag is set to YES, doxygen generates more compact LaTeX
-# documents. This may be useful for small projects and may help to save some
-# trees in general.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-COMPACT_LATEX          = NO
-
-# The PAPER_TYPE tag can be used to set the paper type that is used by the
-# printer.
-# Possible values are: a4 (210 x 297 mm), letter (8.5 x 11 inches), legal (8.5 x
-# 14 inches) and executive (7.25 x 10.5 inches).
-# The default value is: a4.
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-PAPER_TYPE             = a4
-
-# The EXTRA_PACKAGES tag can be used to specify one or more LaTeX package names
-# that should be included in the LaTeX output. The package can be specified just
-# by its name or with the correct syntax as to be used with the LaTeX
-# \usepackage command. To get the times font for instance you can specify :
-# EXTRA_PACKAGES=times or EXTRA_PACKAGES={times}
-# To use the option intlimits with the amsmath package you can specify:
-# EXTRA_PACKAGES=[intlimits]{amsmath}
-# If left blank no extra packages will be included.
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-EXTRA_PACKAGES         = amsmath
-
-# The LATEX_HEADER tag can be used to specify a user-defined LaTeX header for
-# the generated LaTeX document. The header should contain everything until the
-# first chapter. If it is left blank doxygen will generate a standard header. It
-# is highly recommended to start with a default header using
-# doxygen -w latex new_header.tex new_footer.tex new_stylesheet.sty
-# and then modify the file new_header.tex. See also section "Doxygen usage" for
-# information on how to generate the default header that doxygen normally uses.
-#
-# Note: Only use a user-defined header if you know what you are doing!
-# Note: The header is subject to change so you typically have to regenerate the
-# default header when upgrading to a newer version of doxygen. The following
-# commands have a special meaning inside the header (and footer): For a
-# description of the possible markers and block names see the documentation.
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-LATEX_HEADER           =
-
-# The LATEX_FOOTER tag can be used to specify a user-defined LaTeX footer for
-# the generated LaTeX document. The footer should contain everything after the
-# last chapter. If it is left blank doxygen will generate a standard footer. See
-# LATEX_HEADER for more information on how to generate a default footer and what
-# special commands can be used inside the footer. See also section "Doxygen
-# usage" for information on how to generate the default footer that doxygen
-# normally uses. Note: Only use a user-defined footer if you know what you are
-# doing!
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-LATEX_FOOTER           =
-
-# The LATEX_EXTRA_STYLESHEET tag can be used to specify additional user-defined
-# LaTeX style sheets that are included after the standard style sheets created
-# by doxygen. Using this option one can overrule certain style aspects. Doxygen
-# will copy the style sheet files to the output directory.
-# Note: The order of the extra style sheet files is of importance (e.g. the last
-# style sheet in the list overrules the setting of the previous ones in the
-# list).
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-LATEX_EXTRA_STYLESHEET =
-
-# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images or
-# other source files which should be copied to the LATEX_OUTPUT output
-# directory. Note that the files will be copied as-is; there are no commands or
-# markers available.
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-LATEX_EXTRA_FILES      =
-
-# If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated is
-# prepared for conversion to PDF (using ps2pdf or pdflatex). The PDF file will
-# contain links (just like the HTML output) instead of page references. This
-# makes the output suitable for online browsing using a PDF viewer.
-# The default value is: YES.
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-PDF_HYPERLINKS         = YES
-
-# If the USE_PDFLATEX tag is set to YES, doxygen will use the engine as
-# specified with LATEX_CMD_NAME to generate the PDF file directly from the LaTeX
-# files. Set this option to YES, to get a higher quality PDF documentation.
-#
-# See also section LATEX_CMD_NAME for selecting the engine.
-# The default value is: YES.
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-USE_PDFLATEX           = YES
-
-# The LATEX_BATCHMODE tag signals the behavior of LaTeX in case of an error.
-# Possible values are: NO same as ERROR_STOP, YES same as BATCH, BATCH In batch
-# mode nothing is printed on the terminal, errors are scrolled as if <return> is
-# hit at every error; missing files that TeX tries to input or request from
-# keyboard input (\read on a not open input stream) cause the job to abort,
-# NON_STOP In nonstop mode the diagnostic message will appear on the terminal,
-# but there is no possibility of user interaction just like in batch mode,
-# SCROLL In scroll mode, TeX will stop only for missing files to input or if
-# keyboard input is necessary and ERROR_STOP In errorstop mode, TeX will stop at
-# each error, asking for user intervention.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-LATEX_BATCHMODE        = NO
-
-# If the LATEX_HIDE_INDICES tag is set to YES then doxygen will not include the
-# index chapters (such as File Index, Compound Index, etc.) in the output.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-LATEX_HIDE_INDICES     = NO
-
-# The LATEX_BIB_STYLE tag can be used to specify the style to use for the
-# bibliography, e.g. plainnat, or ieeetr. See
-# https://en.wikipedia.org/wiki/BibTeX and \cite for more info.
-# The default value is: plain.
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-LATEX_BIB_STYLE        = plain
-
-# The LATEX_EMOJI_DIRECTORY tag is used to specify the (relative or absolute)
-# path from which the emoji images will be read. If a relative path is entered,
-# it will be relative to the LATEX_OUTPUT directory. If left blank the
-# LATEX_OUTPUT directory will be used.
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-LATEX_EMOJI_DIRECTORY  =
-
-#---------------------------------------------------------------------------
-# Configuration options related to the RTF output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_RTF tag is set to YES, doxygen will generate RTF output. The
-# RTF output is optimized for Word 97 and may not look too pretty with other RTF
-# readers/editors.
-# The default value is: NO.
-
-GENERATE_RTF           = NO
-
-# The RTF_OUTPUT tag is used to specify where the RTF docs will be put. If a
-# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
-# it.
-# The default directory is: rtf.
-# This tag requires that the tag GENERATE_RTF is set to YES.
-
-RTF_OUTPUT             = rtf
-
-# If the COMPACT_RTF tag is set to YES, doxygen generates more compact RTF
-# documents. This may be useful for small projects and may help to save some
-# trees in general.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_RTF is set to YES.
-
-COMPACT_RTF            = NO
-
-# If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated will
-# contain hyperlink fields. The RTF file will contain links (just like the HTML
-# output) instead of page references. This makes the output suitable for online
-# browsing using Word or some other Word compatible readers that support those
-# fields.
-#
-# Note: WordPad (write) and others do not support links.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_RTF is set to YES.
-
-RTF_HYPERLINKS         = NO
-
-# Load stylesheet definitions from file. Syntax is similar to doxygen's
-# configuration file, i.e. a series of assignments. You only have to provide
-# replacements, missing definitions are set to their default value.
-#
-# See also section "Doxygen usage" for information on how to generate the
-# default style sheet that doxygen normally uses.
-# This tag requires that the tag GENERATE_RTF is set to YES.
-
-RTF_STYLESHEET_FILE    =
-
-# Set optional variables used in the generation of an RTF document. Syntax is
-# similar to doxygen's configuration file. A template extensions file can be
-# generated using doxygen -e rtf extensionFile.
-# This tag requires that the tag GENERATE_RTF is set to YES.
-
-RTF_EXTENSIONS_FILE    =
-
-#---------------------------------------------------------------------------
-# Configuration options related to the man page output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_MAN tag is set to YES, doxygen will generate man pages for
-# classes and files.
-# The default value is: NO.
-
-GENERATE_MAN           = NO
-
-# The MAN_OUTPUT tag is used to specify where the man pages will be put. If a
-# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
-# it. A directory man3 will be created inside the directory specified by
-# MAN_OUTPUT.
-# The default directory is: man.
-# This tag requires that the tag GENERATE_MAN is set to YES.
-
-MAN_OUTPUT             = man
-
-# The MAN_EXTENSION tag determines the extension that is added to the generated
-# man pages. In case the manual section does not start with a number, the number
-# 3 is prepended. The dot (.) at the beginning of the MAN_EXTENSION tag is
-# optional.
-# The default value is: .3.
-# This tag requires that the tag GENERATE_MAN is set to YES.
-
-MAN_EXTENSION          = .3
-
-# The MAN_SUBDIR tag determines the name of the directory created within
-# MAN_OUTPUT in which the man pages are placed. If defaults to man followed by
-# MAN_EXTENSION with the initial . removed.
-# This tag requires that the tag GENERATE_MAN is set to YES.
-
-MAN_SUBDIR             =
-
-# If the MAN_LINKS tag is set to YES and doxygen generates man output, then it
-# will generate one additional man file for each entity documented in the real
-# man page(s). These additional files only source the real man page, but without
-# them the man command would be unable to find the correct page.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_MAN is set to YES.
-
-MAN_LINKS              = NO
-
-#---------------------------------------------------------------------------
-# Configuration options related to the XML output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_XML tag is set to YES, doxygen will generate an XML file that
-# captures the structure of the code including all documentation.
-# The default value is: NO.
-
-GENERATE_XML           = NO
-
-# The XML_OUTPUT tag is used to specify where the XML pages will be put. If a
-# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
-# it.
-# The default directory is: xml.
-# This tag requires that the tag GENERATE_XML is set to YES.
-
-XML_OUTPUT             = xml
-
-# If the XML_PROGRAMLISTING tag is set to YES, doxygen will dump the program
-# listings (including syntax highlighting and cross-referencing information) to
-# the XML output. Note that enabling this will significantly increase the size
-# of the XML output.
-# The default value is: YES.
-# This tag requires that the tag GENERATE_XML is set to YES.
-
-XML_PROGRAMLISTING     = YES
-
-# If the XML_NS_MEMB_FILE_SCOPE tag is set to YES, doxygen will include
-# namespace members in file scope as well, matching the HTML output.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_XML is set to YES.
-
-XML_NS_MEMB_FILE_SCOPE = NO
-
-#---------------------------------------------------------------------------
-# Configuration options related to the DOCBOOK output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_DOCBOOK tag is set to YES, doxygen will generate Docbook files
-# that can be used to generate PDF.
-# The default value is: NO.
-
-GENERATE_DOCBOOK       = NO
-
-# The DOCBOOK_OUTPUT tag is used to specify where the Docbook pages will be put.
-# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
-# front of it.
-# The default directory is: docbook.
-# This tag requires that the tag GENERATE_DOCBOOK is set to YES.
-
-DOCBOOK_OUTPUT         = docbook
-
-#---------------------------------------------------------------------------
-# Configuration options for the AutoGen Definitions output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_AUTOGEN_DEF tag is set to YES, doxygen will generate an
-# AutoGen Definitions (see https://autogen.sourceforge.net/) file that captures
-# the structure of the code including all documentation. Note that this feature
-# is still experimental and incomplete at the moment.
-# The default value is: NO.
-
-GENERATE_AUTOGEN_DEF   = NO
-
-#---------------------------------------------------------------------------
-# Configuration options related to Sqlite3 output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_SQLITE3 tag is set to YES doxygen will generate a Sqlite3
-# database with symbols found by doxygen stored in tables.
-# The default value is: NO.
-
-GENERATE_SQLITE3       = NO
-
-# The SQLITE3_OUTPUT tag is used to specify where the Sqlite3 database will be
-# put. If a relative path is entered the value of OUTPUT_DIRECTORY will be put
-# in front of it.
-# The default directory is: sqlite3.
-# This tag requires that the tag GENERATE_SQLITE3 is set to YES.
-
-SQLITE3_OUTPUT         = sqlite3
-
-# The SQLITE3_OVERWRITE_DB tag is set to YES, the existing doxygen_sqlite3.db
-# database file will be recreated with each doxygen run. If set to NO, doxygen
-# will warn if an a database file is already found and not modify it.
-# The default value is: YES.
-# This tag requires that the tag GENERATE_SQLITE3 is set to YES.
-
-SQLITE3_RECREATE_DB    = YES
-
-#---------------------------------------------------------------------------
-# Configuration options related to the Perl module output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_PERLMOD tag is set to YES, doxygen will generate a Perl module
-# file that captures the structure of the code including all documentation.
-#
-# Note that this feature is still experimental and incomplete at the moment.
-# The default value is: NO.
-
-GENERATE_PERLMOD       = NO
-
-# If the PERLMOD_LATEX tag is set to YES, doxygen will generate the necessary
-# Makefile rules, Perl scripts and LaTeX code to be able to generate PDF and DVI
-# output from the Perl module output.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_PERLMOD is set to YES.
-
-PERLMOD_LATEX          = NO
-
-# If the PERLMOD_PRETTY tag is set to YES, the Perl module output will be nicely
-# formatted so it can be parsed by a human reader. This is useful if you want to
-# understand what is going on. On the other hand, if this tag is set to NO, the
-# size of the Perl module output will be much smaller and Perl will parse it
-# just the same.
-# The default value is: YES.
-# This tag requires that the tag GENERATE_PERLMOD is set to YES.
-
-PERLMOD_PRETTY         = YES
-
-# The names of the make variables in the generated doxyrules.make file are
-# prefixed with the string contained in PERLMOD_MAKEVAR_PREFIX. This is useful
-# so different doxyrules.make files included by the same Makefile don't
-# overwrite each other's variables.
-# This tag requires that the tag GENERATE_PERLMOD is set to YES.
-
-PERLMOD_MAKEVAR_PREFIX =
-
-#---------------------------------------------------------------------------
-# Configuration options related to the preprocessor
-#---------------------------------------------------------------------------
-
-# If the ENABLE_PREPROCESSING tag is set to YES, doxygen will evaluate all
-# C-preprocessor directives found in the sources and include files.
-# The default value is: YES.
-
-ENABLE_PREPROCESSING   = YES
-
-# If the MACRO_EXPANSION tag is set to YES, doxygen will expand all macro names
-# in the source code. If set to NO, only conditional compilation will be
-# performed. Macro expansion can be done in a controlled way by setting
-# EXPAND_ONLY_PREDEF to YES.
-# The default value is: NO.
-# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
-
-MACRO_EXPANSION        = NO
-
-# If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES then
-# the macro expansion is limited to the macros specified with the PREDEFINED and
-# EXPAND_AS_DEFINED tags.
-# The default value is: NO.
-# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
-
-EXPAND_ONLY_PREDEF     = NO
-
-# If the SEARCH_INCLUDES tag is set to YES, the include files in the
-# INCLUDE_PATH will be searched if a #include is found.
-# The default value is: YES.
-# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
-
-SEARCH_INCLUDES        = YES
-
-# The INCLUDE_PATH tag can be used to specify one or more directories that
-# contain include files that are not input files but should be processed by the
-# preprocessor. Note that the INCLUDE_PATH is not recursive, so the setting of
-# RECURSIVE has no effect here.
-# This tag requires that the tag SEARCH_INCLUDES is set to YES.
-
-INCLUDE_PATH           =
-
-# You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard
-# patterns (like *.h and *.hpp) to filter out the header-files in the
-# directories. If left blank, the patterns specified with FILE_PATTERNS will be
-# used.
-# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
-
-INCLUDE_FILE_PATTERNS  =
-
-# The PREDEFINED tag can be used to specify one or more macro names that are
-# defined before the preprocessor is started (similar to the -D option of e.g.
-# gcc). The argument of the tag is a list of macros of the form: name or
-# name=definition (no spaces). If the definition and the "=" are omitted, "=1"
-# is assumed. To prevent a macro definition from being undefined via #undef or
-# recursively expanded use the := operator instead of the = operator.
-# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
-
-PREDEFINED             =
-
-# If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then this
-# tag can be used to specify a list of macro names that should be expanded. The
-# macro definition that is found in the sources will be used. Use the PREDEFINED
-# tag if you want to use a different macro definition that overrules the
-# definition found in the source code.
-# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
-
-EXPAND_AS_DEFINED      =
-
-# If the SKIP_FUNCTION_MACROS tag is set to YES then doxygen's preprocessor will
-# remove all references to function-like macros that are alone on a line, have
-# an all uppercase name, and do not end with a semicolon. Such function macros
-# are typically used for boiler-plate code, and will confuse the parser if not
-# removed.
-# The default value is: YES.
-# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
-
-SKIP_FUNCTION_MACROS   = YES
-
-#---------------------------------------------------------------------------
-# Configuration options related to external references
-#---------------------------------------------------------------------------
-
-# The TAGFILES tag can be used to specify one or more tag files. For each tag
-# file the location of the external documentation should be added. The format of
-# a tag file without this location is as follows:
-# TAGFILES = file1 file2 ...
-# Adding location for the tag files is done as follows:
-# TAGFILES = file1=loc1 "file2 = loc2" ...
-# where loc1 and loc2 can be relative or absolute paths or URLs. See the
-# section "Linking to external documentation" for more information about the use
-# of tag files.
-# Note: Each tag file must have a unique name (where the name does NOT include
-# the path). If a tag file is not located in the directory in which doxygen is
-# run, you must also specify the path to the tagfile here.
-
-TAGFILES               =
-
-# When a file name is specified after GENERATE_TAGFILE, doxygen will create a
-# tag file that is based on the input files it reads. See section "Linking to
-# external documentation" for more information about the usage of tag files.
-
-GENERATE_TAGFILE       =
-
-# If the ALLEXTERNALS tag is set to YES, all external classes and namespaces
-# will be listed in the class and namespace index. If set to NO, only the
-# inherited external classes will be listed.
-# The default value is: NO.
-
-ALLEXTERNALS           = NO
-
-# If the EXTERNAL_GROUPS tag is set to YES, all external groups will be listed
-# in the topic index. If set to NO, only the current project's groups will be
-# listed.
-# The default value is: YES.
-
-EXTERNAL_GROUPS        = YES
-
-# If the EXTERNAL_PAGES tag is set to YES, all external pages will be listed in
-# the related pages index. If set to NO, only the current project's pages will
-# be listed.
-# The default value is: YES.
-
-EXTERNAL_PAGES         = YES
-
-#---------------------------------------------------------------------------
-# Configuration options related to diagram generator tools
-#---------------------------------------------------------------------------
-
-# If set to YES the inheritance and collaboration graphs will hide inheritance
-# and usage relations if the target is undocumented or is not a class.
-# The default value is: YES.
-
-HIDE_UNDOC_RELATIONS   = NO
-
-# If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is
-# available from the path. This tool is part of Graphviz (see:
-# https://www.graphviz.org/), a graph visualization toolkit from AT&T and Lucent
-# Bell Labs. The other options in this section have no effect if this option is
-# set to NO
-# The default value is: NO.
-
-HAVE_DOT               = YES
-
-# The DOT_NUM_THREADS specifies the number of dot invocations doxygen is allowed
-# to run in parallel. When set to 0 doxygen will base this on the number of
-# processors available in the system. You can set it explicitly to a value
-# larger than 0 to get control over the balance between CPU load and processing
-# speed.
-# Minimum value: 0, maximum value: 32, default value: 0.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-DOT_NUM_THREADS        = 0
-
-# DOT_COMMON_ATTR is common attributes for nodes, edges and labels of
-# subgraphs. When you want a differently looking font in the dot files that
-# doxygen generates you can specify fontname, fontcolor and fontsize attributes.
-# For details please see <a href=https://graphviz.org/doc/info/attrs.html>Node,
-# Edge and Graph Attributes specification</a> You need to make sure dot is able
-# to find the font, which can be done by putting it in a standard location or by
-# setting the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
-# directory containing the font. Default graphviz fontsize is 14.
-# The default value is: fontname=Helvetica,fontsize=10.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-DOT_COMMON_ATTR        = "fontname=Helvetica,fontsize=10"
-
-# DOT_EDGE_ATTR is concatenated with DOT_COMMON_ATTR. For elegant style you can
-# add 'arrowhead=open, arrowtail=open, arrowsize=0.5'. <a
-# href=https://graphviz.org/doc/info/arrows.html>Complete documentation about
-# arrows shapes.</a>
-# The default value is: labelfontname=Helvetica,labelfontsize=10.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-DOT_EDGE_ATTR          = "labelfontname=Helvetica,labelfontsize=10"
-
-# DOT_NODE_ATTR is concatenated with DOT_COMMON_ATTR. For view without boxes
-# around nodes set 'shape=plain' or 'shape=plaintext' <a
-# href=https://www.graphviz.org/doc/info/shapes.html>Shapes specification</a>
-# The default value is: shape=box,height=0.2,width=0.4.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-DOT_NODE_ATTR          = "shape=box,height=0.2,width=0.4"
-
-# You can set the path where dot can find font specified with fontname in
-# DOT_COMMON_ATTR and others dot attributes.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-DOT_FONTPATH           =
-
-# If the CLASS_GRAPH tag is set to YES or GRAPH or BUILTIN then doxygen will
-# generate a graph for each documented class showing the direct and indirect
-# inheritance relations. In case the CLASS_GRAPH tag is set to YES or GRAPH and
-# HAVE_DOT is enabled as well, then dot will be used to draw the graph. In case
-# the CLASS_GRAPH tag is set to YES and HAVE_DOT is disabled or if the
-# CLASS_GRAPH tag is set to BUILTIN, then the built-in generator will be used.
-# If the CLASS_GRAPH tag is set to TEXT the direct and indirect inheritance
-# relations will be shown as texts / links.
-# Possible values are: NO, YES, TEXT, GRAPH and BUILTIN.
-# The default value is: YES.
-
-CLASS_GRAPH            = YES
-
-# If the COLLABORATION_GRAPH tag is set to YES then doxygen will generate a
-# graph for each documented class showing the direct and indirect implementation
-# dependencies (inheritance, containment, and class references variables) of the
-# class with other documented classes. Explicit enabling a collaboration graph,
-# when COLLABORATION_GRAPH is set to NO, can be accomplished by means of the
-# command \collaborationgraph. Disabling a collaboration graph can be
-# accomplished by means of the command \hidecollaborationgraph.
-# The default value is: YES.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-COLLABORATION_GRAPH    = YES
-
-# If the GROUP_GRAPHS tag is set to YES then doxygen will generate a graph for
-# groups, showing the direct groups dependencies. Explicit enabling a group
-# dependency graph, when GROUP_GRAPHS is set to NO, can be accomplished by means
-# of the command \groupgraph. Disabling a directory graph can be accomplished by
-# means of the command \hidegroupgraph. See also the chapter Grouping in the
-# manual.
-# The default value is: YES.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-GROUP_GRAPHS           = YES
-
-# If the UML_LOOK tag is set to YES, doxygen will generate inheritance and
-# collaboration diagrams in a style similar to the OMG's Unified Modeling
-# Language.
-# The default value is: NO.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-UML_LOOK               = YES
-
-# If the UML_LOOK tag is enabled, the fields and methods are shown inside the
-# class node. If there are many fields or methods and many nodes the graph may
-# become too big to be useful. The UML_LIMIT_NUM_FIELDS threshold limits the
-# number of items for each type to make the size more manageable. Set this to 0
-# for no limit. Note that the threshold may be exceeded by 50% before the limit
-# is enforced. So when you set the threshold to 10, up to 15 fields may appear,
-# but if the number exceeds 15, the total amount of fields shown is limited to
-# 10.
-# Minimum value: 0, maximum value: 100, default value: 10.
-# This tag requires that the tag UML_LOOK is set to YES.
-
-UML_LIMIT_NUM_FIELDS   = 10
-
-# If the DOT_UML_DETAILS tag is set to NO, doxygen will show attributes and
-# methods without types and arguments in the UML graphs. If the DOT_UML_DETAILS
-# tag is set to YES, doxygen will add type and arguments for attributes and
-# methods in the UML graphs. If the DOT_UML_DETAILS tag is set to NONE, doxygen
-# will not generate fields with class member information in the UML graphs. The
-# class diagrams will look similar to the default class diagrams but using UML
-# notation for the relationships.
-# Possible values are: NO, YES and NONE.
-# The default value is: NO.
-# This tag requires that the tag UML_LOOK is set to YES.
-
-DOT_UML_DETAILS        = NO
-
-# The DOT_WRAP_THRESHOLD tag can be used to set the maximum number of characters
-# to display on a single line. If the actual line length exceeds this threshold
-# significantly it will wrapped across multiple lines. Some heuristics are apply
-# to avoid ugly line breaks.
-# Minimum value: 0, maximum value: 1000, default value: 17.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-DOT_WRAP_THRESHOLD     = 17
-
-# If the TEMPLATE_RELATIONS tag is set to YES then the inheritance and
-# collaboration graphs will show the relations between templates and their
-# instances.
-# The default value is: NO.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-TEMPLATE_RELATIONS     = NO
-
-# If the INCLUDE_GRAPH, ENABLE_PREPROCESSING and SEARCH_INCLUDES tags are set to
-# YES then doxygen will generate a graph for each documented file showing the
-# direct and indirect include dependencies of the file with other documented
-# files. Explicit enabling an include graph, when INCLUDE_GRAPH is is set to NO,
-# can be accomplished by means of the command \includegraph. Disabling an
-# include graph can be accomplished by means of the command \hideincludegraph.
-# The default value is: YES.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-INCLUDE_GRAPH          = YES
-
-# If the INCLUDED_BY_GRAPH, ENABLE_PREPROCESSING and SEARCH_INCLUDES tags are
-# set to YES then doxygen will generate a graph for each documented file showing
-# the direct and indirect include dependencies of the file with other documented
-# files. Explicit enabling an included by graph, when INCLUDED_BY_GRAPH is set
-# to NO, can be accomplished by means of the command \includedbygraph. Disabling
-# an included by graph can be accomplished by means of the command
-# \hideincludedbygraph.
-# The default value is: YES.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-INCLUDED_BY_GRAPH      = YES
-
-# If the CALL_GRAPH tag is set to YES then doxygen will generate a call
-# dependency graph for every global function or class method.
-#
-# Note that enabling this option will significantly increase the time of a run.
-# So in most cases it will be better to enable call graphs for selected
-# functions only using the \callgraph command. Disabling a call graph can be
-# accomplished by means of the command \hidecallgraph.
-# The default value is: NO.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-CALL_GRAPH             = NO
-
-# If the CALLER_GRAPH tag is set to YES then doxygen will generate a caller
-# dependency graph for every global function or class method.
-#
-# Note that enabling this option will significantly increase the time of a run.
-# So in most cases it will be better to enable caller graphs for selected
-# functions only using the \callergraph command. Disabling a caller graph can be
-# accomplished by means of the command \hidecallergraph.
-# The default value is: NO.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-CALLER_GRAPH           = NO
-
-# If the GRAPHICAL_HIERARCHY tag is set to YES then doxygen will graphical
-# hierarchy of all classes instead of a textual one.
-# The default value is: YES.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-GRAPHICAL_HIERARCHY    = YES
-
-# If the DIRECTORY_GRAPH tag is set to YES then doxygen will show the
-# dependencies a directory has on other directories in a graphical way. The
-# dependency relations are determined by the #include relations between the
-# files in the directories. Explicit enabling a directory graph, when
-# DIRECTORY_GRAPH is set to NO, can be accomplished by means of the command
-# \directorygraph. Disabling a directory graph can be accomplished by means of
-# the command \hidedirectorygraph.
-# The default value is: YES.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-DIRECTORY_GRAPH        = YES
-
-# The DIR_GRAPH_MAX_DEPTH tag can be used to limit the maximum number of levels
-# of child directories generated in directory dependency graphs by dot.
-# Minimum value: 1, maximum value: 25, default value: 1.
-# This tag requires that the tag DIRECTORY_GRAPH is set to YES.
-
-DIR_GRAPH_MAX_DEPTH    = 1
-
-# The DOT_IMAGE_FORMAT tag can be used to set the image format of the images
-# generated by dot. For an explanation of the image formats see the section
-# output formats in the documentation of the dot tool (Graphviz (see:
-# https://www.graphviz.org/)).
-# Note: If you choose svg you need to set HTML_FILE_EXTENSION to xhtml in order
-# to make the SVG files visible in IE 9+ (other browsers do not have this
-# requirement).
-# Possible values are: png, jpg, gif, svg, png:gd, png:gd:gd, png:cairo,
-# png:cairo:gd, png:cairo:cairo, png:cairo:gdiplus, png:gdiplus and
-# png:gdiplus:gdiplus.
-# The default value is: png.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-DOT_IMAGE_FORMAT       = png
-
-# If DOT_IMAGE_FORMAT is set to svg, then this option can be set to YES to
-# enable generation of interactive SVG images that allow zooming and panning.
-#
-# Note that this requires a modern browser other than Internet Explorer. Tested
-# and working are Firefox, Chrome, Safari, and Opera.
-# Note: For IE 9+ you need to set HTML_FILE_EXTENSION to xhtml in order to make
-# the SVG files visible. Older versions of IE do not have SVG support.
-# The default value is: NO.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-INTERACTIVE_SVG        = NO
-
-# The DOT_PATH tag can be used to specify the path where the dot tool can be
-# found. If left blank, it is assumed the dot tool can be found in the path.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-DOT_PATH               =
-
-# The DOTFILE_DIRS tag can be used to specify one or more directories that
-# contain dot files that are included in the documentation (see the \dotfile
-# command).
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-DOTFILE_DIRS           =
-
-# You can include diagrams made with dia in doxygen documentation. Doxygen will
-# then run dia to produce the diagram and insert it in the documentation. The
-# DIA_PATH tag allows you to specify the directory where the dia binary resides.
-# If left empty dia is assumed to be found in the default search path.
-
-DIA_PATH               =
-
-# The DIAFILE_DIRS tag can be used to specify one or more directories that
-# contain dia files that are included in the documentation (see the \diafile
-# command).
-
-DIAFILE_DIRS           =
-
-# When using plantuml, the PLANTUML_JAR_PATH tag should be used to specify the
-# path where java can find the plantuml.jar file or to the filename of jar file
-# to be used. If left blank, it is assumed PlantUML is not used or called during
-# a preprocessing step. Doxygen will generate a warning when it encounters a
-# \startuml command in this case and will not generate output for the diagram.
-
-PLANTUML_JAR_PATH      =
-
-# When using plantuml, the PLANTUML_CFG_FILE tag can be used to specify a
-# configuration file for plantuml.
-
-PLANTUML_CFG_FILE      =
-
-# When using plantuml, the specified paths are searched for files specified by
-# the !include statement in a plantuml block.
-
-PLANTUML_INCLUDE_PATH  =
-
-# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of nodes
-# that will be shown in the graph. If the number of nodes in a graph becomes
-# larger than this value, doxygen will truncate the graph, which is visualized
-# by representing a node as a red box. Note that doxygen if the number of direct
-# children of the root node in a graph is already larger than
-# DOT_GRAPH_MAX_NODES then the graph will not be shown at all. Also note that
-# the size of a graph can be further restricted by MAX_DOT_GRAPH_DEPTH.
-# Minimum value: 0, maximum value: 10000, default value: 50.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-DOT_GRAPH_MAX_NODES    = 500
-
-# The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the graphs
-# generated by dot. A depth value of 3 means that only nodes reachable from the
-# root by following a path via at most 3 edges will be shown. Nodes that lay
-# further from the root node will be omitted. Note that setting this option to 1
-# or 2 may greatly reduce the computation time needed for large code bases. Also
-# note that the size of a graph can be further restricted by
-# DOT_GRAPH_MAX_NODES. Using a depth of 0 means no depth restriction.
-# Minimum value: 0, maximum value: 1000, default value: 0.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-MAX_DOT_GRAPH_DEPTH    = 0
-
-# Set the DOT_MULTI_TARGETS tag to YES to allow dot to generate multiple output
-# files in one run (i.e. multiple -o and -T options on the command line). This
-# makes dot run faster, but since only newer versions of dot (>1.8.10) support
-# this, this feature is disabled by default.
-# The default value is: NO.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-DOT_MULTI_TARGETS      = NO
-
-# If the GENERATE_LEGEND tag is set to YES doxygen will generate a legend page
-# explaining the meaning of the various boxes and arrows in the dot generated
-# graphs.
-# Note: This tag requires that UML_LOOK isn't set, i.e. the doxygen internal
-# graphical representation for inheritance and collaboration diagrams is used.
-# The default value is: YES.
-# This tag requires that the tag HAVE_DOT is set to YES.
-
-GENERATE_LEGEND        = YES
-
-# If the DOT_CLEANUP tag is set to YES, doxygen will remove the intermediate
-# files that are used to generate the various graphs.
-#
-# Note: This setting is not only used for dot files but also for msc temporary
-# files.
-# The default value is: YES.
-
-DOT_CLEANUP            = YES
-
-# You can define message sequence charts within doxygen comments using the \msc
-# command. If the MSCGEN_TOOL tag is left empty (the default), then doxygen will
-# use a built-in version of mscgen tool to produce the charts. Alternatively,
-# the MSCGEN_TOOL tag can also specify the name an external tool. For instance,
-# specifying prog as the value, doxygen will call the tool as prog -T
-# <outfile_format> -o <outputfile> <inputfile>. The external tool should support
-# output file formats "png", "eps", "svg", and "ismap".
-
-MSCGEN_TOOL            =
-
-# The MSCFILE_DIRS tag can be used to specify one or more directories that
-# contain msc files that are included in the documentation (see the \mscfile
-# command).
-
-MSCFILE_DIRS           =
-
-# Enable BibTeX for citations
-GENERATE_BIBTEX = YES
-USE_BIBTEX = YES
-BIBFILE = @BIBTEX_FILE@
-
-# Other settings
-
-EXTERNAL_LINKS = YES
\ No newline at end of file
diff --git a/mkdocs.yml b/mkdocs.yml
index 9365d77..8c73871 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -73,18 +73,18 @@ plugins:
   - mkdoxy:
       projects:
         propulsion_design:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "propulsion_design"
-            OUTPUT_DIR: "docs/api/propulsion"
-            BIBTEX_FILE: "docs/assets/bibtex/propulsion_design_literature.bib"
-          src-dirs: ../aircraft-design/propulsion_design/src/
+          src-dirs: ../aircraft-design/propulsion_design/src
           full-doc: True
+          output: docs/propulsion_design
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            EXTRACT_ALL: YES
+            BIBTEX_FILE: "docs/assets/bibtex/propulsion_design_literature.bib"
         ecological_assessment:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "ecological_assessment"
-            OUTPUT_DIR: "docs/api/ecological_assessment"
+            OUTPUT_DIR: "api/ecological_assessment"
             BIBTEX_FILE: "docs/assets/bibtex/ecological_assessment_literature.bib"
           src-dirs: ../aircraft-design/ecological_assessment/src/
           full-doc: True
@@ -92,7 +92,7 @@ plugins:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "initial_sizing"
-            OUTPUT_DIR: "docs/api/initial_sizing"
+            OUTPUT_DIR: "api/initial_sizing"
             BIBTEX_FILE: "docs/assets/bibtex/initial_sizing_literature.bib"
           src-dirs: ../aircraft-design/initial_sizing/src/
           full-doc: true
@@ -100,7 +100,7 @@ plugins:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "create_mission_xml"
-            OUTPUT_DIR: "docs/api/create_mission_xml"
+            OUTPUT_DIR: "api/create_mission_xml"
             BIBTEX_FILE: "docs/assets/bibtex/create_mission_xml_literature.bib"
           src-dirs: ../aircraft-design/create_mission_xml/src/
           full-doc: true
@@ -108,7 +108,7 @@ plugins:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "fuselage_design"
-            OUTPUT_DIR: "docs/api/fuselage_design"
+            OUTPUT_DIR: "api/fuselage_design"
             BIBTEX_FILE: "docs/assets/bibtex/fuselage_design_literature.bib"
           src-dirs: ../aircraft-design/fuselage_design/src/
           full-doc: true
@@ -116,7 +116,7 @@ plugins:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "wing_design"
-            OUTPUT_DIR: "docs/api/wing_design"
+            OUTPUT_DIR: "api/wing_design"
             BIBTEX_FILE: "docs/assets/bibtex/wing_design_literature.bib"
           src-dirs: ../aircraft-design/wing_design/src/
           full-doc: True
@@ -124,77 +124,77 @@ plugins:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "empennage_design"
-            OUTPUT_DIR: "docs/api/empennage_design"
+            OUTPUT_DIR: "api/empennage_design"
           src-dirs: ../aircraft-design/empennage_design/src/
           full-doc: true
         tank_design:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "tank_design"
-            OUTPUT_DIR: "docs/api/tank_design"
+            OUTPUT_DIR: "api/tank_design"
           src-dirs: ../aircraft-design/tank_design/src/
           full-doc: true
         landing_gear_design:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "landing_gear_design"
-            OUTPUT_DIR: "docs/api/landing_gear_design"
+            OUTPUT_DIR: "api/landing_gear_design"
           src-dirs: ../aircraft-design/landing_gear_design/src/
           full-doc: true
         systems_design:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "systems_design"
-            OUTPUT_DIR: "docs/api/systems_design"
+            OUTPUT_DIR: "api/systems_design"
           src-dirs: ../aircraft-design/systems_design/src/
           full-doc: true
         aerodynamic_analysis:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "aerodynamic_analysis"
-            OUTPUT_DIR: "docs/api/aerodynamic_analysis"
+            OUTPUT_DIR: "api/aerodynamic_analysis"
           src-dirs: ../aircraft-design/aerodynamic_analysis/src/
           full-doc: true
         aircraftGeometry2:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "aircraftGeometry2"
-            OUTPUT_DIR: "docs/api/aircraftGeometry2"
+            OUTPUT_DIR: "api/aircraftGeometry2"
           src-dirs: ../aircraft-design/libs/aircraftGeometry2/src/
           full-doc: true
         engine:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "engine"
-            OUTPUT_DIR: "docs/api/engine"
+            OUTPUT_DIR: "api/engine"
           src-dirs: ../aircraft-design/libs/engine/src/
           full-doc: true
         mission_analysis:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "mission_analysis"
-            OUTPUT_DIR: "docs/api/mission_analysis"
+            OUTPUT_DIR: "api/mission_analysis"
           src-dirs: ../aircraft-design/mission_analysis/src/
           full-doc: true
         weight_and_balance_analysis:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "weight_and_balance_analysis"
-            OUTPUT_DIR: "docs/api/weight_and_balance_analysis"
+            OUTPUT_DIR: "api/weight_and_balance_analysis"
           src-dirs: ../aircraft-design/weight_and_balance_analysis/src/
           full-doc: true
         performance_assesment:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "performance_assesment"
-            OUTPUT_DIR: "docs/api/performance_assesment"
+            OUTPUT_DIR: "api/performance_assesment"
           src-dirs: ../aircraft-design/performance_assesment/src/
           full-doc: true
         cost_estimation:
           doxyfile: Doxyfile
           variables:
             PROJECT_NAME: "cost_estimation"
-            OUTPUT_DIR: "docs/api/cost_estimation"
+            OUTPUT_DIR: "api/cost_estimation"
           src-dirs: ../aircraft-design/cost_estimation/src/
           full-doc: true
   - glightbox                             # Plugin for lightbox-style image and content viewing.
-- 
GitLab


From e7cbe42d1f9066058ec36085d97a2894c40a1247 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Thu, 27 Feb 2025 11:36:40 +0100
Subject: [PATCH 03/33] API fix

---
 .gitlab-ci.yml |   1 +
 mkdocs.yml     | 123 +++----------------------------------------------
 2 files changed, 7 insertions(+), 117 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index c3f1908..7c84958 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -70,6 +70,7 @@ pages:
   script:
     # Build the MkDocs documentation site
     - cp -r $CI_PROJECT_DIR/aircraft-design/propulsion_design/src $CI_PROJECT_DIR/docs/documentation/propulsion_design 
+    - ls -la $CI_PROJECT_DIR/docs/documentation/propulsion_design
     - pipenv run mkdocs build --verbose --site-dir $CI_PROJECT_DIR/public
   needs:
     - clone  # This job depends on the successful completion of the clone job
diff --git a/mkdocs.yml b/mkdocs.yml
index 8c73871..d54a8d2 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -73,130 +73,19 @@ plugins:
   - mkdoxy:
       projects:
         propulsion_design:
-          src-dirs: ../aircraft-design/propulsion_design/src
+          src-dirs: $CI_PROJECT_DIR/docs/documentation/propulsion_design
           full-doc: True
-          output: docs/propulsion_design
-          doxy-cfg:
+          output: "docs/api/propulsion_design"
+          doxy-cfg: &common_doxyfile
             FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
             EXTRACT_ALL: YES
             BIBTEX_FILE: "docs/assets/bibtex/propulsion_design_literature.bib"
         ecological_assessment:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "ecological_assessment"
-            OUTPUT_DIR: "api/ecological_assessment"
-            BIBTEX_FILE: "docs/assets/bibtex/ecological_assessment_literature.bib"
           src-dirs: ../aircraft-design/ecological_assessment/src/
           full-doc: True
-        initial_sizing:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "initial_sizing"
-            OUTPUT_DIR: "api/initial_sizing"
-            BIBTEX_FILE: "docs/assets/bibtex/initial_sizing_literature.bib"
-          src-dirs: ../aircraft-design/initial_sizing/src/
-          full-doc: true
-        create_mission_xml:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "create_mission_xml"
-            OUTPUT_DIR: "api/create_mission_xml"
-            BIBTEX_FILE: "docs/assets/bibtex/create_mission_xml_literature.bib"
-          src-dirs: ../aircraft-design/create_mission_xml/src/
-          full-doc: true
-        fuselage_design:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "fuselage_design"
-            OUTPUT_DIR: "api/fuselage_design"
-            BIBTEX_FILE: "docs/assets/bibtex/fuselage_design_literature.bib"
-          src-dirs: ../aircraft-design/fuselage_design/src/
-          full-doc: true
-        wing_design:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "wing_design"
-            OUTPUT_DIR: "api/wing_design"
-            BIBTEX_FILE: "docs/assets/bibtex/wing_design_literature.bib"
-          src-dirs: ../aircraft-design/wing_design/src/
-          full-doc: True
-        empennage_design:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "empennage_design"
-            OUTPUT_DIR: "api/empennage_design"
-          src-dirs: ../aircraft-design/empennage_design/src/
-          full-doc: true
-        tank_design:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "tank_design"
-            OUTPUT_DIR: "api/tank_design"
-          src-dirs: ../aircraft-design/tank_design/src/
-          full-doc: true
-        landing_gear_design:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "landing_gear_design"
-            OUTPUT_DIR: "api/landing_gear_design"
-          src-dirs: ../aircraft-design/landing_gear_design/src/
-          full-doc: true
-        systems_design:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "systems_design"
-            OUTPUT_DIR: "api/systems_design"
-          src-dirs: ../aircraft-design/systems_design/src/
-          full-doc: true
-        aerodynamic_analysis:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "aerodynamic_analysis"
-            OUTPUT_DIR: "api/aerodynamic_analysis"
-          src-dirs: ../aircraft-design/aerodynamic_analysis/src/
-          full-doc: true
-        aircraftGeometry2:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "aircraftGeometry2"
-            OUTPUT_DIR: "api/aircraftGeometry2"
-          src-dirs: ../aircraft-design/libs/aircraftGeometry2/src/
-          full-doc: true
-        engine:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "engine"
-            OUTPUT_DIR: "api/engine"
-          src-dirs: ../aircraft-design/libs/engine/src/
-          full-doc: true
-        mission_analysis:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "mission_analysis"
-            OUTPUT_DIR: "api/mission_analysis"
-          src-dirs: ../aircraft-design/mission_analysis/src/
-          full-doc: true
-        weight_and_balance_analysis:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "weight_and_balance_analysis"
-            OUTPUT_DIR: "api/weight_and_balance_analysis"
-          src-dirs: ../aircraft-design/weight_and_balance_analysis/src/
-          full-doc: true
-        performance_assesment:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "performance_assesment"
-            OUTPUT_DIR: "api/performance_assesment"
-          src-dirs: ../aircraft-design/performance_assesment/src/
-          full-doc: true
-        cost_estimation:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "cost_estimation"
-            OUTPUT_DIR: "api/cost_estimation"
-          src-dirs: ../aircraft-design/cost_estimation/src/
-          full-doc: true
+          output: "docs/api/ecological_assessment"
+          doxy-cfg: *common_doxyfile  # Reuse common Doxyfile config
   - glightbox                             # Plugin for lightbox-style image and content viewing.
 
 # === Theme configuration ===
-- 
GitLab


From c2cf50a8ea3841bb28754f1089b3a993761a1a61 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Thu, 27 Feb 2025 12:27:51 +0100
Subject: [PATCH 04/33] API check

---
 .gitlab-ci.yml | 5 +++--
 mkdocs.yml     | 6 ++++--
 2 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 7c84958..51d18f1 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -69,8 +69,9 @@ pages:
     - pipenv install --dev  # Install all necessary dependencies
   script:
     # Build the MkDocs documentation site
-    - cp -r $CI_PROJECT_DIR/aircraft-design/propulsion_design/src $CI_PROJECT_DIR/docs/documentation/propulsion_design 
-    - ls -la $CI_PROJECT_DIR/docs/documentation/propulsion_design
+    - mkdir -p ./docs/documentation  # Ensure directory exists
+     # Copy only needed files using rsync
+    - rsync -av --include='src/' --include='src/**' --exclude='*' $CI_PROJECT_DIR/aircraft-design $CI_PROJECT_DIR/docs/documentation/aircraft-design
     - pipenv run mkdocs build --verbose --site-dir $CI_PROJECT_DIR/public
   needs:
     - clone  # This job depends on the successful completion of the clone job
diff --git a/mkdocs.yml b/mkdocs.yml
index d54a8d2..de95d96 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -73,18 +73,20 @@ plugins:
   - mkdoxy:
       projects:
         propulsion_design:
-          src-dirs: $CI_PROJECT_DIR/docs/documentation/propulsion_design
+          src-dirs: ../aircraft-design/propulsion_design/src/
           full-doc: True
           output: "docs/api/propulsion_design"
+          bibtex-file: docs/assets/bibtex/propulsion_design_literature.bib
           doxy-cfg: &common_doxyfile
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
-            BIBTEX_FILE: "docs/assets/bibtex/propulsion_design_literature.bib"
+            BIBTEX_FILE: 
         ecological_assessment:
           src-dirs: ../aircraft-design/ecological_assessment/src/
           full-doc: True
           output: "docs/api/ecological_assessment"
+          bibtex-file: docs/assets/bibtex/ecological_assessment_literature.bib
           doxy-cfg: *common_doxyfile  # Reuse common Doxyfile config
   - glightbox                             # Plugin for lightbox-style image and content viewing.
 
-- 
GitLab


From f69caff0bf867b498151134db58192d783de421b Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Thu, 27 Feb 2025 12:35:29 +0100
Subject: [PATCH 05/33] list contents of copied folder

---
 .gitlab-ci.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 51d18f1..bfac251 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -69,9 +69,9 @@ pages:
     - pipenv install --dev  # Install all necessary dependencies
   script:
     # Build the MkDocs documentation site
-    - mkdir -p ./docs/documentation  # Ensure directory exists
-     # Copy only needed files using rsync
-    - rsync -av --include='src/' --include='src/**' --exclude='*' $CI_PROJECT_DIR/aircraft-design $CI_PROJECT_DIR/docs/documentation/aircraft-design
+    - mkdir -p ./docs/documentation/propulsion_design/src
+    - cp -r $CI_PROJECT_DIR/aircraft-design/propulsion_design/src $CI_PROJECT_DIR/docs/documentation/propulsion_design/src
+    - ls -la $CI_PROJECT_DIR/docs
     - pipenv run mkdocs build --verbose --site-dir $CI_PROJECT_DIR/public
   needs:
     - clone  # This job depends on the successful completion of the clone job
-- 
GitLab


From fb50d2cbd8f8b4d4497ed151da1055225edd1b60 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Thu, 27 Feb 2025 13:02:23 +0100
Subject: [PATCH 06/33] Revert changes

---
 .gitlab-ci.yml |  2 +-
 mkdocs.yml     | 15 ++++-----------
 2 files changed, 5 insertions(+), 12 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index bfac251..fc2d615 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -71,7 +71,7 @@ pages:
     # Build the MkDocs documentation site
     - mkdir -p ./docs/documentation/propulsion_design/src
     - cp -r $CI_PROJECT_DIR/aircraft-design/propulsion_design/src $CI_PROJECT_DIR/docs/documentation/propulsion_design/src
-    - ls -la $CI_PROJECT_DIR/docs
+    - ls -la $CI_PROJECT_DIR/docs/documentation/propulsion_design/src
     - pipenv run mkdocs build --verbose --site-dir $CI_PROJECT_DIR/public
   needs:
     - clone  # This job depends on the successful completion of the clone job
diff --git a/mkdocs.yml b/mkdocs.yml
index de95d96..7e5888d 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -73,21 +73,14 @@ plugins:
   - mkdoxy:
       projects:
         propulsion_design:
-          src-dirs: ../aircraft-design/propulsion_design/src/
+          src-dirs: ../aircraft-design/propulsion_design/
           full-doc: True
-          output: "docs/api/propulsion_design"
-          bibtex-file: docs/assets/bibtex/propulsion_design_literature.bib
-          doxy-cfg: &common_doxyfile
+          output: docs/propulsion_design"
+          doxy-cfg: 
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
-            BIBTEX_FILE: 
-        ecological_assessment:
-          src-dirs: ../aircraft-design/ecological_assessment/src/
-          full-doc: True
-          output: "docs/api/ecological_assessment"
-          bibtex-file: docs/assets/bibtex/ecological_assessment_literature.bib
-          doxy-cfg: *common_doxyfile  # Reuse common Doxyfile config
+            BIBTEX_FILE: docs/assets/bibtex/propulsion_design_literature.bib
   - glightbox                             # Plugin for lightbox-style image and content viewing.
 
 # === Theme configuration ===
-- 
GitLab


From 310269e085a6ccdd8172ebcaa28f699d85232243 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Thu, 27 Feb 2025 13:39:14 +0100
Subject: [PATCH 07/33] Revert changes in config

---
 .gitlab-ci.yml | 8 ++++----
 mkdocs.yml     | 3 ++-
 2 files changed, 6 insertions(+), 5 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index fc2d615..639416e 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -35,7 +35,9 @@ clone:
       - cd aircraft-design
       # Clone libraries inside the aircraft-design directory
       - git clone --recurse-submodules https://gitlab-ci-token:${CI_JOB_TOKEN}@git.rwth-aachen.de/unicado/libraries libs/
-    
+      - mkdir -p $CI_PROJECT_DIR/docs/documentation/propulsion_design
+      - cp -r $CI_PROJECT_DIR/aircraft-design/propulsion_design/src* $CI_PROJECT_DIR/docs/documentation/propulsion_design
+      - ls -la $CI_PROJECT_DIR/docs/documentation/propulsion_design/src
       # Change to the project directory (useful for multi-directory repositories)
       - cd $CI_PROJECT_DIR
       - ls -la $CI_PROJECT_DIR
@@ -44,6 +46,7 @@ clone:
     paths:
       - $CI_PROJECT_DIR/aircraft-design
       - $CI_PROJECT_DIR/libraries
+      - $CI_PROJECT_DIR/docs/documentation
   rules:
     - if: '$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH'  # Run when the commit is on the default branch
       when: on_success  # Only run if the previous jobs are successful
@@ -69,9 +72,6 @@ pages:
     - pipenv install --dev  # Install all necessary dependencies
   script:
     # Build the MkDocs documentation site
-    - mkdir -p ./docs/documentation/propulsion_design/src
-    - cp -r $CI_PROJECT_DIR/aircraft-design/propulsion_design/src $CI_PROJECT_DIR/docs/documentation/propulsion_design/src
-    - ls -la $CI_PROJECT_DIR/docs/documentation/propulsion_design/src
     - pipenv run mkdocs build --verbose --site-dir $CI_PROJECT_DIR/public
   needs:
     - clone  # This job depends on the successful completion of the clone job
diff --git a/mkdocs.yml b/mkdocs.yml
index 7e5888d..c1da601 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -73,7 +73,8 @@ plugins:
   - mkdoxy:
       projects:
         propulsion_design:
-          src-dirs: ../aircraft-design/propulsion_design/
+          #src-dirs: ../aircraft-design/propulsion_design/src
+          src-dirs: ../docs/documentation/propulsion_design
           full-doc: True
           output: docs/propulsion_design"
           doxy-cfg: 
-- 
GitLab


From ce81658e52340eb4f658ea56d50702beb6c18e09 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Thu, 27 Feb 2025 14:05:39 +0100
Subject: [PATCH 08/33] copy aircraft-design

---
 .gitlab-ci.yml | 9 ++++-----
 mkdocs.yml     | 3 +--
 2 files changed, 5 insertions(+), 7 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 639416e..ae414f4 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -34,13 +34,9 @@ clone:
       - git clone https://gitlab-ci-token:${CI_JOB_TOKEN}@git.rwth-aachen.de/unicado/aircraft-design
       - cd aircraft-design
       # Clone libraries inside the aircraft-design directory
-      - git clone --recurse-submodules https://gitlab-ci-token:${CI_JOB_TOKEN}@git.rwth-aachen.de/unicado/libraries libs/
-      - mkdir -p $CI_PROJECT_DIR/docs/documentation/propulsion_design
-      - cp -r $CI_PROJECT_DIR/aircraft-design/propulsion_design/src* $CI_PROJECT_DIR/docs/documentation/propulsion_design
-      - ls -la $CI_PROJECT_DIR/docs/documentation/propulsion_design/src
+      - git clone --recurse-submodules https://gitlab-ci-token:${CI_JOB_TOKEN}@git.rwth-aachen.de/unicado/libraries lib
       # Change to the project directory (useful for multi-directory repositories)
       - cd $CI_PROJECT_DIR
-      - ls -la $CI_PROJECT_DIR
   artifacts:
     # Save the generated documentation as artifacts so they can be accessed later in the pipeline
     paths:
@@ -70,6 +66,9 @@ pages:
     - apt-get install -y doxygen
     - export DOXYGEN_BIN=/usr/bin/doxygen
     - pipenv install --dev  # Install all necessary dependencies
+    - mkdir -p $CI_PROJECT_DIR/docs/propulsion_design
+    - cp -r $CI_PROJECT_DIR/aircraft-design $CI_PROJECT_DIR/docs/documentation
+    - ls -la $CI_PROJECT_DIR/docs/propulsion_design/src
   script:
     # Build the MkDocs documentation site
     - pipenv run mkdocs build --verbose --site-dir $CI_PROJECT_DIR/public
diff --git a/mkdocs.yml b/mkdocs.yml
index c1da601..2ce09c9 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -73,8 +73,7 @@ plugins:
   - mkdoxy:
       projects:
         propulsion_design:
-          #src-dirs: ../aircraft-design/propulsion_design/src
-          src-dirs: ../docs/documentation/propulsion_design
+          src-dirs: ../aircraft-design/propulsion_design/src
           full-doc: True
           output: docs/propulsion_design"
           doxy-cfg: 
-- 
GitLab


From e6dbe4e5c7aedfae22e8d083f97e5b9bb74ec914 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Thu, 27 Feb 2025 14:11:00 +0100
Subject: [PATCH 09/33] Fix pipeline

---
 .gitlab-ci.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index ae414f4..9bd556a 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -68,7 +68,7 @@ pages:
     - pipenv install --dev  # Install all necessary dependencies
     - mkdir -p $CI_PROJECT_DIR/docs/propulsion_design
     - cp -r $CI_PROJECT_DIR/aircraft-design $CI_PROJECT_DIR/docs/documentation
-    - ls -la $CI_PROJECT_DIR/docs/propulsion_design/src
+    - ls -la $CI_PROJECT_DIR/docs/documentation
   script:
     # Build the MkDocs documentation site
     - pipenv run mkdocs build --verbose --site-dir $CI_PROJECT_DIR/public
-- 
GitLab


From 3c6e7ed9385d0ab5acfa395e64bba897acde8d2d Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Thu, 27 Feb 2025 14:23:11 +0100
Subject: [PATCH 10/33] Revert changes

---
 .gitlab-ci.yml |   4 +-
 mkdocs.yml     | 108 ++++++++++++++++++++++++++++++++++++++++++++++++-
 2 files changed, 108 insertions(+), 4 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 9bd556a..a7348fb 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -66,11 +66,9 @@ pages:
     - apt-get install -y doxygen
     - export DOXYGEN_BIN=/usr/bin/doxygen
     - pipenv install --dev  # Install all necessary dependencies
-    - mkdir -p $CI_PROJECT_DIR/docs/propulsion_design
-    - cp -r $CI_PROJECT_DIR/aircraft-design $CI_PROJECT_DIR/docs/documentation
-    - ls -la $CI_PROJECT_DIR/docs/documentation
   script:
     # Build the MkDocs documentation site
+    - cp -r $CI_PROJECT_DIR/aircraft-design $CI_PROJECT_DIR/docs/documentation
     - pipenv run mkdocs build --verbose --site-dir $CI_PROJECT_DIR/public
   needs:
     - clone  # This job depends on the successful completion of the clone job
diff --git a/mkdocs.yml b/mkdocs.yml
index 2ce09c9..966b9c9 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -73,7 +73,7 @@ plugins:
   - mkdoxy:
       projects:
         propulsion_design:
-          src-dirs: ../aircraft-design/propulsion_design/src
+          src-dirs: ../aircraft-design/propulsion_design/
           full-doc: True
           output: docs/propulsion_design"
           doxy-cfg: 
@@ -81,6 +81,112 @@ plugins:
             RECURSIVE: True
             EXTRACT_ALL: YES
             BIBTEX_FILE: docs/assets/bibtex/propulsion_design_literature.bib
+        initial_sizing:
+          src-dirs: ../aircraft-design/initial_sizing/
+          full-doc: true
+          output: docs/initial_sizing
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+        create_mission_xml:
+          src-dirs: ../aircraft-design/create_mission_xml/
+          full-doc: True
+          output: docs/create_mission_xml
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+            BIBTEX_FILE: docs/assets/bibtex/create_mission_xml_literature.bib
+        fuselage_design:
+          src-dirs: ../aircraft-design/fuselage_design/
+          full-doc: true
+          output: docs/fuselage_design
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+        wing_design:
+          src-dirs: ../aircraft-design/wing_design/
+          full-doc: True
+          output: docs/wing_design
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+        empennage_design:
+          src-dirs: ../aircraft-design/empennage_design/
+          full-doc: true
+          output: docs/empennage_design
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+        tank_design:
+          src-dirs: ../aircraft-design/tank_design/
+          full-doc: true
+          output: docs/tank_design
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+        landing_gear_design:
+          src-dirs: ../aircraft-design/landing_gear_design/
+          full-doc: true
+          output: docs/landing_gear_design
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+        systems_design:
+          src-dirs: ../aircraft-design/systems_design/
+          full-doc: true
+          output: docs/systems_design
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+        ecological_assessment:
+          src-dirs: ../aircraft-design/ecological_assessment/
+          full-doc: true
+          output: docs/ecological_assessment
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+            BIBTEX_FILE: docs/assets/bibtex/ecological_assessment_literature.bib
+        performance_assessment:
+          src-dirs: ../aircraft-design/performance_assessment/
+          full-doc: True
+          output: docs/propulsion_design
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+        aerodynamic_analysis:
+          src-dirs: ../aircraft-design/aerodynamic_analysis/
+          full-doc: true
+          output: docs/aerodynamic_analysis
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+        aircraftGeometry2:
+          src-dirs: ../aircraft-design/libs/aircraftGeometry2/
+          full-doc: true
+          output: docs/aircraftGeometry2
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+        engine:
+          src-dirs: ../aircraft-design/libs/engine/
+          full-doc: true
+          output: docs/engine
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
   - glightbox                             # Plugin for lightbox-style image and content viewing.
 
 # === Theme configuration ===
-- 
GitLab


From c56d0f53aa74b2f35f9be87aabf676b5c713578c Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Thu, 27 Feb 2025 14:43:16 +0100
Subject: [PATCH 11/33] remove copying

---
 .gitlab-ci.yml | 1 -
 mkdocs.yml     | 2 +-
 2 files changed, 1 insertion(+), 2 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index a7348fb..0c2c063 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -68,7 +68,6 @@ pages:
     - pipenv install --dev  # Install all necessary dependencies
   script:
     # Build the MkDocs documentation site
-    - cp -r $CI_PROJECT_DIR/aircraft-design $CI_PROJECT_DIR/docs/documentation
     - pipenv run mkdocs build --verbose --site-dir $CI_PROJECT_DIR/public
   needs:
     - clone  # This job depends on the successful completion of the clone job
diff --git a/mkdocs.yml b/mkdocs.yml
index 966b9c9..25ab7d2 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -335,7 +335,7 @@ nav:                                      # Customizes the main navigation struc
             - Introduction: documentation/analysis/weight_and_balance_analysis/index.md
             - Basic Concepts: documentation/analysis/weight_and_balance_analysis/basic-concepts.md
             - Usage: documentation/analysis/weight_and_balance_analysis/usage.md
-          #  # - API Reference: # TODO define for Python
+          # - API Reference: # TODO define for Python
           - Performance Assessment:
             - Introduction: documentation/analysis/performance_assessment/index.md
             - Getting Started: documentation/analysis/performance_assessment/getting_started.md
-- 
GitLab


From fd6eba50f5f26082575e8583ce2efa4d18fda667 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Thu, 27 Feb 2025 15:04:06 +0100
Subject: [PATCH 12/33] remove public folder

---
 .gitlab-ci.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 0c2c063..5a4cad4 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -68,7 +68,7 @@ pages:
     - pipenv install --dev  # Install all necessary dependencies
   script:
     # Build the MkDocs documentation site
-    - pipenv run mkdocs build --verbose --site-dir $CI_PROJECT_DIR/public
+    - pipenv run mkdocs build
   needs:
     - clone  # This job depends on the successful completion of the clone job
   artifacts:
-- 
GitLab


From 9aa5fc6b8d7a0545df4793e91a5073bdb6101ae9 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Thu, 27 Feb 2025 19:01:07 +0100
Subject: [PATCH 13/33] Fix pipeline

---
 .gitlab-ci.yml | 2 +-
 mkdocs.yml     | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 5a4cad4..0c2c063 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -68,7 +68,7 @@ pages:
     - pipenv install --dev  # Install all necessary dependencies
   script:
     # Build the MkDocs documentation site
-    - pipenv run mkdocs build
+    - pipenv run mkdocs build --verbose --site-dir $CI_PROJECT_DIR/public
   needs:
     - clone  # This job depends on the successful completion of the clone job
   artifacts:
diff --git a/mkdocs.yml b/mkdocs.yml
index 25ab7d2..4f13fc1 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -75,7 +75,7 @@ plugins:
         propulsion_design:
           src-dirs: ../aircraft-design/propulsion_design/
           full-doc: True
-          output: docs/propulsion_design"
+          output: docs/propulsion_design
           doxy-cfg: 
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
-- 
GitLab


From c83a8f88921e530ed4d8b5f982aa5d79faa4a552 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Thu, 27 Feb 2025 19:51:57 +0100
Subject: [PATCH 14/33] Fix output path

---
 mkdocs.yml | 28 ++++++++++++++--------------
 1 file changed, 14 insertions(+), 14 deletions(-)

diff --git a/mkdocs.yml b/mkdocs.yml
index 4f13fc1..3e81b09 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -75,8 +75,8 @@ plugins:
         propulsion_design:
           src-dirs: ../aircraft-design/propulsion_design/
           full-doc: True
-          output: docs/propulsion_design
           doxy-cfg: 
+            OUTPUT_DIRECTORY: "./docs/propulsion_design"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
@@ -84,16 +84,16 @@ plugins:
         initial_sizing:
           src-dirs: ../aircraft-design/initial_sizing/
           full-doc: true
-          output: docs/initial_sizing
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/initial_sizing"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
         create_mission_xml:
           src-dirs: ../aircraft-design/create_mission_xml/
           full-doc: True
-          output: docs/create_mission_xml
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/create_mission_xml"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
@@ -101,56 +101,56 @@ plugins:
         fuselage_design:
           src-dirs: ../aircraft-design/fuselage_design/
           full-doc: true
-          output: docs/fuselage_design
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/fuselage_design"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
         wing_design:
           src-dirs: ../aircraft-design/wing_design/
           full-doc: True
-          output: docs/wing_design
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/wing_design"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
         empennage_design:
           src-dirs: ../aircraft-design/empennage_design/
           full-doc: true
-          output: docs/empennage_design
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/empennage_design"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
         tank_design:
           src-dirs: ../aircraft-design/tank_design/
           full-doc: true
-          output: docs/tank_design
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/tank_design"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
         landing_gear_design:
           src-dirs: ../aircraft-design/landing_gear_design/
           full-doc: true
-          output: docs/landing_gear_design
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/landing_gear_design"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
         systems_design:
           src-dirs: ../aircraft-design/systems_design/
           full-doc: true
-          output: docs/systems_design
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/systems_design"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
         ecological_assessment:
           src-dirs: ../aircraft-design/ecological_assessment/
           full-doc: true
-          output: docs/ecological_assessment
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/ecological_assessment"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
@@ -158,32 +158,32 @@ plugins:
         performance_assessment:
           src-dirs: ../aircraft-design/performance_assessment/
           full-doc: True
-          output: docs/propulsion_design
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/propulsion_design"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
         aerodynamic_analysis:
           src-dirs: ../aircraft-design/aerodynamic_analysis/
           full-doc: true
-          output: docs/aerodynamic_analysis
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/aerodynamic_analysis"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
         aircraftGeometry2:
           src-dirs: ../aircraft-design/libs/aircraftGeometry2/
           full-doc: true
-          output: docs/aircraftGeometry2
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/aircraftGeometry2"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
         engine:
           src-dirs: ../aircraft-design/libs/engine/
           full-doc: true
-          output: docs/engine
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/engine"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
-- 
GitLab


From d9f3915e4e55a18503a0b044eecceb33a3149fd6 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Thu, 27 Feb 2025 20:25:58 +0100
Subject: [PATCH 15/33] revert mkdoxy settings

---
 mkdocs.yml | 42 ------------------------------------------
 1 file changed, 42 deletions(-)

diff --git a/mkdocs.yml b/mkdocs.yml
index 3e81b09..33e4f7f 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -77,116 +77,74 @@ plugins:
           full-doc: True
           doxy-cfg: 
             OUTPUT_DIRECTORY: "./docs/propulsion_design"
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
             BIBTEX_FILE: docs/assets/bibtex/propulsion_design_literature.bib
         initial_sizing:
           src-dirs: ../aircraft-design/initial_sizing/
           full-doc: true
           doxy-cfg:
             OUTPUT_DIRECTORY: "./docs/initial_sizing"
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         create_mission_xml:
           src-dirs: ../aircraft-design/create_mission_xml/
           full-doc: True
           doxy-cfg:
             OUTPUT_DIRECTORY: "./docs/create_mission_xml"
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
             BIBTEX_FILE: docs/assets/bibtex/create_mission_xml_literature.bib
         fuselage_design:
           src-dirs: ../aircraft-design/fuselage_design/
           full-doc: true
           doxy-cfg:
             OUTPUT_DIRECTORY: "./docs/fuselage_design"
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         wing_design:
           src-dirs: ../aircraft-design/wing_design/
           full-doc: True
           doxy-cfg:
             OUTPUT_DIRECTORY: "./docs/wing_design"
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         empennage_design:
           src-dirs: ../aircraft-design/empennage_design/
           full-doc: true
           doxy-cfg:
             OUTPUT_DIRECTORY: "./docs/empennage_design"
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         tank_design:
           src-dirs: ../aircraft-design/tank_design/
           full-doc: true
           doxy-cfg:
             OUTPUT_DIRECTORY: "./docs/tank_design"
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         landing_gear_design:
           src-dirs: ../aircraft-design/landing_gear_design/
           full-doc: true
           doxy-cfg:
             OUTPUT_DIRECTORY: "./docs/landing_gear_design"
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         systems_design:
           src-dirs: ../aircraft-design/systems_design/
           full-doc: true
           doxy-cfg:
             OUTPUT_DIRECTORY: "./docs/systems_design"
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         ecological_assessment:
           src-dirs: ../aircraft-design/ecological_assessment/
           full-doc: true
           doxy-cfg:
             OUTPUT_DIRECTORY: "./docs/ecological_assessment"
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
             BIBTEX_FILE: docs/assets/bibtex/ecological_assessment_literature.bib
         performance_assessment:
           src-dirs: ../aircraft-design/performance_assessment/
           full-doc: True
           doxy-cfg:
             OUTPUT_DIRECTORY: "./docs/propulsion_design"
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         aerodynamic_analysis:
           src-dirs: ../aircraft-design/aerodynamic_analysis/
           full-doc: true
           doxy-cfg:
             OUTPUT_DIRECTORY: "./docs/aerodynamic_analysis"
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         aircraftGeometry2:
           src-dirs: ../aircraft-design/libs/aircraftGeometry2/
           full-doc: true
           doxy-cfg:
             OUTPUT_DIRECTORY: "./docs/aircraftGeometry2"
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         engine:
           src-dirs: ../aircraft-design/libs/engine/
           full-doc: true
           doxy-cfg:
             OUTPUT_DIRECTORY: "./docs/engine"
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
   - glightbox                             # Plugin for lightbox-style image and content viewing.
 
 # === Theme configuration ===
-- 
GitLab


From 4cba7cfca7c927b41625bf9b8e4dedbe764e0170 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Thu, 27 Feb 2025 21:21:43 +0100
Subject: [PATCH 16/33] Fix issues in mkdoxy settings

---
 mkdocs.yml | 101 ++++++++++++++++++++++++++++++++---------------------
 1 file changed, 61 insertions(+), 40 deletions(-)

diff --git a/mkdocs.yml b/mkdocs.yml
index 33e4f7f..829d81a 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -75,76 +75,111 @@ plugins:
         propulsion_design:
           src-dirs: ../aircraft-design/propulsion_design/
           full-doc: True
-          doxy-cfg: 
-            OUTPUT_DIRECTORY: "./docs/propulsion_design"
+          output: docs/propulsion_design
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
             BIBTEX_FILE: docs/assets/bibtex/propulsion_design_literature.bib
         initial_sizing:
           src-dirs: ../aircraft-design/initial_sizing/
           full-doc: true
+          output: docs/initial_sizing
           doxy-cfg:
-            OUTPUT_DIRECTORY: "./docs/initial_sizing"
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         create_mission_xml:
           src-dirs: ../aircraft-design/create_mission_xml/
           full-doc: True
+          output: docs/create_mission_xml
           doxy-cfg:
-            OUTPUT_DIRECTORY: "./docs/create_mission_xml"
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
             BIBTEX_FILE: docs/assets/bibtex/create_mission_xml_literature.bib
         fuselage_design:
           src-dirs: ../aircraft-design/fuselage_design/
           full-doc: true
+          output: docs/fuselage_design
           doxy-cfg:
-            OUTPUT_DIRECTORY: "./docs/fuselage_design"
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         wing_design:
           src-dirs: ../aircraft-design/wing_design/
           full-doc: True
+          output: docs/wing_design
           doxy-cfg:
-            OUTPUT_DIRECTORY: "./docs/wing_design"
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         empennage_design:
           src-dirs: ../aircraft-design/empennage_design/
           full-doc: true
+          output: docs/empennage_design
           doxy-cfg:
-            OUTPUT_DIRECTORY: "./docs/empennage_design"
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         tank_design:
           src-dirs: ../aircraft-design/tank_design/
           full-doc: true
+          output: docs/tank_design
           doxy-cfg:
-            OUTPUT_DIRECTORY: "./docs/tank_design"
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         landing_gear_design:
           src-dirs: ../aircraft-design/landing_gear_design/
           full-doc: true
+          output: docs/landing_gear_design
           doxy-cfg:
-            OUTPUT_DIRECTORY: "./docs/landing_gear_design"
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         systems_design:
           src-dirs: ../aircraft-design/systems_design/
           full-doc: true
+          output: docs/systems_design
           doxy-cfg:
-            OUTPUT_DIRECTORY: "./docs/systems_design"
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         ecological_assessment:
           src-dirs: ../aircraft-design/ecological_assessment/
           full-doc: true
+          output: docs/ecological_assessment
           doxy-cfg:
-            OUTPUT_DIRECTORY: "./docs/ecological_assessment"
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
             BIBTEX_FILE: docs/assets/bibtex/ecological_assessment_literature.bib
-        performance_assessment:
-          src-dirs: ../aircraft-design/performance_assessment/
-          full-doc: True
-          doxy-cfg:
-            OUTPUT_DIRECTORY: "./docs/propulsion_design"
         aerodynamic_analysis:
           src-dirs: ../aircraft-design/aerodynamic_analysis/
           full-doc: true
+          output: docs/aerodynamic_analysis
           doxy-cfg:
-            OUTPUT_DIRECTORY: "./docs/aerodynamic_analysis"
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         aircraftGeometry2:
           src-dirs: ../aircraft-design/libs/aircraftGeometry2/
           full-doc: true
+          output: docs/aircraftGeometry2
           doxy-cfg:
-            OUTPUT_DIRECTORY: "./docs/aircraftGeometry2"
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         engine:
           src-dirs: ../aircraft-design/libs/engine/
           full-doc: true
+          output: docs/engine
           doxy-cfg:
-            OUTPUT_DIRECTORY: "./docs/engine"
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+
   - glightbox                             # Plugin for lightbox-style image and content viewing.
 
 # === Theme configuration ===
@@ -213,7 +248,7 @@ nav:                                      # Customizes the main navigation struc
             - Design Method: documentation/sizing/fuselage_design/design_method.md
             - Run your First Design: documentation/sizing/fuselage_design/run_your_first_design.md
             - Software Architecture: documentation/sizing/fuselage_design/software_architecture.md
-          # - API Reference: # TODO define for Python
+          #  # - API Reference: # TODO define for Python
           - Wing Design:
             - Introduction: documentation/sizing/wing_design/index.md
             - Getting Started: documentation/sizing/wing_design/getting-started.md
@@ -245,7 +280,6 @@ nav:                                      # Customizes the main navigation struc
             # - API Reference: # TODO define for Python
           - Propulsion Design:
             - Introduction: documentation/sizing/propulsion_design/index.md
-            - Overview: documentation/sizing/propulsion_design/overview.md
             - Getting Started: documentation/sizing/propulsion_design/getting-started.md
             - Engineering Principles: documentation/sizing/propulsion_design/engineering_principles.md
             - Software Architecture: documentation/sizing/propulsion_design/software_architecture.md
@@ -277,8 +311,8 @@ nav:                                      # Customizes the main navigation struc
               - systems_design/namespaces.md
               - systems_design/files.md
               - systems_design/functions.md
-      - Analysis:
-          - documentation/analysis/index.md # Link to analysis module page.
+      - Analysis:   
+          - Modules: documentation/analysis.md # Link to analysis module page.
           - Mission Analysis:
             - Introduction: documentation/analysis/mission_analysis/index.md
             - Getting Started: documentation/analysis/mission_analysis/getting_started.md
@@ -293,16 +327,7 @@ nav:                                      # Customizes the main navigation struc
             - Introduction: documentation/analysis/weight_and_balance_analysis/index.md
             - Basic Concepts: documentation/analysis/weight_and_balance_analysis/basic-concepts.md
             - Usage: documentation/analysis/weight_and_balance_analysis/usage.md
-          # - API Reference: # TODO define for Python
-          - Performance Assessment:
-            - Introduction: documentation/analysis/performance_assessment/index.md
-            - Getting Started: documentation/analysis/performance_assessment/getting_started.md
-            - Capabilities:
-              - Payload-Range Diagram: documentation/analysis/performance_assessment/payload_range_diagram.md
-              - Takeoff Performance: documentation/analysis/performance_assessment/takeoff_performance.md
-              - Landing Performance: documentation/analysis/performance_assessment/landing_performance.md
-              - Flight Envelope: documentation/analysis/performance_assessment/flight_envelope.md
-              - Ceiling Performance: documentation/analysis/performance_assessment/ceiling_performance.md
+          #  # - API Reference: # TODO define for Python
           - Cost Estimation:
             - Introduction: documentation/analysis/cost_estimation/index.md
             - Getting Started: documentation/analysis/cost_estimation/getting_started.md
@@ -333,18 +358,14 @@ nav:                                      # Customizes the main navigation struc
         - AircraftGeometry2:
           - Introduction: documentation/libraries/aircraftGeometry2/index.md
           - Getting Started: documentation/libraries/aircraftGeometry2/getting-started.md
-          - Tutorial:
-            - Overview: documentation/libraries/aircraftGeometry2/tutorial.md
-            - Geometry: documentation/libraries/aircraftGeometry2/tutorial-geometry.md
-            - Factory: documentation/libraries/aircraftGeometry2/tutorial-factory.md
-            - Convert: documentation/libraries/aircraftGeometry2/tutorial-convert.md
+          - Tutorial: documentation/libraries/aircraftGeometry2/tutorial.md
           - API Reference:
             - aircraftGeometry2/classes.md
             - aircraftGeometry2/namespaces.md
             - aircraftGeometry2/files.md
             - aircraftGeometry2/functions.md
         - engine:
-          - Introduction: documentation/libraries/engine/index.md
+          - Introduction: documentation/libraries/engine/index.md 
     - Utilities: documentation/additional_software.md
     - Workflow: 'workflow.md' # Link to the workflow page.
   - Get Involved:
@@ -386,4 +407,4 @@ nav:                                      # Customizes the main navigation struc
       - About us: 'about.md'              # Link to the about page.
       - License: 'license.md'             # Link to license information.
       - Contact: 'contact.md'             # Link to contact page.
-      - Partners: 'partners.md'           # Link to partners page.
+      - Partners: 'partners.md'           # Link to partners page.
\ No newline at end of file
-- 
GitLab


From 0e37ec887f621ec52a58e0718de80b9f14b4860e Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 07:57:54 +0100
Subject: [PATCH 17/33] provide INPUT in doxy-cfg

---
 mkdocs.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/mkdocs.yml b/mkdocs.yml
index 829d81a..fa39477 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -75,11 +75,12 @@ plugins:
         propulsion_design:
           src-dirs: ../aircraft-design/propulsion_design/
           full-doc: True
-          output: docs/propulsion_design
           doxy-cfg:
+            INPUT: ../aircraft-design/propulsion_design/src
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
+            OUTPUT_DIRECTORY: "./docs/propulsion_design"
             BIBTEX_FILE: docs/assets/bibtex/propulsion_design_literature.bib
         initial_sizing:
           src-dirs: ../aircraft-design/initial_sizing/
-- 
GitLab


From c52f2a550988021ef86d8decc4e263c265d363ed Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 08:12:19 +0100
Subject: [PATCH 18/33] Provide absolute path to INPUT

---
 mkdocs.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/mkdocs.yml b/mkdocs.yml
index fa39477..64f101d 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -76,7 +76,8 @@ plugins:
           src-dirs: ../aircraft-design/propulsion_design/
           full-doc: True
           doxy-cfg:
-            INPUT: ../aircraft-design/propulsion_design/src
+           # INPUT: ../aircraft-design/propulsion_design/src
+            INPUT: $CI_PROJECT_DIR/aircraft-design/propulsion_design/src
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
-- 
GitLab


From b7c4b2a15d7f14f4a4e99362cd9949752a27c74d Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 08:42:13 +0100
Subject: [PATCH 19/33] include all file types

---
 mkdocs.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/mkdocs.yml b/mkdocs.yml
index 64f101d..ecac0c9 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -73,12 +73,12 @@ plugins:
   - mkdoxy:
       projects:
         propulsion_design:
-          src-dirs: ../aircraft-design/propulsion_design/
+          src-dirs: ../aircraft-design/propulsion_design
           full-doc: True
           doxy-cfg:
            # INPUT: ../aircraft-design/propulsion_design/src
-            INPUT: $CI_PROJECT_DIR/aircraft-design/propulsion_design/src
-            FILE_PATTERNS: "*.cpp *.h"
+            INPUT: ../aircraft-design/propulsion_design
+            FILE_PATTERNS: "*.cpp *.h *.md *.png *.svg"
             RECURSIVE: True
             EXTRACT_ALL: YES
             OUTPUT_DIRECTORY: "./docs/propulsion_design"
-- 
GitLab


From 3b0b35a079ff501e524ccc482b6cbb5e33acaeec Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 08:52:43 +0100
Subject: [PATCH 20/33] revert commit

---
 mkdocs.yml | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/mkdocs.yml b/mkdocs.yml
index 64f101d..fa39477 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -76,8 +76,7 @@ plugins:
           src-dirs: ../aircraft-design/propulsion_design/
           full-doc: True
           doxy-cfg:
-           # INPUT: ../aircraft-design/propulsion_design/src
-            INPUT: $CI_PROJECT_DIR/aircraft-design/propulsion_design/src
+            INPUT: ../aircraft-design/propulsion_design/src
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
-- 
GitLab


From a023b3357302d4efe99a50b9336320e24aa2bb16 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 10:04:30 +0100
Subject: [PATCH 21/33] Common Doxyfile

---
 Doxyfile   | 2872 ++++++++++++++++++++++++++++++++++++++++++++++++++++
 mkdocs.yml |  191 ++--
 2 files changed, 2967 insertions(+), 96 deletions(-)
 create mode 100644 Doxyfile

diff --git a/Doxyfile b/Doxyfile
new file mode 100644
index 0000000..4a0794a
--- /dev/null
+++ b/Doxyfile
@@ -0,0 +1,2872 @@
+# Doxyfile 1.9.8
+
+# This file describes the settings to be used by the documentation system
+# doxygen (www.doxygen.org) for a project.
+#
+# All text after a double hash (##) is considered a comment and is placed in
+# front of the TAG it is preceding.
+#
+# All text after a single hash (#) is considered a comment and will be ignored.
+# The format is:
+# TAG = value [value, ...]
+# For lists, items can also be appended using:
+# TAG += value [value, ...]
+# Values that contain spaces should be placed between quotes (\" \").
+#
+# Note:
+#
+# Use doxygen to compare the used configuration file with the template
+# configuration file:
+# doxygen -x [configFile]
+# Use doxygen to compare the used configuration file with the template
+# configuration file without replacing the environment variables or CMake type
+# replacement variables:
+# doxygen -x_noenv [configFile]
+
+#---------------------------------------------------------------------------
+# Project related configuration options
+#---------------------------------------------------------------------------
+
+# This tag specifies the encoding used for all characters in the configuration
+# file that follow. The default is UTF-8 which is also the encoding used for all
+# text before the first occurrence of this tag. Doxygen uses libiconv (or the
+# iconv built into libc) for the transcoding. See
+# https://www.gnu.org/software/libiconv/ for the list of possible encodings.
+# The default value is: UTF-8.
+
+DOXYFILE_ENCODING      = UTF-8
+
+# The PROJECT_NAME tag is a single word (or a sequence of words surrounded by
+# double-quotes, unless you are using Doxywizard) that should identify the
+# project for which the documentation is generated. This name is used in the
+# title of most generated pages and in a few other places.
+# The default value is: My Project.
+
+PROJECT_NAME           = @PROJECT_NAME@
+
+# The PROJECT_NUMBER tag can be used to enter a project or revision number. This
+# could be handy for archiving the generated documentation or if some version
+# control system is used.
+
+PROJECT_NUMBER         =
+
+# Using the PROJECT_BRIEF tag one can provide an optional one line description
+# for a project that appears at the top of each page and should give viewer a
+# quick idea about the purpose of the project. Keep the description short.
+
+PROJECT_BRIEF          =
+
+# With the PROJECT_LOGO tag one can specify a logo or an icon that is included
+# in the documentation. The maximum height of the logo should not exceed 55
+# pixels and the maximum width should not exceed 200 pixels. Doxygen will copy
+# the logo to the output directory.
+
+PROJECT_LOGO           =
+
+# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) path
+# into which the generated documentation will be written. If a relative path is
+# entered, it will be relative to the location where doxygen was started. If
+# left blank the current directory will be used.
+
+OUTPUT_DIRECTORY       = @OUTPUT_DIR@
+
+# If the CREATE_SUBDIRS tag is set to YES then doxygen will create up to 4096
+# sub-directories (in 2 levels) under the output directory of each output format
+# and will distribute the generated files over these directories. Enabling this
+# option can be useful when feeding doxygen a huge amount of source files, where
+# putting all generated files in the same directory would otherwise causes
+# performance problems for the file system. Adapt CREATE_SUBDIRS_LEVEL to
+# control the number of sub-directories.
+# The default value is: NO.
+
+CREATE_SUBDIRS         = NO
+
+# Controls the number of sub-directories that will be created when
+# CREATE_SUBDIRS tag is set to YES. Level 0 represents 16 directories, and every
+# level increment doubles the number of directories, resulting in 4096
+# directories at level 8 which is the default and also the maximum value. The
+# sub-directories are organized in 2 levels, the first level always has a fixed
+# number of 16 directories.
+# Minimum value: 0, maximum value: 8, default value: 8.
+# This tag requires that the tag CREATE_SUBDIRS is set to YES.
+
+CREATE_SUBDIRS_LEVEL   = 8
+
+# If the ALLOW_UNICODE_NAMES tag is set to YES, doxygen will allow non-ASCII
+# characters to appear in the names of generated files. If set to NO, non-ASCII
+# characters will be escaped, for example _xE3_x81_x84 will be used for Unicode
+# U+3044.
+# The default value is: NO.
+
+ALLOW_UNICODE_NAMES    = NO
+
+# The OUTPUT_LANGUAGE tag is used to specify the language in which all
+# documentation generated by doxygen is written. Doxygen will use this
+# information to generate all constant output in the proper language.
+# Possible values are: Afrikaans, Arabic, Armenian, Brazilian, Bulgarian,
+# Catalan, Chinese, Chinese-Traditional, Croatian, Czech, Danish, Dutch, English
+# (United States), Esperanto, Farsi (Persian), Finnish, French, German, Greek,
+# Hindi, Hungarian, Indonesian, Italian, Japanese, Japanese-en (Japanese with
+# English messages), Korean, Korean-en (Korean with English messages), Latvian,
+# Lithuanian, Macedonian, Norwegian, Persian (Farsi), Polish, Portuguese,
+# Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak, Slovene, Spanish,
+# Swedish, Turkish, Ukrainian and Vietnamese.
+# The default value is: English.
+
+OUTPUT_LANGUAGE        = English
+
+# If the BRIEF_MEMBER_DESC tag is set to YES, doxygen will include brief member
+# descriptions after the members that are listed in the file and class
+# documentation (similar to Javadoc). Set to NO to disable this.
+# The default value is: YES.
+
+BRIEF_MEMBER_DESC      = YES
+
+# If the REPEAT_BRIEF tag is set to YES, doxygen will prepend the brief
+# description of a member or function before the detailed description
+#
+# Note: If both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the
+# brief descriptions will be completely suppressed.
+# The default value is: YES.
+
+REPEAT_BRIEF           = YES
+
+# This tag implements a quasi-intelligent brief description abbreviator that is
+# used to form the text in various listings. Each string in this list, if found
+# as the leading text of the brief description, will be stripped from the text
+# and the result, after processing the whole list, is used as the annotated
+# text. Otherwise, the brief description is used as-is. If left blank, the
+# following values are used ($name is automatically replaced with the name of
+# the entity):The $name class, The $name widget, The $name file, is, provides,
+# specifies, contains, represents, a, an and the.
+
+ABBREVIATE_BRIEF       = "The $name class" \
+                         "The $name widget" \
+                         "The $name file" \
+                         is \
+                         provides \
+                         specifies \
+                         contains \
+                         represents \
+                         a \
+                         an \
+                         the
+
+# If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then
+# doxygen will generate a detailed section even if there is only a brief
+# description.
+# The default value is: NO.
+
+ALWAYS_DETAILED_SEC    = NO
+
+# If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all
+# inherited members of a class in the documentation of that class as if those
+# members were ordinary class members. Constructors, destructors and assignment
+# operators of the base classes will not be shown.
+# The default value is: NO.
+
+INLINE_INHERITED_MEMB  = NO
+
+# If the FULL_PATH_NAMES tag is set to YES, doxygen will prepend the full path
+# before files name in the file list and in the header files. If set to NO the
+# shortest path that makes the file name unique will be used
+# The default value is: YES.
+
+FULL_PATH_NAMES        = YES
+
+# The STRIP_FROM_PATH tag can be used to strip a user-defined part of the path.
+# Stripping is only done if one of the specified strings matches the left-hand
+# part of the path. The tag can be used to show relative paths in the file list.
+# If left blank the directory from which doxygen is run is used as the path to
+# strip.
+#
+# Note that you can specify absolute paths here, but also relative paths, which
+# will be relative from the directory where doxygen is started.
+# This tag requires that the tag FULL_PATH_NAMES is set to YES.
+
+STRIP_FROM_PATH        =
+
+# The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of the
+# path mentioned in the documentation of a class, which tells the reader which
+# header file to include in order to use a class. If left blank only the name of
+# the header file containing the class definition is used. Otherwise one should
+# specify the list of include paths that are normally passed to the compiler
+# using the -I flag.
+
+STRIP_FROM_INC_PATH    =
+
+# If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter (but
+# less readable) file names. This can be useful is your file systems doesn't
+# support long names like on DOS, Mac, or CD-ROM.
+# The default value is: NO.
+
+SHORT_NAMES            = NO
+
+# If the JAVADOC_AUTOBRIEF tag is set to YES then doxygen will interpret the
+# first line (until the first dot) of a Javadoc-style comment as the brief
+# description. If set to NO, the Javadoc-style will behave just like regular Qt-
+# style comments (thus requiring an explicit @brief command for a brief
+# description.)
+# The default value is: NO.
+
+JAVADOC_AUTOBRIEF      = NO
+
+# If the JAVADOC_BANNER tag is set to YES then doxygen will interpret a line
+# such as
+# /***************
+# as being the beginning of a Javadoc-style comment "banner". If set to NO, the
+# Javadoc-style will behave just like regular comments and it will not be
+# interpreted by doxygen.
+# The default value is: NO.
+
+JAVADOC_BANNER         = NO
+
+# If the QT_AUTOBRIEF tag is set to YES then doxygen will interpret the first
+# line (until the first dot) of a Qt-style comment as the brief description. If
+# set to NO, the Qt-style will behave just like regular Qt-style comments (thus
+# requiring an explicit \brief command for a brief description.)
+# The default value is: NO.
+
+QT_AUTOBRIEF           = NO
+
+# The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make doxygen treat a
+# multi-line C++ special comment block (i.e. a block of //! or /// comments) as
+# a brief description. This used to be the default behavior. The new default is
+# to treat a multi-line C++ comment block as a detailed description. Set this
+# tag to YES if you prefer the old behavior instead.
+#
+# Note that setting this tag to YES also means that rational rose comments are
+# not recognized any more.
+# The default value is: NO.
+
+MULTILINE_CPP_IS_BRIEF = NO
+
+# By default Python docstrings are displayed as preformatted text and doxygen's
+# special commands cannot be used. By setting PYTHON_DOCSTRING to NO the
+# doxygen's special commands can be used and the contents of the docstring
+# documentation blocks is shown as doxygen documentation.
+# The default value is: YES.
+
+PYTHON_DOCSTRING       = YES
+
+# If the INHERIT_DOCS tag is set to YES then an undocumented member inherits the
+# documentation from any documented member that it re-implements.
+# The default value is: YES.
+
+INHERIT_DOCS           = YES
+
+# If the SEPARATE_MEMBER_PAGES tag is set to YES then doxygen will produce a new
+# page for each member. If set to NO, the documentation of a member will be part
+# of the file/class/namespace that contains it.
+# The default value is: NO.
+
+SEPARATE_MEMBER_PAGES  = NO
+
+# The TAB_SIZE tag can be used to set the number of spaces in a tab. Doxygen
+# uses this value to replace tabs by spaces in code fragments.
+# Minimum value: 1, maximum value: 16, default value: 4.
+
+TAB_SIZE               = 4
+
+# This tag can be used to specify a number of aliases that act as commands in
+# the documentation. An alias has the form:
+# name=value
+# For example adding
+# "sideeffect=@par Side Effects:^^"
+# will allow you to put the command \sideeffect (or @sideeffect) in the
+# documentation, which will result in a user-defined paragraph with heading
+# "Side Effects:". Note that you cannot put \n's in the value part of an alias
+# to insert newlines (in the resulting output). You can put ^^ in the value part
+# of an alias to insert a newline as if a physical newline was in the original
+# file. When you need a literal { or } or , in the value part of an alias you
+# have to escape them by means of a backslash (\), this can lead to conflicts
+# with the commands \{ and \} for these it is advised to use the version @{ and
+# @} or use a double escape (\\{ and \\})
+
+ALIASES                =
+
+# Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C sources
+# only. Doxygen will then generate output that is more tailored for C. For
+# instance, some of the names that are used will be different. The list of all
+# members will be omitted, etc.
+# The default value is: NO.
+
+OPTIMIZE_OUTPUT_FOR_C  = NO
+
+# Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java or
+# Python sources only. Doxygen will then generate output that is more tailored
+# for that language. For instance, namespaces will be presented as packages,
+# qualified scopes will look different, etc.
+# The default value is: NO.
+
+OPTIMIZE_OUTPUT_JAVA   = NO
+
+# Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran
+# sources. Doxygen will then generate output that is tailored for Fortran.
+# The default value is: NO.
+
+OPTIMIZE_FOR_FORTRAN   = NO
+
+# Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL
+# sources. Doxygen will then generate output that is tailored for VHDL.
+# The default value is: NO.
+
+OPTIMIZE_OUTPUT_VHDL   = NO
+
+# Set the OPTIMIZE_OUTPUT_SLICE tag to YES if your project consists of Slice
+# sources only. Doxygen will then generate output that is more tailored for that
+# language. For instance, namespaces will be presented as modules, types will be
+# separated into more groups, etc.
+# The default value is: NO.
+
+OPTIMIZE_OUTPUT_SLICE  = NO
+
+# Doxygen selects the parser to use depending on the extension of the files it
+# parses. With this tag you can assign which parser to use for a given
+# extension. Doxygen has a built-in mapping, but you can override or extend it
+# using this tag. The format is ext=language, where ext is a file extension, and
+# language is one of the parsers supported by doxygen: IDL, Java, JavaScript,
+# Csharp (C#), C, C++, Lex, D, PHP, md (Markdown), Objective-C, Python, Slice,
+# VHDL, Fortran (fixed format Fortran: FortranFixed, free formatted Fortran:
+# FortranFree, unknown formatted Fortran: Fortran. In the later case the parser
+# tries to guess whether the code is fixed or free formatted code, this is the
+# default for Fortran type files). For instance to make doxygen treat .inc files
+# as Fortran files (default is PHP), and .f files as C (default is Fortran),
+# use: inc=Fortran f=C.
+#
+# Note: For files without extension you can use no_extension as a placeholder.
+#
+# Note that for custom extensions you also need to set FILE_PATTERNS otherwise
+# the files are not read by doxygen. When specifying no_extension you should add
+# * to the FILE_PATTERNS.
+#
+# Note see also the list of default file extension mappings.
+
+EXTENSION_MAPPING      =
+
+# If the MARKDOWN_SUPPORT tag is enabled then doxygen pre-processes all comments
+# according to the Markdown format, which allows for more readable
+# documentation. See https://daringfireball.net/projects/markdown/ for details.
+# The output of markdown processing is further processed by doxygen, so you can
+# mix doxygen, HTML, and XML commands with Markdown formatting. Disable only in
+# case of backward compatibilities issues.
+# The default value is: YES.
+
+MARKDOWN_SUPPORT       = YES
+
+# When the TOC_INCLUDE_HEADINGS tag is set to a non-zero value, all headings up
+# to that level are automatically included in the table of contents, even if
+# they do not have an id attribute.
+# Note: This feature currently applies only to Markdown headings.
+# Minimum value: 0, maximum value: 99, default value: 5.
+# This tag requires that the tag MARKDOWN_SUPPORT is set to YES.
+
+TOC_INCLUDE_HEADINGS   = 5
+
+# The MARKDOWN_ID_STYLE tag can be used to specify the algorithm used to
+# generate identifiers for the Markdown headings. Note: Every identifier is
+# unique.
+# Possible values are: DOXYGEN use a fixed 'autotoc_md' string followed by a
+# sequence number starting at 0 and GITHUB use the lower case version of title
+# with any whitespace replaced by '-' and punctuation characters removed.
+# The default value is: DOXYGEN.
+# This tag requires that the tag MARKDOWN_SUPPORT is set to YES.
+
+MARKDOWN_ID_STYLE      = DOXYGEN
+
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by putting a % sign in front of the word or
+# globally by setting AUTOLINK_SUPPORT to NO.
+# The default value is: YES.
+
+AUTOLINK_SUPPORT       = YES
+
+# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want
+# to include (a tag file for) the STL sources as input, then you should set this
+# tag to YES in order to let doxygen match functions declarations and
+# definitions whose arguments contain STL classes (e.g. func(std::string);
+# versus func(std::string) {}). This also make the inheritance and collaboration
+# diagrams that involve STL classes more complete and accurate.
+# The default value is: NO.
+
+BUILTIN_STL_SUPPORT    = NO
+
+# If you use Microsoft's C++/CLI language, you should set this option to YES to
+# enable parsing support.
+# The default value is: NO.
+
+CPP_CLI_SUPPORT        = NO
+
+# Set the SIP_SUPPORT tag to YES if your project consists of sip (see:
+# https://www.riverbankcomputing.com/software/sip/intro) sources only. Doxygen
+# will parse them like normal C++ but will assume all classes use public instead
+# of private inheritance when no explicit protection keyword is present.
+# The default value is: NO.
+
+SIP_SUPPORT            = NO
+
+# For Microsoft's IDL there are propget and propput attributes to indicate
+# getter and setter methods for a property. Setting this option to YES will make
+# doxygen to replace the get and set methods by a property in the documentation.
+# This will only work if the methods are indeed getting or setting a simple
+# type. If this is not the case, or you want to show the methods anyway, you
+# should set this option to NO.
+# The default value is: YES.
+
+IDL_PROPERTY_SUPPORT   = YES
+
+# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC
+# tag is set to YES then doxygen will reuse the documentation of the first
+# member in the group (if any) for the other members of the group. By default
+# all members of a group must be documented explicitly.
+# The default value is: NO.
+
+DISTRIBUTE_GROUP_DOC   = NO
+
+# If one adds a struct or class to a group and this option is enabled, then also
+# any nested class or struct is added to the same group. By default this option
+# is disabled and one has to add nested compounds explicitly via \ingroup.
+# The default value is: NO.
+
+GROUP_NESTED_COMPOUNDS = NO
+
+# Set the SUBGROUPING tag to YES to allow class member groups of the same type
+# (for instance a group of public functions) to be put as a subgroup of that
+# type (e.g. under the Public Functions section). Set it to NO to prevent
+# subgrouping. Alternatively, this can be done per class using the
+# \nosubgrouping command.
+# The default value is: YES.
+
+SUBGROUPING            = YES
+
+# When the INLINE_GROUPED_CLASSES tag is set to YES, classes, structs and unions
+# are shown inside the group in which they are included (e.g. using \ingroup)
+# instead of on a separate page (for HTML and Man pages) or section (for LaTeX
+# and RTF).
+#
+# Note that this feature does not work in combination with
+# SEPARATE_MEMBER_PAGES.
+# The default value is: NO.
+
+INLINE_GROUPED_CLASSES = NO
+
+# When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and unions
+# with only public data fields or simple typedef fields will be shown inline in
+# the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO, structs, classes, and unions are shown on a separate page (for HTML and
+# Man pages) or section (for LaTeX and RTF).
+# The default value is: NO.
+
+INLINE_SIMPLE_STRUCTS  = NO
+
+# When TYPEDEF_HIDES_STRUCT tag is enabled, a typedef of a struct, union, or
+# enum is documented as struct, union, or enum with the name of the typedef. So
+# typedef struct TypeS {} TypeT, will appear in the documentation as a struct
+# with name TypeT. When disabled the typedef will appear as a member of a file,
+# namespace, or class. And the struct will be named TypeS. This can typically be
+# useful for C code in case the coding convention dictates that all compound
+# types are typedef'ed and only the typedef is referenced, never the tag name.
+# The default value is: NO.
+
+TYPEDEF_HIDES_STRUCT   = NO
+
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can be
+# an expensive process and often the same symbol appears multiple times in the
+# code, doxygen keeps a cache of pre-resolved symbols. If the cache is too small
+# doxygen will become slower. If the cache is too large, memory is wasted. The
+# cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range
+# is 0..9, the default is 0, corresponding to a cache size of 2^16=65536
+# symbols. At the end of a run doxygen will report the cache usage and suggest
+# the optimal cache size from a speed point of view.
+# Minimum value: 0, maximum value: 9, default value: 0.
+
+LOOKUP_CACHE_SIZE      = 0
+
+# The NUM_PROC_THREADS specifies the number of threads doxygen is allowed to use
+# during processing. When set to 0 doxygen will based this on the number of
+# cores available in the system. You can set it explicitly to a value larger
+# than 0 to get more control over the balance between CPU load and processing
+# speed. At this moment only the input processing can be done using multiple
+# threads. Since this is still an experimental feature the default is set to 1,
+# which effectively disables parallel processing. Please report any issues you
+# encounter. Generating dot graphs in parallel is controlled by the
+# DOT_NUM_THREADS setting.
+# Minimum value: 0, maximum value: 32, default value: 1.
+
+NUM_PROC_THREADS       = 1
+
+# If the TIMESTAMP tag is set different from NO then each generated page will
+# contain the date or date and time when the page was generated. Setting this to
+# NO can help when comparing the output of multiple runs.
+# Possible values are: YES, NO, DATETIME and DATE.
+# The default value is: NO.
+
+TIMESTAMP              = NO
+
+#---------------------------------------------------------------------------
+# Build related configuration options
+#---------------------------------------------------------------------------
+
+# If the EXTRACT_ALL tag is set to YES, doxygen will assume all entities in
+# documentation are documented, even if no documentation was available. Private
+# class members and static file members will be hidden unless the
+# EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES.
+# Note: This will also disable the warnings about undocumented members that are
+# normally produced when WARNINGS is set to YES.
+# The default value is: NO.
+
+EXTRACT_ALL            = YES
+
+# If the EXTRACT_PRIVATE tag is set to YES, all private members of a class will
+# be included in the documentation.
+# The default value is: NO.
+
+EXTRACT_PRIVATE        = YES
+
+# If the EXTRACT_PRIV_VIRTUAL tag is set to YES, documented private virtual
+# methods of a class will be included in the documentation.
+# The default value is: NO.
+
+EXTRACT_PRIV_VIRTUAL   = YES
+
+# If the EXTRACT_PACKAGE tag is set to YES, all members with package or internal
+# scope will be included in the documentation.
+# The default value is: NO.
+
+EXTRACT_PACKAGE        = YES
+
+# If the EXTRACT_STATIC tag is set to YES, all static members of a file will be
+# included in the documentation.
+# The default value is: NO.
+
+EXTRACT_STATIC         = YES
+
+# If the EXTRACT_LOCAL_CLASSES tag is set to YES, classes (and structs) defined
+# locally in source files will be included in the documentation. If set to NO,
+# only classes defined in header files are included. Does not have any effect
+# for Java sources.
+# The default value is: YES.
+
+EXTRACT_LOCAL_CLASSES  = YES
+
+# This flag is only useful for Objective-C code. If set to YES, local methods,
+# which are defined in the implementation section but not in the interface are
+# included in the documentation. If set to NO, only methods in the interface are
+# included.
+# The default value is: NO.
+
+EXTRACT_LOCAL_METHODS  = YES
+
+# If this flag is set to YES, the members of anonymous namespaces will be
+# extracted and appear in the documentation as a namespace called
+# 'anonymous_namespace{file}', where file will be replaced with the base name of
+# the file that contains the anonymous namespace. By default anonymous namespace
+# are hidden.
+# The default value is: NO.
+
+EXTRACT_ANON_NSPACES   = YES
+
+# If this flag is set to YES, the name of an unnamed parameter in a declaration
+# will be determined by the corresponding definition. By default unnamed
+# parameters remain unnamed in the output.
+# The default value is: YES.
+
+RESOLVE_UNNAMED_PARAMS = YES
+
+# If the HIDE_UNDOC_MEMBERS tag is set to YES, doxygen will hide all
+# undocumented members inside documented classes or files. If set to NO these
+# members will be included in the various overviews, but no documentation
+# section is generated. This option has no effect if EXTRACT_ALL is enabled.
+# The default value is: NO.
+
+HIDE_UNDOC_MEMBERS     = NO
+
+# If the HIDE_UNDOC_CLASSES tag is set to YES, doxygen will hide all
+# undocumented classes that are normally visible in the class hierarchy. If set
+# to NO, these classes will be included in the various overviews. This option
+# will also hide undocumented C++ concepts if enabled. This option has no effect
+# if EXTRACT_ALL is enabled.
+# The default value is: NO.
+
+HIDE_UNDOC_CLASSES     = NO
+
+# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, doxygen will hide all friend
+# declarations. If set to NO, these declarations will be included in the
+# documentation.
+# The default value is: NO.
+
+HIDE_FRIEND_COMPOUNDS  = NO
+
+# If the HIDE_IN_BODY_DOCS tag is set to YES, doxygen will hide any
+# documentation blocks found inside the body of a function. If set to NO, these
+# blocks will be appended to the function's detailed documentation block.
+# The default value is: NO.
+
+HIDE_IN_BODY_DOCS      = NO
+
+# The INTERNAL_DOCS tag determines if documentation that is typed after a
+# \internal command is included. If the tag is set to NO then the documentation
+# will be excluded. Set it to YES to include the internal documentation.
+# The default value is: NO.
+
+INTERNAL_DOCS          = NO
+
+# With the correct setting of option CASE_SENSE_NAMES doxygen will better be
+# able to match the capabilities of the underlying filesystem. In case the
+# filesystem is case sensitive (i.e. it supports files in the same directory
+# whose names only differ in casing), the option must be set to YES to properly
+# deal with such files in case they appear in the input. For filesystems that
+# are not case sensitive the option should be set to NO to properly deal with
+# output files written for symbols that only differ in casing, such as for two
+# classes, one named CLASS and the other named Class, and to also support
+# references to files without having to specify the exact matching casing. On
+# Windows (including Cygwin) and MacOS, users should typically set this option
+# to NO, whereas on Linux or other Unix flavors it should typically be set to
+# YES.
+# Possible values are: SYSTEM, NO and YES.
+# The default value is: SYSTEM.
+
+CASE_SENSE_NAMES       = SYSTEM
+
+# If the HIDE_SCOPE_NAMES tag is set to NO then doxygen will show members with
+# their full class and namespace scopes in the documentation. If set to YES, the
+# scope will be hidden.
+# The default value is: NO.
+
+HIDE_SCOPE_NAMES       = NO
+
+# If the HIDE_COMPOUND_REFERENCE tag is set to NO (default) then doxygen will
+# append additional text to a page's title, such as Class Reference. If set to
+# YES the compound reference will be hidden.
+# The default value is: NO.
+
+HIDE_COMPOUND_REFERENCE= NO
+
+# If the SHOW_HEADERFILE tag is set to YES then the documentation for a class
+# will show which file needs to be included to use the class.
+# The default value is: YES.
+
+SHOW_HEADERFILE        = YES
+
+# If the SHOW_INCLUDE_FILES tag is set to YES then doxygen will put a list of
+# the files that are included by a file in the documentation of that file.
+# The default value is: YES.
+
+SHOW_INCLUDE_FILES     = YES
+
+# If the SHOW_GROUPED_MEMB_INC tag is set to YES then Doxygen will add for each
+# grouped member an include statement to the documentation, telling the reader
+# which file to include in order to use the member.
+# The default value is: NO.
+
+SHOW_GROUPED_MEMB_INC  = NO
+
+# If the FORCE_LOCAL_INCLUDES tag is set to YES then doxygen will list include
+# files with double quotes in the documentation rather than with sharp brackets.
+# The default value is: NO.
+
+FORCE_LOCAL_INCLUDES   = NO
+
+# If the INLINE_INFO tag is set to YES then a tag [inline] is inserted in the
+# documentation for inline members.
+# The default value is: YES.
+
+INLINE_INFO            = YES
+
+# If the SORT_MEMBER_DOCS tag is set to YES then doxygen will sort the
+# (detailed) documentation of file and class members alphabetically by member
+# name. If set to NO, the members will appear in declaration order.
+# The default value is: YES.
+
+SORT_MEMBER_DOCS       = YES
+
+# If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the brief
+# descriptions of file, namespace and class members alphabetically by member
+# name. If set to NO, the members will appear in declaration order. Note that
+# this will also influence the order of the classes in the class list.
+# The default value is: NO.
+
+SORT_BRIEF_DOCS        = NO
+
+# If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen will sort the
+# (brief and detailed) documentation of class members so that constructors and
+# destructors are listed first. If set to NO the constructors will appear in the
+# respective orders defined by SORT_BRIEF_DOCS and SORT_MEMBER_DOCS.
+# Note: If SORT_BRIEF_DOCS is set to NO this option is ignored for sorting brief
+# member documentation.
+# Note: If SORT_MEMBER_DOCS is set to NO this option is ignored for sorting
+# detailed member documentation.
+# The default value is: NO.
+
+SORT_MEMBERS_CTORS_1ST = NO
+
+# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the hierarchy
+# of group names into alphabetical order. If set to NO the group names will
+# appear in their defined order.
+# The default value is: NO.
+
+SORT_GROUP_NAMES       = NO
+
+# If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be sorted by
+# fully-qualified names, including namespaces. If set to NO, the class list will
+# be sorted only by class name, not including the namespace part.
+# Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES.
+# Note: This option applies only to the class list, not to the alphabetical
+# list.
+# The default value is: NO.
+
+SORT_BY_SCOPE_NAME     = NO
+
+# If the STRICT_PROTO_MATCHING option is enabled and doxygen fails to do proper
+# type resolution of all parameters of a function it will reject a match between
+# the prototype and the implementation of a member function even if there is
+# only one candidate or it is obvious which candidate to choose by doing a
+# simple string match. By disabling STRICT_PROTO_MATCHING doxygen will still
+# accept a match between prototype and implementation in such cases.
+# The default value is: NO.
+
+STRICT_PROTO_MATCHING  = NO
+
+# The GENERATE_TODOLIST tag can be used to enable (YES) or disable (NO) the todo
+# list. This list is created by putting \todo commands in the documentation.
+# The default value is: YES.
+
+GENERATE_TODOLIST      = YES
+
+# The GENERATE_TESTLIST tag can be used to enable (YES) or disable (NO) the test
+# list. This list is created by putting \test commands in the documentation.
+# The default value is: YES.
+
+GENERATE_TESTLIST      = YES
+
+# The GENERATE_BUGLIST tag can be used to enable (YES) or disable (NO) the bug
+# list. This list is created by putting \bug commands in the documentation.
+# The default value is: YES.
+
+GENERATE_BUGLIST       = YES
+
+# The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or disable (NO)
+# the deprecated list. This list is created by putting \deprecated commands in
+# the documentation.
+# The default value is: YES.
+
+GENERATE_DEPRECATEDLIST= YES
+
+# The ENABLED_SECTIONS tag can be used to enable conditional documentation
+# sections, marked by \if <section_label> ... \endif and \cond <section_label>
+# ... \endcond blocks.
+
+ENABLED_SECTIONS       =
+
+# The MAX_INITIALIZER_LINES tag determines the maximum number of lines that the
+# initial value of a variable or macro / define can have for it to appear in the
+# documentation. If the initializer consists of more lines than specified here
+# it will be hidden. Use a value of 0 to hide initializers completely. The
+# appearance of the value of individual variables and macros / defines can be
+# controlled using \showinitializer or \hideinitializer command in the
+# documentation regardless of this setting.
+# Minimum value: 0, maximum value: 10000, default value: 30.
+
+MAX_INITIALIZER_LINES  = 30
+
+# Set the SHOW_USED_FILES tag to NO to disable the list of files generated at
+# the bottom of the documentation of classes and structs. If set to YES, the
+# list will mention the files that were used to generate the documentation.
+# The default value is: YES.
+
+SHOW_USED_FILES        = YES
+
+# Set the SHOW_FILES tag to NO to disable the generation of the Files page. This
+# will remove the Files entry from the Quick Index and from the Folder Tree View
+# (if specified).
+# The default value is: YES.
+
+SHOW_FILES             = YES
+
+# Set the SHOW_NAMESPACES tag to NO to disable the generation of the Namespaces
+# page. This will remove the Namespaces entry from the Quick Index and from the
+# Folder Tree View (if specified).
+# The default value is: YES.
+
+SHOW_NAMESPACES        = YES
+
+# The FILE_VERSION_FILTER tag can be used to specify a program or script that
+# doxygen should invoke to get the current version for each file (typically from
+# the version control system). Doxygen will invoke the program by executing (via
+# popen()) the command command input-file, where command is the value of the
+# FILE_VERSION_FILTER tag, and input-file is the name of an input file provided
+# by doxygen. Whatever the program writes to standard output is used as the file
+# version. For an example see the documentation.
+
+FILE_VERSION_FILTER    =
+
+# The LAYOUT_FILE tag can be used to specify a layout file which will be parsed
+# by doxygen. The layout file controls the global structure of the generated
+# output files in an output format independent way. To create the layout file
+# that represents doxygen's defaults, run doxygen with the -l option. You can
+# optionally specify a file name after the option, if omitted DoxygenLayout.xml
+# will be used as the name of the layout file. See also section "Changing the
+# layout of pages" for information.
+#
+# Note that if you run doxygen from a directory containing a file called
+# DoxygenLayout.xml, doxygen will parse it automatically even if the LAYOUT_FILE
+# tag is left empty.
+
+LAYOUT_FILE            =
+
+# The CITE_BIB_FILES tag can be used to specify one or more bib files containing
+# the reference definitions. This must be a list of .bib files. The .bib
+# extension is automatically appended if omitted. This requires the bibtex tool
+# to be installed. See also https://en.wikipedia.org/wiki/BibTeX for more info.
+# For LaTeX the style of the bibliography can be controlled using
+# LATEX_BIB_STYLE. To use this feature you need bibtex and perl available in the
+# search path. See also \cite for info how to create references.
+
+CITE_BIB_FILES         = literature.bib
+
+#---------------------------------------------------------------------------
+# Configuration options related to warning and progress messages
+#---------------------------------------------------------------------------
+
+# The QUIET tag can be used to turn on/off the messages that are generated to
+# standard output by doxygen. If QUIET is set to YES this implies that the
+# messages are off.
+# The default value is: NO.
+
+QUIET                  = NO
+
+# The WARNINGS tag can be used to turn on/off the warning messages that are
+# generated to standard error (stderr) by doxygen. If WARNINGS is set to YES
+# this implies that the warnings are on.
+#
+# Tip: Turn warnings on while writing the documentation.
+# The default value is: YES.
+
+WARNINGS               = YES
+
+# If the WARN_IF_UNDOCUMENTED tag is set to YES then doxygen will generate
+# warnings for undocumented members. If EXTRACT_ALL is set to YES then this flag
+# will automatically be disabled.
+# The default value is: YES.
+
+WARN_IF_UNDOCUMENTED   = YES
+
+# If the WARN_IF_DOC_ERROR tag is set to YES, doxygen will generate warnings for
+# potential errors in the documentation, such as documenting some parameters in
+# a documented function twice, or documenting parameters that don't exist or
+# using markup commands wrongly.
+# The default value is: YES.
+
+WARN_IF_DOC_ERROR      = YES
+
+# If WARN_IF_INCOMPLETE_DOC is set to YES, doxygen will warn about incomplete
+# function parameter documentation. If set to NO, doxygen will accept that some
+# parameters have no documentation without warning.
+# The default value is: YES.
+
+WARN_IF_INCOMPLETE_DOC = YES
+
+# This WARN_NO_PARAMDOC option can be enabled to get warnings for functions that
+# are documented, but have no documentation for their parameters or return
+# value. If set to NO, doxygen will only warn about wrong parameter
+# documentation, but not about the absence of documentation. If EXTRACT_ALL is
+# set to YES then this flag will automatically be disabled. See also
+# WARN_IF_INCOMPLETE_DOC
+# The default value is: NO.
+
+WARN_NO_PARAMDOC       = NO
+
+# If WARN_IF_UNDOC_ENUM_VAL option is set to YES, doxygen will warn about
+# undocumented enumeration values. If set to NO, doxygen will accept
+# undocumented enumeration values. If EXTRACT_ALL is set to YES then this flag
+# will automatically be disabled.
+# The default value is: NO.
+
+WARN_IF_UNDOC_ENUM_VAL = NO
+
+# If the WARN_AS_ERROR tag is set to YES then doxygen will immediately stop when
+# a warning is encountered. If the WARN_AS_ERROR tag is set to FAIL_ON_WARNINGS
+# then doxygen will continue running as if WARN_AS_ERROR tag is set to NO, but
+# at the end of the doxygen process doxygen will return with a non-zero status.
+# If the WARN_AS_ERROR tag is set to FAIL_ON_WARNINGS_PRINT then doxygen behaves
+# like FAIL_ON_WARNINGS but in case no WARN_LOGFILE is defined doxygen will not
+# write the warning messages in between other messages but write them at the end
+# of a run, in case a WARN_LOGFILE is defined the warning messages will be
+# besides being in the defined file also be shown at the end of a run, unless
+# the WARN_LOGFILE is defined as - i.e. standard output (stdout) in that case
+# the behavior will remain as with the setting FAIL_ON_WARNINGS.
+# Possible values are: NO, YES, FAIL_ON_WARNINGS and FAIL_ON_WARNINGS_PRINT.
+# The default value is: NO.
+
+WARN_AS_ERROR          = NO
+
+# The WARN_FORMAT tag determines the format of the warning messages that doxygen
+# can produce. The string should contain the $file, $line, and $text tags, which
+# will be replaced by the file and line number from which the warning originated
+# and the warning text. Optionally the format may contain $version, which will
+# be replaced by the version of the file (if it could be obtained via
+# FILE_VERSION_FILTER)
+# See also: WARN_LINE_FORMAT
+# The default value is: $file:$line: $text.
+
+WARN_FORMAT            = "$file:$line: $text"
+
+# In the $text part of the WARN_FORMAT command it is possible that a reference
+# to a more specific place is given. To make it easier to jump to this place
+# (outside of doxygen) the user can define a custom "cut" / "paste" string.
+# Example:
+# WARN_LINE_FORMAT = "'vi $file +$line'"
+# See also: WARN_FORMAT
+# The default value is: at line $line of file $file.
+
+WARN_LINE_FORMAT       = "at line $line of file $file"
+
+# The WARN_LOGFILE tag can be used to specify a file to which warning and error
+# messages should be written. If left blank the output is written to standard
+# error (stderr). In case the file specified cannot be opened for writing the
+# warning and error messages are written to standard error. When as file - is
+# specified the warning and error messages are written to standard output
+# (stdout).
+
+WARN_LOGFILE           =
+
+#---------------------------------------------------------------------------
+# Configuration options related to the input files
+#---------------------------------------------------------------------------
+
+# The INPUT tag is used to specify the files and/or directories that contain
+# documented source files. You may enter file names like myfile.cpp or
+# directories like /usr/src/myproject. Separate the files or directories with
+# spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
+# Note: If this tag is empty the current directory is searched.
+
+INPUT                  = @SOURCE_DIR@
+
+# This tag can be used to specify the character encoding of the source files
+# that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
+# libiconv (or the iconv built into libc) for the transcoding. See the libiconv
+# documentation (see:
+# https://www.gnu.org/software/libiconv/) for the list of possible encodings.
+# See also: INPUT_FILE_ENCODING
+# The default value is: UTF-8.
+
+INPUT_ENCODING         = UTF-8
+
+# This tag can be used to specify the character encoding of the source files
+# that doxygen parses The INPUT_FILE_ENCODING tag can be used to specify
+# character encoding on a per file pattern basis. Doxygen will compare the file
+# name with each pattern and apply the encoding instead of the default
+# INPUT_ENCODING) if there is a match. The character encodings are a list of the
+# form: pattern=encoding (like *.php=ISO-8859-1). See cfg_input_encoding
+# "INPUT_ENCODING" for further information on supported encodings.
+
+INPUT_FILE_ENCODING    =
+
+# If the value of the INPUT tag contains directories, you can use the
+# FILE_PATTERNS tag to specify one or more wildcard patterns (like *.cpp and
+# *.h) to filter out the source-files in the directories.
+#
+# Note that for custom extensions or not directly supported extensions you also
+# need to set EXTENSION_MAPPING for the extension otherwise the files are not
+# read by doxygen.
+#
+# Note the list of default checked file patterns might differ from the list of
+# default file extension mappings.
+#
+# If left blank the following patterns are tested:*.c, *.cc, *.cxx, *.cxxm,
+# *.cpp, *.cppm, *.c++, *.c++m, *.java, *.ii, *.ixx, *.ipp, *.i++, *.inl, *.idl,
+# *.ddl, *.odl, *.h, *.hh, *.hxx, *.hpp, *.h++, *.ixx, *.l, *.cs, *.d, *.php,
+# *.php4, *.php5, *.phtml, *.inc, *.m, *.markdown, *.md, *.mm, *.dox (to be
+# provided as doxygen C comment), *.py, *.pyw, *.f90, *.f95, *.f03, *.f08,
+# *.f18, *.f, *.for, *.vhd, *.vhdl, *.ucf, *.qsf and *.ice.
+
+FILE_PATTERNS          = *.c \
+                         *.cc \
+                         *.cxx \
+                         *.cxxm \
+                         *.cpp \
+                         *.cppm \
+                         *.c++ \
+                         *.c++m \
+                         *.java \
+                         *.ii \
+                         *.ixx \
+                         *.ipp \
+                         *.i++ \
+                         *.inl \
+                         *.idl \
+                         *.ddl \
+                         *.odl \
+                         *.h \
+                         *.hh \
+                         *.hxx \
+                         *.hpp \
+                         *.h++ \
+                         *.ixx \
+                         *.l \
+                         *.cs \
+                         *.d \
+                         *.php \
+                         *.php4 \
+                         *.php5 \
+                         *.phtml \
+                         *.inc \
+                         *.m \
+                         *.markdown \
+                         *.md \
+                         *.mm \
+                         *.dox \
+                         *.py \
+                         *.pyw \
+                         *.f90 \
+                         *.f95 \
+                         *.f03 \
+                         *.f08 \
+                         *.f18 \
+                         *.f \
+                         *.for \
+                         *.vhd \
+                         *.vhdl \
+                         *.ucf \
+                         *.qsf \
+                         *.ice
+
+# The RECURSIVE tag can be used to specify whether or not subdirectories should
+# be searched for input files as well.
+# The default value is: NO.
+
+RECURSIVE              = YES
+
+# The EXCLUDE tag can be used to specify files and/or directories that should be
+# excluded from the INPUT source files. This way you can easily exclude a
+# subdirectory from a directory tree whose root is specified with the INPUT tag.
+#
+# Note that relative paths are relative to the directory from which doxygen is
+# run.
+
+EXCLUDE                =
+
+# The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
+# directories that are symbolic links (a Unix file system feature) are excluded
+# from the input.
+# The default value is: NO.
+
+EXCLUDE_SYMLINKS       = NO
+
+# If the value of the INPUT tag contains directories, you can use the
+# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude
+# certain files from those directories.
+#
+# Note that the wildcards are matched against the file with absolute path, so to
+# exclude all test directories for example use the pattern */test/*
+
+EXCLUDE_PATTERNS       =
+
+# The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
+# (namespaces, classes, functions, etc.) that should be excluded from the
+# output. The symbol name can be a fully qualified name, a word, or if the
+# wildcard * is used, a substring. Examples: ANamespace, AClass,
+# ANamespace::AClass, ANamespace::*Test
+
+EXCLUDE_SYMBOLS        =
+
+# The EXAMPLE_PATH tag can be used to specify one or more files or directories
+# that contain example code fragments that are included (see the \include
+# command).
+
+EXAMPLE_PATH           =
+
+# If the value of the EXAMPLE_PATH tag contains directories, you can use the
+# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp and
+# *.h) to filter out the source-files in the directories. If left blank all
+# files are included.
+
+EXAMPLE_PATTERNS       = *
+
+# If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be
+# searched for input files to be used with the \include or \dontinclude commands
+# irrespective of the value of the RECURSIVE tag.
+# The default value is: NO.
+
+EXAMPLE_RECURSIVE      = NO
+
+# The IMAGE_PATH tag can be used to specify one or more files or directories
+# that contain images that are to be included in the documentation (see the
+# \image command).
+
+IMAGE_PATH             = ./img/
+
+# The INPUT_FILTER tag can be used to specify a program that doxygen should
+# invoke to filter for each input file. Doxygen will invoke the filter program
+# by executing (via popen()) the command:
+#
+# <filter> <input-file>
+#
+# where <filter> is the value of the INPUT_FILTER tag, and <input-file> is the
+# name of an input file. Doxygen will then use the output that the filter
+# program writes to standard output. If FILTER_PATTERNS is specified, this tag
+# will be ignored.
+#
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
+#
+# Note that doxygen will use the data processed and written to standard output
+# for further processing, therefore nothing else, like debug statements or used
+# commands (so in case of a Windows batch file always use @echo OFF), should be
+# written to standard output.
+#
+# Note that for custom extensions or not directly supported extensions you also
+# need to set EXTENSION_MAPPING for the extension otherwise the files are not
+# properly processed by doxygen.
+
+INPUT_FILTER           =
+
+# The FILTER_PATTERNS tag can be used to specify filters on a per file pattern
+# basis. Doxygen will compare the file name with each pattern and apply the
+# filter if there is a match. The filters are a list of the form: pattern=filter
+# (like *.cpp=my_cpp_filter). See INPUT_FILTER for further information on how
+# filters are used. If the FILTER_PATTERNS tag is empty or if none of the
+# patterns match the file name, INPUT_FILTER is applied.
+#
+# Note that for custom extensions or not directly supported extensions you also
+# need to set EXTENSION_MAPPING for the extension otherwise the files are not
+# properly processed by doxygen.
+
+FILTER_PATTERNS        =
+
+# If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using
+# INPUT_FILTER) will also be used to filter the input files that are used for
+# producing the source files to browse (i.e. when SOURCE_BROWSER is set to YES).
+# The default value is: NO.
+
+FILTER_SOURCE_FILES    = NO
+
+# The FILTER_SOURCE_PATTERNS tag can be used to specify source filters per file
+# pattern. A pattern will override the setting for FILTER_PATTERN (if any) and
+# it is also possible to disable source filtering for a specific pattern using
+# *.ext= (so without naming a filter).
+# This tag requires that the tag FILTER_SOURCE_FILES is set to YES.
+
+FILTER_SOURCE_PATTERNS =
+
+# If the USE_MDFILE_AS_MAINPAGE tag refers to the name of a markdown file that
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want to reuse the introduction page also for the doxygen output.
+
+USE_MDFILE_AS_MAINPAGE =
+
+# The Fortran standard specifies that for fixed formatted Fortran code all
+# characters from position 72 are to be considered as comment. A common
+# extension is to allow longer lines before the automatic comment starts. The
+# setting FORTRAN_COMMENT_AFTER will also make it possible that longer lines can
+# be processed before the automatic comment starts.
+# Minimum value: 7, maximum value: 10000, default value: 72.
+
+FORTRAN_COMMENT_AFTER  = 72
+
+#---------------------------------------------------------------------------
+# Configuration options related to source browsing
+#---------------------------------------------------------------------------
+
+# If the SOURCE_BROWSER tag is set to YES then a list of source files will be
+# generated. Documented entities will be cross-referenced with these sources.
+#
+# Note: To get rid of all source code in the generated output, make sure that
+# also VERBATIM_HEADERS is set to NO.
+# The default value is: NO.
+
+SOURCE_BROWSER         = NO
+
+# Setting the INLINE_SOURCES tag to YES will include the body of functions,
+# classes and enums directly into the documentation.
+# The default value is: NO.
+
+INLINE_SOURCES         = NO
+
+# Setting the STRIP_CODE_COMMENTS tag to YES will instruct doxygen to hide any
+# special comment blocks from generated source code fragments. Normal C, C++ and
+# Fortran comments will always remain visible.
+# The default value is: YES.
+
+STRIP_CODE_COMMENTS    = YES
+
+# If the REFERENCED_BY_RELATION tag is set to YES then for each documented
+# entity all documented functions referencing it will be listed.
+# The default value is: NO.
+
+REFERENCED_BY_RELATION = NO
+
+# If the REFERENCES_RELATION tag is set to YES then for each documented function
+# all documented entities called/used by that function will be listed.
+# The default value is: NO.
+
+REFERENCES_RELATION    = NO
+
+# If the REFERENCES_LINK_SOURCE tag is set to YES and SOURCE_BROWSER tag is set
+# to YES then the hyperlinks from functions in REFERENCES_RELATION and
+# REFERENCED_BY_RELATION lists will link to the source code. Otherwise they will
+# link to the documentation.
+# The default value is: YES.
+
+REFERENCES_LINK_SOURCE = YES
+
+# If SOURCE_TOOLTIPS is enabled (the default) then hovering a hyperlink in the
+# source code will show a tooltip with additional information such as prototype,
+# brief description and links to the definition and documentation. Since this
+# will make the HTML file larger and loading of large files a bit slower, you
+# can opt to disable this feature.
+# The default value is: YES.
+# This tag requires that the tag SOURCE_BROWSER is set to YES.
+
+SOURCE_TOOLTIPS        = YES
+
+# If the USE_HTAGS tag is set to YES then the references to source code will
+# point to the HTML generated by the htags(1) tool instead of doxygen built-in
+# source browser. The htags tool is part of GNU's global source tagging system
+# (see https://www.gnu.org/software/global/global.html). You will need version
+# 4.8.6 or higher.
+#
+# To use it do the following:
+# - Install the latest version of global
+# - Enable SOURCE_BROWSER and USE_HTAGS in the configuration file
+# - Make sure the INPUT points to the root of the source tree
+# - Run doxygen as normal
+#
+# Doxygen will invoke htags (and that will in turn invoke gtags), so these
+# tools must be available from the command line (i.e. in the search path).
+#
+# The result: instead of the source browser generated by doxygen, the links to
+# source code will now point to the output of htags.
+# The default value is: NO.
+# This tag requires that the tag SOURCE_BROWSER is set to YES.
+
+USE_HTAGS              = NO
+
+# If the VERBATIM_HEADERS tag is set the YES then doxygen will generate a
+# verbatim copy of the header file for each class for which an include is
+# specified. Set to NO to disable this.
+# See also: Section \class.
+# The default value is: YES.
+
+VERBATIM_HEADERS       = YES
+
+# If the CLANG_ASSISTED_PARSING tag is set to YES then doxygen will use the
+# clang parser (see:
+# http://clang.llvm.org/) for more accurate parsing at the cost of reduced
+# performance. This can be particularly helpful with template rich C++ code for
+# which doxygen's built-in parser lacks the necessary type information.
+# Note: The availability of this option depends on whether or not doxygen was
+# generated with the -Duse_libclang=ON option for CMake.
+# The default value is: NO.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If the CLANG_ASSISTED_PARSING tag is set to YES and the CLANG_ADD_INC_PATHS
+# tag is set to YES then doxygen will add the directory of each input to the
+# include path.
+# The default value is: YES.
+# This tag requires that the tag CLANG_ASSISTED_PARSING is set to YES.
+
+CLANG_ADD_INC_PATHS    = YES
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified with INPUT and INCLUDE_PATH.
+# This tag requires that the tag CLANG_ASSISTED_PARSING is set to YES.
+
+CLANG_OPTIONS          =
+
+# If clang assisted parsing is enabled you can provide the clang parser with the
+# path to the directory containing a file called compile_commands.json. This
+# file is the compilation database (see:
+# http://clang.llvm.org/docs/HowToSetupToolingForLLVM.html) containing the
+# options used when the source files were built. This is equivalent to
+# specifying the -p option to a clang tool, such as clang-check. These options
+# will then be passed to the parser. Any options specified with CLANG_OPTIONS
+# will be added as well.
+# Note: The availability of this option depends on whether or not doxygen was
+# generated with the -Duse_libclang=ON option for CMake.
+
+CLANG_DATABASE_PATH    =
+#---------------------------------------------------------------------------
+# Configuration options related to the alphabetical class index
+#---------------------------------------------------------------------------
+
+# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index of all
+# compounds will be generated. Enable this if the project contains a lot of
+# classes, structs, unions or interfaces.
+# The default value is: YES.
+
+ALPHABETICAL_INDEX     = YES
+
+# The IGNORE_PREFIX tag can be used to specify a prefix (or a list of prefixes)
+# that should be ignored while generating the index headers. The IGNORE_PREFIX
+# tag works for classes, function and member names. The entity will be placed in
+# the alphabetical list under the first letter of the entity name that remains
+# after removing the prefix.
+# This tag requires that the tag ALPHABETICAL_INDEX is set to YES.
+
+IGNORE_PREFIX          =
+
+#---------------------------------------------------------------------------
+# Configuration options related to the HTML output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_HTML tag is set to YES, doxygen will generate HTML output
+# The default value is: YES.
+
+GENERATE_HTML          = YES
+
+# The HTML_OUTPUT tag is used to specify where the HTML docs will be put. If a
+# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
+# it.
+# The default directory is: html.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_OUTPUT            = ecological_assessment
+
+# The HTML_FILE_EXTENSION tag can be used to specify the file extension for each
+# generated HTML page (for example: .htm, .php, .asp).
+# The default value is: .html.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_FILE_EXTENSION    = .html
+
+# The HTML_HEADER tag can be used to specify a user-defined HTML header file for
+# each generated HTML page. If the tag is left blank doxygen will generate a
+# standard header.
+#
+# To get valid HTML the header file that includes any scripts and style sheets
+# that doxygen needs, which is dependent on the configuration options used (e.g.
+# the setting GENERATE_TREEVIEW). It is highly recommended to start with a
+# default header using
+# doxygen -w html new_header.html new_footer.html new_stylesheet.css
+# YourConfigFile
+# and then modify the file new_header.html. See also section "Doxygen usage"
+# for information on how to generate the default header that doxygen normally
+# uses.
+# Note: The header is subject to change so you typically have to regenerate the
+# default header when upgrading to a newer version of doxygen. For a description
+# of the possible markers and block names see the documentation.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_HEADER            = header.html
+
+# The HTML_FOOTER tag can be used to specify a user-defined HTML footer for each
+# generated HTML page. If the tag is left blank doxygen will generate a standard
+# footer. See HTML_HEADER for more information on how to generate a default
+# footer and what special commands can be used inside the footer. See also
+# section "Doxygen usage" for information on how to generate the default footer
+# that doxygen normally uses.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_FOOTER            =
+
+# The HTML_STYLESHEET tag can be used to specify a user-defined cascading style
+# sheet that is used by each HTML page. It can be used to fine-tune the look of
+# the HTML output. If left blank doxygen will generate a default style sheet.
+# See also section "Doxygen usage" for information on how to generate the style
+# sheet that doxygen normally uses.
+# Note: It is recommended to use HTML_EXTRA_STYLESHEET instead of this tag, as
+# it is more robust and this tag (HTML_STYLESHEET) will in the future become
+# obsolete.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_STYLESHEET        =
+
+# The HTML_EXTRA_STYLESHEET tag can be used to specify additional user-defined
+# cascading style sheets that are included after the standard style sheets
+# created by doxygen. Using this option one can overrule certain style aspects.
+# This is preferred over using HTML_STYLESHEET since it does not replace the
+# standard style sheet and is therefore more robust against future updates.
+# Doxygen will copy the style sheet files to the output directory.
+# Note: The order of the extra style sheet files is of importance (e.g. the last
+# style sheet in the list overrules the setting of the previous ones in the
+# list).
+# Note: Since the styling of scrollbars can currently not be overruled in
+# Webkit/Chromium, the styling will be left out of the default doxygen.css if
+# one or more extra stylesheets have been specified. So if scrollbar
+# customization is desired it has to be added explicitly. For an example see the
+# documentation.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_EXTRA_STYLESHEET  = ../../libs/extern/doxygen-awesome-css/doxygen-awesome.css
+
+# The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
+# other source files which should be copied to the HTML output directory. Note
+# that these files will be copied to the base HTML output directory. Use the
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# files. In the HTML_STYLESHEET file, use the file name only. Also note that the
+# files will be copied as-is; there are no commands or markers available.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_EXTRA_FILES       = ../../libs/extern/doxygen-awesome-css/doxygen-awesome-darkmode-toggle.js\
+    ../../libs/extern/doxygen-awesome-css/doxygen-awesome-tabs.js\
+    ../../libs/extern/doxygen-awesome-css/doxygen-awesome-fragment-copy-button.js
+
+# The HTML_COLORSTYLE tag can be used to specify if the generated HTML output
+# should be rendered with a dark or light theme.
+# Possible values are: LIGHT always generate light mode output, DARK always
+# generate dark mode output, AUTO_LIGHT automatically set the mode according to
+# the user preference, use light mode if no preference is set (the default),
+# AUTO_DARK automatically set the mode according to the user preference, use
+# dark mode if no preference is set and TOGGLE allow to user to switch between
+# light and dark mode via a button.
+# The default value is: AUTO_LIGHT.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_COLORSTYLE        = LIGHT
+
+# The HTML_COLORSTYLE_HUE tag controls the color of the HTML output. Doxygen
+# will adjust the colors in the style sheet and background images according to
+# this color. Hue is specified as an angle on a color-wheel, see
+# https://en.wikipedia.org/wiki/Hue for more information. For instance the value
+# 0 represents red, 60 is yellow, 120 is green, 180 is cyan, 240 is blue, 300
+# purple, and 360 is red again.
+# Minimum value: 0, maximum value: 359, default value: 220.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_COLORSTYLE_HUE    = 220
+
+# The HTML_COLORSTYLE_SAT tag controls the purity (or saturation) of the colors
+# in the HTML output. For a value of 0 the output will use gray-scales only. A
+# value of 255 will produce the most vivid colors.
+# Minimum value: 0, maximum value: 255, default value: 100.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_COLORSTYLE_SAT    = 100
+
+# The HTML_COLORSTYLE_GAMMA tag controls the gamma correction applied to the
+# luminance component of the colors in the HTML output. Values below 100
+# gradually make the output lighter, whereas values above 100 make the output
+# darker. The value divided by 100 is the actual gamma applied, so 80 represents
+# a gamma of 0.8, The value 220 represents a gamma of 2.2, and 100 does not
+# change the gamma.
+# Minimum value: 40, maximum value: 240, default value: 80.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_COLORSTYLE_GAMMA  = 80
+
+# If the HTML_DYNAMIC_MENUS tag is set to YES then the generated HTML
+# documentation will contain a main index with vertical navigation menus that
+# are dynamically created via JavaScript. If disabled, the navigation index will
+# consists of multiple levels of tabs that are statically embedded in every HTML
+# page. Disable this option to support browsers that do not have JavaScript,
+# like the Qt help browser.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_DYNAMIC_MENUS     = YES
+
+# If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML
+# documentation will contain sections that can be hidden and shown after the
+# page has loaded.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_DYNAMIC_SECTIONS  = NO
+
+# If the HTML_CODE_FOLDING tag is set to YES then classes and functions can be
+# dynamically folded and expanded in the generated HTML source code.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_CODE_FOLDING      = YES
+
+# With HTML_INDEX_NUM_ENTRIES one can control the preferred number of entries
+# shown in the various tree structured indices initially; the user can expand
+# and collapse entries dynamically later on. Doxygen will expand the tree to
+# such a level that at most the specified number of entries are visible (unless
+# a fully collapsed tree already exceeds this amount). So setting the number of
+# entries 1 will produce a full collapsed tree by default. 0 is a special value
+# representing an infinite number of entries and will result in a full expanded
+# tree by default.
+# Minimum value: 0, maximum value: 9999, default value: 100.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_INDEX_NUM_ENTRIES = 100
+
+# If the GENERATE_DOCSET tag is set to YES, additional index files will be
+# generated that can be used as input for Apple's Xcode 3 integrated development
+# environment (see:
+# https://developer.apple.com/xcode/), introduced with OSX 10.5 (Leopard). To
+# create a documentation set, doxygen will generate a Makefile in the HTML
+# output directory. Running make will produce the docset in that directory and
+# running make install will install the docset in
+# ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find it at
+# startup. See https://developer.apple.com/library/archive/featuredarticles/Doxy
+# genXcode/_index.html for more information.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+GENERATE_DOCSET        = NO
+
+# This tag determines the name of the docset feed. A documentation feed provides
+# an umbrella under which multiple documentation sets from a single provider
+# (such as a company or product suite) can be grouped.
+# The default value is: Doxygen generated docs.
+# This tag requires that the tag GENERATE_DOCSET is set to YES.
+
+DOCSET_FEEDNAME        = "Doxygen generated docs"
+
+# This tag determines the URL of the docset feed. A documentation feed provides
+# an umbrella under which multiple documentation sets from a single provider
+# (such as a company or product suite) can be grouped.
+# This tag requires that the tag GENERATE_DOCSET is set to YES.
+
+DOCSET_FEEDURL         =
+
+# This tag specifies a string that should uniquely identify the documentation
+# set bundle. This should be a reverse domain-name style string, e.g.
+# com.mycompany.MyDocSet. Doxygen will append .docset to the name.
+# The default value is: org.doxygen.Project.
+# This tag requires that the tag GENERATE_DOCSET is set to YES.
+
+DOCSET_BUNDLE_ID       = org.doxygen.Project
+
+# The DOCSET_PUBLISHER_ID tag specifies a string that should uniquely identify
+# the documentation publisher. This should be a reverse domain-name style
+# string, e.g. com.mycompany.MyDocSet.documentation.
+# The default value is: org.doxygen.Publisher.
+# This tag requires that the tag GENERATE_DOCSET is set to YES.
+
+DOCSET_PUBLISHER_ID    = org.doxygen.Publisher
+
+# The DOCSET_PUBLISHER_NAME tag identifies the documentation publisher.
+# The default value is: Publisher.
+# This tag requires that the tag GENERATE_DOCSET is set to YES.
+
+DOCSET_PUBLISHER_NAME  = Publisher
+
+# If the GENERATE_HTMLHELP tag is set to YES then doxygen generates three
+# additional HTML index files: index.hhp, index.hhc, and index.hhk. The
+# index.hhp is a project file that can be read by Microsoft's HTML Help Workshop
+# on Windows. In the beginning of 2021 Microsoft took the original page, with
+# a.o. the download links, offline the HTML help workshop was already many years
+# in maintenance mode). You can download the HTML help workshop from the web
+# archives at Installation executable (see:
+# http://web.archive.org/web/20160201063255/http://download.microsoft.com/downlo
+# ad/0/A/9/0A939EF6-E31C-430F-A3DF-DFAE7960D564/htmlhelp.exe).
+#
+# The HTML Help Workshop contains a compiler that can convert all HTML output
+# generated by doxygen into a single compiled HTML file (.chm). Compiled HTML
+# files are now used as the Windows 98 help format, and will replace the old
+# Windows help format (.hlp) on all Windows platforms in the future. Compressed
+# HTML files also contain an index, a table of contents, and you can search for
+# words in the documentation. The HTML workshop also contains a viewer for
+# compressed HTML files.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+GENERATE_HTMLHELP      = NO
+
+# The CHM_FILE tag can be used to specify the file name of the resulting .chm
+# file. You can add a path in front of the file if the result should not be
+# written to the html output directory.
+# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
+
+CHM_FILE               =
+
+# The HHC_LOCATION tag can be used to specify the location (absolute path
+# including file name) of the HTML help compiler (hhc.exe). If non-empty,
+# doxygen will try to run the HTML help compiler on the generated index.hhp.
+# The file has to be specified with full path.
+# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
+
+HHC_LOCATION           =
+
+# The GENERATE_CHI flag controls if a separate .chi index file is generated
+# (YES) or that it should be included in the main .chm file (NO).
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
+
+GENERATE_CHI           = NO
+
+# The CHM_INDEX_ENCODING is used to encode HtmlHelp index (hhk), content (hhc)
+# and project file content.
+# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
+
+CHM_INDEX_ENCODING     =
+
+# The BINARY_TOC flag controls whether a binary table of contents is generated
+# (YES) or a normal table of contents (NO) in the .chm file. Furthermore it
+# enables the Previous and Next buttons.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
+
+BINARY_TOC             = NO
+
+# The TOC_EXPAND flag can be set to YES to add extra items for group members to
+# the table of contents of the HTML help documentation and to the tree view.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
+
+TOC_EXPAND             = NO
+
+# The SITEMAP_URL tag is used to specify the full URL of the place where the
+# generated documentation will be placed on the server by the user during the
+# deployment of the documentation. The generated sitemap is called sitemap.xml
+# and placed on the directory specified by HTML_OUTPUT. In case no SITEMAP_URL
+# is specified no sitemap is generated. For information about the sitemap
+# protocol see https://www.sitemaps.org
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+SITEMAP_URL            =
+
+# If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and
+# QHP_VIRTUAL_FOLDER are set, an additional index file will be generated that
+# can be used as input for Qt's qhelpgenerator to generate a Qt Compressed Help
+# (.qch) of the generated HTML documentation.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+GENERATE_QHP           = NO
+
+# If the QHG_LOCATION tag is specified, the QCH_FILE tag can be used to specify
+# the file name of the resulting .qch file. The path specified is relative to
+# the HTML output folder.
+# This tag requires that the tag GENERATE_QHP is set to YES.
+
+QCH_FILE               =
+
+# The QHP_NAMESPACE tag specifies the namespace to use when generating Qt Help
+# Project output. For more information please see Qt Help Project / Namespace
+# (see:
+# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#namespace).
+# The default value is: org.doxygen.Project.
+# This tag requires that the tag GENERATE_QHP is set to YES.
+
+QHP_NAMESPACE          = org.doxygen.Project
+
+# The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating Qt
+# Help Project output. For more information please see Qt Help Project / Virtual
+# Folders (see:
+# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#virtual-folders).
+# The default value is: doc.
+# This tag requires that the tag GENERATE_QHP is set to YES.
+
+QHP_VIRTUAL_FOLDER     = doc
+
+# If the QHP_CUST_FILTER_NAME tag is set, it specifies the name of a custom
+# filter to add. For more information please see Qt Help Project / Custom
+# Filters (see:
+# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#custom-filters).
+# This tag requires that the tag GENERATE_QHP is set to YES.
+
+QHP_CUST_FILTER_NAME   =
+
+# The QHP_CUST_FILTER_ATTRS tag specifies the list of the attributes of the
+# custom filter to add. For more information please see Qt Help Project / Custom
+# Filters (see:
+# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#custom-filters).
+# This tag requires that the tag GENERATE_QHP is set to YES.
+
+QHP_CUST_FILTER_ATTRS  =
+
+# The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this
+# project's filter section matches. Qt Help Project / Filter Attributes (see:
+# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#filter-attributes).
+# This tag requires that the tag GENERATE_QHP is set to YES.
+
+QHP_SECT_FILTER_ATTRS  =
+
+# The QHG_LOCATION tag can be used to specify the location (absolute path
+# including file name) of Qt's qhelpgenerator. If non-empty doxygen will try to
+# run qhelpgenerator on the generated .qhp file.
+# This tag requires that the tag GENERATE_QHP is set to YES.
+
+QHG_LOCATION           =
+
+# If the GENERATE_ECLIPSEHELP tag is set to YES, additional index files will be
+# generated, together with the HTML files, they form an Eclipse help plugin. To
+# install this plugin and make it available under the help contents menu in
+# Eclipse, the contents of the directory containing the HTML and XML files needs
+# to be copied into the plugins directory of eclipse. The name of the directory
+# within the plugins directory should be the same as the ECLIPSE_DOC_ID value.
+# After copying Eclipse needs to be restarted before the help appears.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+GENERATE_ECLIPSEHELP   = NO
+
+# A unique identifier for the Eclipse help plugin. When installing the plugin
+# the directory name containing the HTML and XML files should also have this
+# name. Each documentation set should have its own identifier.
+# The default value is: org.doxygen.Project.
+# This tag requires that the tag GENERATE_ECLIPSEHELP is set to YES.
+
+ECLIPSE_DOC_ID         = org.doxygen.Project
+
+# If you want full control over the layout of the generated HTML pages it might
+# be necessary to disable the index and replace it with your own. The
+# DISABLE_INDEX tag can be used to turn on/off the condensed index (tabs) at top
+# of each HTML page. A value of NO enables the index and the value YES disables
+# it. Since the tabs in the index contain the same information as the navigation
+# tree, you can set this option to YES if you also set GENERATE_TREEVIEW to YES.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+DISABLE_INDEX          = NO
+
+# The GENERATE_TREEVIEW tag is used to specify whether a tree-like index
+# structure should be generated to display hierarchical information. If the tag
+# value is set to YES, a side panel will be generated containing a tree-like
+# index structure (just like the one that is generated for HTML Help). For this
+# to work a browser that supports JavaScript, DHTML, CSS and frames is required
+# (i.e. any modern browser). Windows users are probably better off using the
+# HTML help feature. Via custom style sheets (see HTML_EXTRA_STYLESHEET) one can
+# further fine tune the look of the index (see "Fine-tuning the output"). As an
+# example, the default style sheet generated by doxygen has an example that
+# shows how to put an image at the root of the tree instead of the PROJECT_NAME.
+# Since the tree basically has the same information as the tab index, you could
+# consider setting DISABLE_INDEX to YES when enabling this option.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+GENERATE_TREEVIEW      = YES
+
+# When both GENERATE_TREEVIEW and DISABLE_INDEX are set to YES, then the
+# FULL_SIDEBAR option determines if the side bar is limited to only the treeview
+# area (value NO) or if it should extend to the full height of the window (value
+# YES). Setting this to YES gives a layout similar to
+# https://docs.readthedocs.io with more room for contents, but less room for the
+# project logo, title, and description. If either GENERATE_TREEVIEW or
+# DISABLE_INDEX is set to NO, this option has no effect.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+FULL_SIDEBAR           = NO
+
+# The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values that
+# doxygen will group on one line in the generated HTML documentation.
+#
+# Note that a value of 0 will completely suppress the enum values from appearing
+# in the overview section.
+# Minimum value: 0, maximum value: 20, default value: 4.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+ENUM_VALUES_PER_LINE   = 4
+
+# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be used
+# to set the initial width (in pixels) of the frame in which the tree is shown.
+# Minimum value: 0, maximum value: 1500, default value: 250.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+TREEVIEW_WIDTH         = 250
+
+# If the EXT_LINKS_IN_WINDOW option is set to YES, doxygen will open links to
+# external symbols imported via tag files in a separate window.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+EXT_LINKS_IN_WINDOW    = NO
+
+# If the OBFUSCATE_EMAILS tag is set to YES, doxygen will obfuscate email
+# addresses.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+OBFUSCATE_EMAILS       = YES
+
+# If the HTML_FORMULA_FORMAT option is set to svg, doxygen will use the pdf2svg
+# tool (see https://github.com/dawbarton/pdf2svg) or inkscape (see
+# https://inkscape.org) to generate formulas as SVG images instead of PNGs for
+# the HTML output. These images will generally look nicer at scaled resolutions.
+# Possible values are: png (the default) and svg (looks nicer but requires the
+# pdf2svg or inkscape tool).
+# The default value is: png.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_FORMULA_FORMAT    = png
+
+# Use this tag to change the font size of LaTeX formulas included as images in
+# the HTML documentation. When you change the font size after a successful
+# doxygen run you need to manually remove any form_*.png images from the HTML
+# output directory to force them to be regenerated.
+# Minimum value: 8, maximum value: 50, default value: 10.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+FORMULA_FONTSIZE       = 10
+
+# The FORMULA_MACROFILE can contain LaTeX \newcommand and \renewcommand commands
+# to create new LaTeX commands to be used in formulas as building blocks. See
+# the section "Including formulas" for details.
+
+FORMULA_MACROFILE      =
+
+# Enable the USE_MATHJAX option to render LaTeX formulas using MathJax (see
+# https://www.mathjax.org) which uses client side JavaScript for the rendering
+# instead of using pre-rendered bitmaps. Use this if you do not have LaTeX
+# installed or if you want to formulas look prettier in the HTML output. When
+# enabled you may also need to install MathJax separately and configure the path
+# to it using the MATHJAX_RELPATH option.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+USE_MATHJAX            = YES
+
+# With MATHJAX_VERSION it is possible to specify the MathJax version to be used.
+# Note that the different versions of MathJax have different requirements with
+# regards to the different settings, so it is possible that also other MathJax
+# settings have to be changed when switching between the different MathJax
+# versions.
+# Possible values are: MathJax_2 and MathJax_3.
+# The default value is: MathJax_2.
+# This tag requires that the tag USE_MATHJAX is set to YES.
+
+MATHJAX_VERSION        = MathJax_2
+
+# When MathJax is enabled you can set the default output format to be used for
+# the MathJax output. For more details about the output format see MathJax
+# version 2 (see:
+# http://docs.mathjax.org/en/v2.7-latest/output.html) and MathJax version 3
+# (see:
+# http://docs.mathjax.org/en/latest/web/components/output.html).
+# Possible values are: HTML-CSS (which is slower, but has the best
+# compatibility. This is the name for Mathjax version 2, for MathJax version 3
+# this will be translated into chtml), NativeMML (i.e. MathML. Only supported
+# for NathJax 2. For MathJax version 3 chtml will be used instead.), chtml (This
+# is the name for Mathjax version 3, for MathJax version 2 this will be
+# translated into HTML-CSS) and SVG.
+# The default value is: HTML-CSS.
+# This tag requires that the tag USE_MATHJAX is set to YES.
+
+MATHJAX_FORMAT         = HTML-CSS
+
+# When MathJax is enabled you need to specify the location relative to the HTML
+# output directory using the MATHJAX_RELPATH option. The destination directory
+# should contain the MathJax.js script. For instance, if the mathjax directory
+# is located at the same level as the HTML output directory, then
+# MATHJAX_RELPATH should be ../mathjax. The default value points to the MathJax
+# Content Delivery Network so you can quickly see the result without installing
+# MathJax. However, it is strongly recommended to install a local copy of
+# MathJax from https://www.mathjax.org before deployment. The default value is:
+# - in case of MathJax version 2: https://cdn.jsdelivr.net/npm/mathjax@2
+# - in case of MathJax version 3: https://cdn.jsdelivr.net/npm/mathjax@3
+# This tag requires that the tag USE_MATHJAX is set to YES.
+
+MATHJAX_RELPATH        =
+
+# The MATHJAX_EXTENSIONS tag can be used to specify one or more MathJax
+# extension names that should be enabled during MathJax rendering. For example
+# for MathJax version 2 (see
+# https://docs.mathjax.org/en/v2.7-latest/tex.html#tex-and-latex-extensions):
+# MATHJAX_EXTENSIONS = TeX/AMSmath TeX/AMSsymbols
+# For example for MathJax version 3 (see
+# http://docs.mathjax.org/en/latest/input/tex/extensions/index.html):
+# MATHJAX_EXTENSIONS = ams
+# This tag requires that the tag USE_MATHJAX is set to YES.
+
+MATHJAX_EXTENSIONS     =
+
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript pieces
+# of code that will be used on startup of the MathJax code. See the MathJax site
+# (see:
+# http://docs.mathjax.org/en/v2.7-latest/output.html) for more details. For an
+# example see the documentation.
+# This tag requires that the tag USE_MATHJAX is set to YES.
+
+MATHJAX_CODEFILE       =
+
+# When the SEARCHENGINE tag is enabled doxygen will generate a search box for
+# the HTML output. The underlying search engine uses javascript and DHTML and
+# should work on any modern browser. Note that when using HTML help
+# (GENERATE_HTMLHELP), Qt help (GENERATE_QHP), or docsets (GENERATE_DOCSET)
+# there is already a search function so this one should typically be disabled.
+# For large projects the javascript based search engine can be slow, then
+# enabling SERVER_BASED_SEARCH may provide a better solution. It is possible to
+# search using the keyboard; to jump to the search box use <access key> + S
+# (what the <access key> is depends on the OS and browser, but it is typically
+# <CTRL>, <ALT>/<option>, or both). Inside the search box use the <cursor down
+# key> to jump into the search results window, the results can be navigated
+# using the <cursor keys>. Press <Enter> to select an item or <escape> to cancel
+# the search. The filter options can be selected when the cursor is inside the
+# search box by pressing <Shift>+<cursor down>. Also here use the <cursor keys>
+# to select a filter and <Enter> or <escape> to activate or cancel the filter
+# option.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+SEARCHENGINE           = YES
+
+# When the SERVER_BASED_SEARCH tag is enabled the search engine will be
+# implemented using a web server instead of a web client using JavaScript. There
+# are two flavors of web server based searching depending on the EXTERNAL_SEARCH
+# setting. When disabled, doxygen will generate a PHP script for searching and
+# an index file used by the script. When EXTERNAL_SEARCH is enabled the indexing
+# and searching needs to be provided by external tools. See the section
+# "External Indexing and Searching" for details.
+# The default value is: NO.
+# This tag requires that the tag SEARCHENGINE is set to YES.
+
+SERVER_BASED_SEARCH    = NO
+
+# When EXTERNAL_SEARCH tag is enabled doxygen will no longer generate the PHP
+# script for searching. Instead the search results are written to an XML file
+# which needs to be processed by an external indexer. Doxygen will invoke an
+# external search engine pointed to by the SEARCHENGINE_URL option to obtain the
+# search results.
+#
+# Doxygen ships with an example indexer (doxyindexer) and search engine
+# (doxysearch.cgi) which are based on the open source search engine library
+# Xapian (see:
+# https://xapian.org/).
+#
+# See the section "External Indexing and Searching" for details.
+# The default value is: NO.
+# This tag requires that the tag SEARCHENGINE is set to YES.
+
+EXTERNAL_SEARCH        = NO
+
+# The SEARCHENGINE_URL should point to a search engine hosted by a web server
+# which will return the search results when EXTERNAL_SEARCH is enabled.
+#
+# Doxygen ships with an example indexer (doxyindexer) and search engine
+# (doxysearch.cgi) which are based on the open source search engine library
+# Xapian (see:
+# https://xapian.org/). See the section "External Indexing and Searching" for
+# details.
+# This tag requires that the tag SEARCHENGINE is set to YES.
+
+SEARCHENGINE_URL       =
+
+# When SERVER_BASED_SEARCH and EXTERNAL_SEARCH are both enabled the unindexed
+# search data is written to a file for indexing by an external tool. With the
+# SEARCHDATA_FILE tag the name of this file can be specified.
+# The default file is: searchdata.xml.
+# This tag requires that the tag SEARCHENGINE is set to YES.
+
+SEARCHDATA_FILE        = searchdata.xml
+
+# When SERVER_BASED_SEARCH and EXTERNAL_SEARCH are both enabled the
+# EXTERNAL_SEARCH_ID tag can be used as an identifier for the project. This is
+# useful in combination with EXTRA_SEARCH_MAPPINGS to search through multiple
+# projects and redirect the results back to the right project.
+# This tag requires that the tag SEARCHENGINE is set to YES.
+
+EXTERNAL_SEARCH_ID     =
+
+# The EXTRA_SEARCH_MAPPINGS tag can be used to enable searching through doxygen
+# projects other than the one defined by this configuration file, but that are
+# all added to the same external search index. Each project needs to have a
+# unique id set via EXTERNAL_SEARCH_ID. The search mapping then maps the id of
+# to a relative location where the documentation can be found. The format is:
+# EXTRA_SEARCH_MAPPINGS = tagname1=loc1 tagname2=loc2 ...
+# This tag requires that the tag SEARCHENGINE is set to YES.
+
+EXTRA_SEARCH_MAPPINGS  =
+
+#---------------------------------------------------------------------------
+# Configuration options related to the LaTeX output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_LATEX tag is set to YES, doxygen will generate LaTeX output.
+# The default value is: YES.
+
+GENERATE_LATEX         = NO
+
+# The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put. If a
+# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
+# it.
+# The default directory is: latex.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_OUTPUT           = latex
+
+# The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be
+# invoked.
+#
+# Note that when not enabling USE_PDFLATEX the default is latex when enabling
+# USE_PDFLATEX the default is pdflatex and when in the later case latex is
+# chosen this is overwritten by pdflatex. For specific output languages the
+# default can have been set differently, this depends on the implementation of
+# the output language.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_CMD_NAME         =
+
+# The MAKEINDEX_CMD_NAME tag can be used to specify the command name to generate
+# index for LaTeX.
+# Note: This tag is used in the Makefile / make.bat.
+# See also: LATEX_MAKEINDEX_CMD for the part in the generated output file
+# (.tex).
+# The default file is: makeindex.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+MAKEINDEX_CMD_NAME     = makeindex
+
+# The LATEX_MAKEINDEX_CMD tag can be used to specify the command name to
+# generate index for LaTeX. In case there is no backslash (\) as first character
+# it will be automatically added in the LaTeX code.
+# Note: This tag is used in the generated output file (.tex).
+# See also: MAKEINDEX_CMD_NAME for the part in the Makefile / make.bat.
+# The default value is: makeindex.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_MAKEINDEX_CMD    = makeindex
+
+# If the COMPACT_LATEX tag is set to YES, doxygen generates more compact LaTeX
+# documents. This may be useful for small projects and may help to save some
+# trees in general.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+COMPACT_LATEX          = NO
+
+# The PAPER_TYPE tag can be used to set the paper type that is used by the
+# printer.
+# Possible values are: a4 (210 x 297 mm), letter (8.5 x 11 inches), legal (8.5 x
+# 14 inches) and executive (7.25 x 10.5 inches).
+# The default value is: a4.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+PAPER_TYPE             = a4
+
+# The EXTRA_PACKAGES tag can be used to specify one or more LaTeX package names
+# that should be included in the LaTeX output. The package can be specified just
+# by its name or with the correct syntax as to be used with the LaTeX
+# \usepackage command. To get the times font for instance you can specify :
+# EXTRA_PACKAGES=times or EXTRA_PACKAGES={times}
+# To use the option intlimits with the amsmath package you can specify:
+# EXTRA_PACKAGES=[intlimits]{amsmath}
+# If left blank no extra packages will be included.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+EXTRA_PACKAGES         = amsmath
+
+# The LATEX_HEADER tag can be used to specify a user-defined LaTeX header for
+# the generated LaTeX document. The header should contain everything until the
+# first chapter. If it is left blank doxygen will generate a standard header. It
+# is highly recommended to start with a default header using
+# doxygen -w latex new_header.tex new_footer.tex new_stylesheet.sty
+# and then modify the file new_header.tex. See also section "Doxygen usage" for
+# information on how to generate the default header that doxygen normally uses.
+#
+# Note: Only use a user-defined header if you know what you are doing!
+# Note: The header is subject to change so you typically have to regenerate the
+# default header when upgrading to a newer version of doxygen. The following
+# commands have a special meaning inside the header (and footer): For a
+# description of the possible markers and block names see the documentation.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_HEADER           =
+
+# The LATEX_FOOTER tag can be used to specify a user-defined LaTeX footer for
+# the generated LaTeX document. The footer should contain everything after the
+# last chapter. If it is left blank doxygen will generate a standard footer. See
+# LATEX_HEADER for more information on how to generate a default footer and what
+# special commands can be used inside the footer. See also section "Doxygen
+# usage" for information on how to generate the default footer that doxygen
+# normally uses. Note: Only use a user-defined footer if you know what you are
+# doing!
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_FOOTER           =
+
+# The LATEX_EXTRA_STYLESHEET tag can be used to specify additional user-defined
+# LaTeX style sheets that are included after the standard style sheets created
+# by doxygen. Using this option one can overrule certain style aspects. Doxygen
+# will copy the style sheet files to the output directory.
+# Note: The order of the extra style sheet files is of importance (e.g. the last
+# style sheet in the list overrules the setting of the previous ones in the
+# list).
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_EXTRA_STYLESHEET =
+
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images or
+# other source files which should be copied to the LATEX_OUTPUT output
+# directory. Note that the files will be copied as-is; there are no commands or
+# markers available.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_EXTRA_FILES      =
+
+# If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated is
+# prepared for conversion to PDF (using ps2pdf or pdflatex). The PDF file will
+# contain links (just like the HTML output) instead of page references. This
+# makes the output suitable for online browsing using a PDF viewer.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+PDF_HYPERLINKS         = YES
+
+# If the USE_PDFLATEX tag is set to YES, doxygen will use the engine as
+# specified with LATEX_CMD_NAME to generate the PDF file directly from the LaTeX
+# files. Set this option to YES, to get a higher quality PDF documentation.
+#
+# See also section LATEX_CMD_NAME for selecting the engine.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+USE_PDFLATEX           = YES
+
+# The LATEX_BATCHMODE tag signals the behavior of LaTeX in case of an error.
+# Possible values are: NO same as ERROR_STOP, YES same as BATCH, BATCH In batch
+# mode nothing is printed on the terminal, errors are scrolled as if <return> is
+# hit at every error; missing files that TeX tries to input or request from
+# keyboard input (\read on a not open input stream) cause the job to abort,
+# NON_STOP In nonstop mode the diagnostic message will appear on the terminal,
+# but there is no possibility of user interaction just like in batch mode,
+# SCROLL In scroll mode, TeX will stop only for missing files to input or if
+# keyboard input is necessary and ERROR_STOP In errorstop mode, TeX will stop at
+# each error, asking for user intervention.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_BATCHMODE        = NO
+
+# If the LATEX_HIDE_INDICES tag is set to YES then doxygen will not include the
+# index chapters (such as File Index, Compound Index, etc.) in the output.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_HIDE_INDICES     = NO
+
+# The LATEX_BIB_STYLE tag can be used to specify the style to use for the
+# bibliography, e.g. plainnat, or ieeetr. See
+# https://en.wikipedia.org/wiki/BibTeX and \cite for more info.
+# The default value is: plain.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_BIB_STYLE        = plain
+
+# The LATEX_EMOJI_DIRECTORY tag is used to specify the (relative or absolute)
+# path from which the emoji images will be read. If a relative path is entered,
+# it will be relative to the LATEX_OUTPUT directory. If left blank the
+# LATEX_OUTPUT directory will be used.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_EMOJI_DIRECTORY  =
+
+#---------------------------------------------------------------------------
+# Configuration options related to the RTF output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_RTF tag is set to YES, doxygen will generate RTF output. The
+# RTF output is optimized for Word 97 and may not look too pretty with other RTF
+# readers/editors.
+# The default value is: NO.
+
+GENERATE_RTF           = NO
+
+# The RTF_OUTPUT tag is used to specify where the RTF docs will be put. If a
+# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
+# it.
+# The default directory is: rtf.
+# This tag requires that the tag GENERATE_RTF is set to YES.
+
+RTF_OUTPUT             = rtf
+
+# If the COMPACT_RTF tag is set to YES, doxygen generates more compact RTF
+# documents. This may be useful for small projects and may help to save some
+# trees in general.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_RTF is set to YES.
+
+COMPACT_RTF            = NO
+
+# If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated will
+# contain hyperlink fields. The RTF file will contain links (just like the HTML
+# output) instead of page references. This makes the output suitable for online
+# browsing using Word or some other Word compatible readers that support those
+# fields.
+#
+# Note: WordPad (write) and others do not support links.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_RTF is set to YES.
+
+RTF_HYPERLINKS         = NO
+
+# Load stylesheet definitions from file. Syntax is similar to doxygen's
+# configuration file, i.e. a series of assignments. You only have to provide
+# replacements, missing definitions are set to their default value.
+#
+# See also section "Doxygen usage" for information on how to generate the
+# default style sheet that doxygen normally uses.
+# This tag requires that the tag GENERATE_RTF is set to YES.
+
+RTF_STYLESHEET_FILE    =
+
+# Set optional variables used in the generation of an RTF document. Syntax is
+# similar to doxygen's configuration file. A template extensions file can be
+# generated using doxygen -e rtf extensionFile.
+# This tag requires that the tag GENERATE_RTF is set to YES.
+
+RTF_EXTENSIONS_FILE    =
+
+#---------------------------------------------------------------------------
+# Configuration options related to the man page output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_MAN tag is set to YES, doxygen will generate man pages for
+# classes and files.
+# The default value is: NO.
+
+GENERATE_MAN           = NO
+
+# The MAN_OUTPUT tag is used to specify where the man pages will be put. If a
+# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
+# it. A directory man3 will be created inside the directory specified by
+# MAN_OUTPUT.
+# The default directory is: man.
+# This tag requires that the tag GENERATE_MAN is set to YES.
+
+MAN_OUTPUT             = man
+
+# The MAN_EXTENSION tag determines the extension that is added to the generated
+# man pages. In case the manual section does not start with a number, the number
+# 3 is prepended. The dot (.) at the beginning of the MAN_EXTENSION tag is
+# optional.
+# The default value is: .3.
+# This tag requires that the tag GENERATE_MAN is set to YES.
+
+MAN_EXTENSION          = .3
+
+# The MAN_SUBDIR tag determines the name of the directory created within
+# MAN_OUTPUT in which the man pages are placed. If defaults to man followed by
+# MAN_EXTENSION with the initial . removed.
+# This tag requires that the tag GENERATE_MAN is set to YES.
+
+MAN_SUBDIR             =
+
+# If the MAN_LINKS tag is set to YES and doxygen generates man output, then it
+# will generate one additional man file for each entity documented in the real
+# man page(s). These additional files only source the real man page, but without
+# them the man command would be unable to find the correct page.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_MAN is set to YES.
+
+MAN_LINKS              = NO
+
+#---------------------------------------------------------------------------
+# Configuration options related to the XML output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_XML tag is set to YES, doxygen will generate an XML file that
+# captures the structure of the code including all documentation.
+# The default value is: NO.
+
+GENERATE_XML           = NO
+
+# The XML_OUTPUT tag is used to specify where the XML pages will be put. If a
+# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
+# it.
+# The default directory is: xml.
+# This tag requires that the tag GENERATE_XML is set to YES.
+
+XML_OUTPUT             = xml
+
+# If the XML_PROGRAMLISTING tag is set to YES, doxygen will dump the program
+# listings (including syntax highlighting and cross-referencing information) to
+# the XML output. Note that enabling this will significantly increase the size
+# of the XML output.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_XML is set to YES.
+
+XML_PROGRAMLISTING     = YES
+
+# If the XML_NS_MEMB_FILE_SCOPE tag is set to YES, doxygen will include
+# namespace members in file scope as well, matching the HTML output.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_XML is set to YES.
+
+XML_NS_MEMB_FILE_SCOPE = NO
+
+#---------------------------------------------------------------------------
+# Configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES, doxygen will generate Docbook files
+# that can be used to generate PDF.
+# The default value is: NO.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the Docbook pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it.
+# The default directory is: docbook.
+# This tag requires that the tag GENERATE_DOCBOOK is set to YES.
+
+DOCBOOK_OUTPUT         = docbook
+
+#---------------------------------------------------------------------------
+# Configuration options for the AutoGen Definitions output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_AUTOGEN_DEF tag is set to YES, doxygen will generate an
+# AutoGen Definitions (see https://autogen.sourceforge.net/) file that captures
+# the structure of the code including all documentation. Note that this feature
+# is still experimental and incomplete at the moment.
+# The default value is: NO.
+
+GENERATE_AUTOGEN_DEF   = NO
+
+#---------------------------------------------------------------------------
+# Configuration options related to Sqlite3 output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_SQLITE3 tag is set to YES doxygen will generate a Sqlite3
+# database with symbols found by doxygen stored in tables.
+# The default value is: NO.
+
+GENERATE_SQLITE3       = NO
+
+# The SQLITE3_OUTPUT tag is used to specify where the Sqlite3 database will be
+# put. If a relative path is entered the value of OUTPUT_DIRECTORY will be put
+# in front of it.
+# The default directory is: sqlite3.
+# This tag requires that the tag GENERATE_SQLITE3 is set to YES.
+
+SQLITE3_OUTPUT         = sqlite3
+
+# The SQLITE3_OVERWRITE_DB tag is set to YES, the existing doxygen_sqlite3.db
+# database file will be recreated with each doxygen run. If set to NO, doxygen
+# will warn if an a database file is already found and not modify it.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_SQLITE3 is set to YES.
+
+SQLITE3_RECREATE_DB    = YES
+
+#---------------------------------------------------------------------------
+# Configuration options related to the Perl module output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_PERLMOD tag is set to YES, doxygen will generate a Perl module
+# file that captures the structure of the code including all documentation.
+#
+# Note that this feature is still experimental and incomplete at the moment.
+# The default value is: NO.
+
+GENERATE_PERLMOD       = NO
+
+# If the PERLMOD_LATEX tag is set to YES, doxygen will generate the necessary
+# Makefile rules, Perl scripts and LaTeX code to be able to generate PDF and DVI
+# output from the Perl module output.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_PERLMOD is set to YES.
+
+PERLMOD_LATEX          = NO
+
+# If the PERLMOD_PRETTY tag is set to YES, the Perl module output will be nicely
+# formatted so it can be parsed by a human reader. This is useful if you want to
+# understand what is going on. On the other hand, if this tag is set to NO, the
+# size of the Perl module output will be much smaller and Perl will parse it
+# just the same.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_PERLMOD is set to YES.
+
+PERLMOD_PRETTY         = YES
+
+# The names of the make variables in the generated doxyrules.make file are
+# prefixed with the string contained in PERLMOD_MAKEVAR_PREFIX. This is useful
+# so different doxyrules.make files included by the same Makefile don't
+# overwrite each other's variables.
+# This tag requires that the tag GENERATE_PERLMOD is set to YES.
+
+PERLMOD_MAKEVAR_PREFIX =
+
+#---------------------------------------------------------------------------
+# Configuration options related to the preprocessor
+#---------------------------------------------------------------------------
+
+# If the ENABLE_PREPROCESSING tag is set to YES, doxygen will evaluate all
+# C-preprocessor directives found in the sources and include files.
+# The default value is: YES.
+
+ENABLE_PREPROCESSING   = YES
+
+# If the MACRO_EXPANSION tag is set to YES, doxygen will expand all macro names
+# in the source code. If set to NO, only conditional compilation will be
+# performed. Macro expansion can be done in a controlled way by setting
+# EXPAND_ONLY_PREDEF to YES.
+# The default value is: NO.
+# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
+
+MACRO_EXPANSION        = NO
+
+# If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES then
+# the macro expansion is limited to the macros specified with the PREDEFINED and
+# EXPAND_AS_DEFINED tags.
+# The default value is: NO.
+# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
+
+EXPAND_ONLY_PREDEF     = NO
+
+# If the SEARCH_INCLUDES tag is set to YES, the include files in the
+# INCLUDE_PATH will be searched if a #include is found.
+# The default value is: YES.
+# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
+
+SEARCH_INCLUDES        = YES
+
+# The INCLUDE_PATH tag can be used to specify one or more directories that
+# contain include files that are not input files but should be processed by the
+# preprocessor. Note that the INCLUDE_PATH is not recursive, so the setting of
+# RECURSIVE has no effect here.
+# This tag requires that the tag SEARCH_INCLUDES is set to YES.
+
+INCLUDE_PATH           =
+
+# You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard
+# patterns (like *.h and *.hpp) to filter out the header-files in the
+# directories. If left blank, the patterns specified with FILE_PATTERNS will be
+# used.
+# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
+
+INCLUDE_FILE_PATTERNS  =
+
+# The PREDEFINED tag can be used to specify one or more macro names that are
+# defined before the preprocessor is started (similar to the -D option of e.g.
+# gcc). The argument of the tag is a list of macros of the form: name or
+# name=definition (no spaces). If the definition and the "=" are omitted, "=1"
+# is assumed. To prevent a macro definition from being undefined via #undef or
+# recursively expanded use the := operator instead of the = operator.
+# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
+
+PREDEFINED             =
+
+# If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then this
+# tag can be used to specify a list of macro names that should be expanded. The
+# macro definition that is found in the sources will be used. Use the PREDEFINED
+# tag if you want to use a different macro definition that overrules the
+# definition found in the source code.
+# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
+
+EXPAND_AS_DEFINED      =
+
+# If the SKIP_FUNCTION_MACROS tag is set to YES then doxygen's preprocessor will
+# remove all references to function-like macros that are alone on a line, have
+# an all uppercase name, and do not end with a semicolon. Such function macros
+# are typically used for boiler-plate code, and will confuse the parser if not
+# removed.
+# The default value is: YES.
+# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
+
+SKIP_FUNCTION_MACROS   = YES
+
+#---------------------------------------------------------------------------
+# Configuration options related to external references
+#---------------------------------------------------------------------------
+
+# The TAGFILES tag can be used to specify one or more tag files. For each tag
+# file the location of the external documentation should be added. The format of
+# a tag file without this location is as follows:
+# TAGFILES = file1 file2 ...
+# Adding location for the tag files is done as follows:
+# TAGFILES = file1=loc1 "file2 = loc2" ...
+# where loc1 and loc2 can be relative or absolute paths or URLs. See the
+# section "Linking to external documentation" for more information about the use
+# of tag files.
+# Note: Each tag file must have a unique name (where the name does NOT include
+# the path). If a tag file is not located in the directory in which doxygen is
+# run, you must also specify the path to the tagfile here.
+
+TAGFILES               =
+
+# When a file name is specified after GENERATE_TAGFILE, doxygen will create a
+# tag file that is based on the input files it reads. See section "Linking to
+# external documentation" for more information about the usage of tag files.
+
+GENERATE_TAGFILE       =
+
+# If the ALLEXTERNALS tag is set to YES, all external classes and namespaces
+# will be listed in the class and namespace index. If set to NO, only the
+# inherited external classes will be listed.
+# The default value is: NO.
+
+ALLEXTERNALS           = NO
+
+# If the EXTERNAL_GROUPS tag is set to YES, all external groups will be listed
+# in the topic index. If set to NO, only the current project's groups will be
+# listed.
+# The default value is: YES.
+
+EXTERNAL_GROUPS        = YES
+
+# If the EXTERNAL_PAGES tag is set to YES, all external pages will be listed in
+# the related pages index. If set to NO, only the current project's pages will
+# be listed.
+# The default value is: YES.
+
+EXTERNAL_PAGES         = YES
+
+#---------------------------------------------------------------------------
+# Configuration options related to diagram generator tools
+#---------------------------------------------------------------------------
+
+# If set to YES the inheritance and collaboration graphs will hide inheritance
+# and usage relations if the target is undocumented or is not a class.
+# The default value is: YES.
+
+HIDE_UNDOC_RELATIONS   = NO
+
+# If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is
+# available from the path. This tool is part of Graphviz (see:
+# https://www.graphviz.org/), a graph visualization toolkit from AT&T and Lucent
+# Bell Labs. The other options in this section have no effect if this option is
+# set to NO
+# The default value is: NO.
+
+HAVE_DOT               = YES
+
+# The DOT_NUM_THREADS specifies the number of dot invocations doxygen is allowed
+# to run in parallel. When set to 0 doxygen will base this on the number of
+# processors available in the system. You can set it explicitly to a value
+# larger than 0 to get control over the balance between CPU load and processing
+# speed.
+# Minimum value: 0, maximum value: 32, default value: 0.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOT_NUM_THREADS        = 0
+
+# DOT_COMMON_ATTR is common attributes for nodes, edges and labels of
+# subgraphs. When you want a differently looking font in the dot files that
+# doxygen generates you can specify fontname, fontcolor and fontsize attributes.
+# For details please see <a href=https://graphviz.org/doc/info/attrs.html>Node,
+# Edge and Graph Attributes specification</a> You need to make sure dot is able
+# to find the font, which can be done by putting it in a standard location or by
+# setting the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
+# directory containing the font. Default graphviz fontsize is 14.
+# The default value is: fontname=Helvetica,fontsize=10.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOT_COMMON_ATTR        = "fontname=Helvetica,fontsize=10"
+
+# DOT_EDGE_ATTR is concatenated with DOT_COMMON_ATTR. For elegant style you can
+# add 'arrowhead=open, arrowtail=open, arrowsize=0.5'. <a
+# href=https://graphviz.org/doc/info/arrows.html>Complete documentation about
+# arrows shapes.</a>
+# The default value is: labelfontname=Helvetica,labelfontsize=10.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOT_EDGE_ATTR          = "labelfontname=Helvetica,labelfontsize=10"
+
+# DOT_NODE_ATTR is concatenated with DOT_COMMON_ATTR. For view without boxes
+# around nodes set 'shape=plain' or 'shape=plaintext' <a
+# href=https://www.graphviz.org/doc/info/shapes.html>Shapes specification</a>
+# The default value is: shape=box,height=0.2,width=0.4.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOT_NODE_ATTR          = "shape=box,height=0.2,width=0.4"
+
+# You can set the path where dot can find font specified with fontname in
+# DOT_COMMON_ATTR and others dot attributes.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOT_FONTPATH           =
+
+# If the CLASS_GRAPH tag is set to YES or GRAPH or BUILTIN then doxygen will
+# generate a graph for each documented class showing the direct and indirect
+# inheritance relations. In case the CLASS_GRAPH tag is set to YES or GRAPH and
+# HAVE_DOT is enabled as well, then dot will be used to draw the graph. In case
+# the CLASS_GRAPH tag is set to YES and HAVE_DOT is disabled or if the
+# CLASS_GRAPH tag is set to BUILTIN, then the built-in generator will be used.
+# If the CLASS_GRAPH tag is set to TEXT the direct and indirect inheritance
+# relations will be shown as texts / links.
+# Possible values are: NO, YES, TEXT, GRAPH and BUILTIN.
+# The default value is: YES.
+
+CLASS_GRAPH            = YES
+
+# If the COLLABORATION_GRAPH tag is set to YES then doxygen will generate a
+# graph for each documented class showing the direct and indirect implementation
+# dependencies (inheritance, containment, and class references variables) of the
+# class with other documented classes. Explicit enabling a collaboration graph,
+# when COLLABORATION_GRAPH is set to NO, can be accomplished by means of the
+# command \collaborationgraph. Disabling a collaboration graph can be
+# accomplished by means of the command \hidecollaborationgraph.
+# The default value is: YES.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+COLLABORATION_GRAPH    = YES
+
+# If the GROUP_GRAPHS tag is set to YES then doxygen will generate a graph for
+# groups, showing the direct groups dependencies. Explicit enabling a group
+# dependency graph, when GROUP_GRAPHS is set to NO, can be accomplished by means
+# of the command \groupgraph. Disabling a directory graph can be accomplished by
+# means of the command \hidegroupgraph. See also the chapter Grouping in the
+# manual.
+# The default value is: YES.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+GROUP_GRAPHS           = YES
+
+# If the UML_LOOK tag is set to YES, doxygen will generate inheritance and
+# collaboration diagrams in a style similar to the OMG's Unified Modeling
+# Language.
+# The default value is: NO.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+UML_LOOK               = YES
+
+# If the UML_LOOK tag is enabled, the fields and methods are shown inside the
+# class node. If there are many fields or methods and many nodes the graph may
+# become too big to be useful. The UML_LIMIT_NUM_FIELDS threshold limits the
+# number of items for each type to make the size more manageable. Set this to 0
+# for no limit. Note that the threshold may be exceeded by 50% before the limit
+# is enforced. So when you set the threshold to 10, up to 15 fields may appear,
+# but if the number exceeds 15, the total amount of fields shown is limited to
+# 10.
+# Minimum value: 0, maximum value: 100, default value: 10.
+# This tag requires that the tag UML_LOOK is set to YES.
+
+UML_LIMIT_NUM_FIELDS   = 10
+
+# If the DOT_UML_DETAILS tag is set to NO, doxygen will show attributes and
+# methods without types and arguments in the UML graphs. If the DOT_UML_DETAILS
+# tag is set to YES, doxygen will add type and arguments for attributes and
+# methods in the UML graphs. If the DOT_UML_DETAILS tag is set to NONE, doxygen
+# will not generate fields with class member information in the UML graphs. The
+# class diagrams will look similar to the default class diagrams but using UML
+# notation for the relationships.
+# Possible values are: NO, YES and NONE.
+# The default value is: NO.
+# This tag requires that the tag UML_LOOK is set to YES.
+
+DOT_UML_DETAILS        = NO
+
+# The DOT_WRAP_THRESHOLD tag can be used to set the maximum number of characters
+# to display on a single line. If the actual line length exceeds this threshold
+# significantly it will wrapped across multiple lines. Some heuristics are apply
+# to avoid ugly line breaks.
+# Minimum value: 0, maximum value: 1000, default value: 17.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOT_WRAP_THRESHOLD     = 17
+
+# If the TEMPLATE_RELATIONS tag is set to YES then the inheritance and
+# collaboration graphs will show the relations between templates and their
+# instances.
+# The default value is: NO.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+TEMPLATE_RELATIONS     = NO
+
+# If the INCLUDE_GRAPH, ENABLE_PREPROCESSING and SEARCH_INCLUDES tags are set to
+# YES then doxygen will generate a graph for each documented file showing the
+# direct and indirect include dependencies of the file with other documented
+# files. Explicit enabling an include graph, when INCLUDE_GRAPH is is set to NO,
+# can be accomplished by means of the command \includegraph. Disabling an
+# include graph can be accomplished by means of the command \hideincludegraph.
+# The default value is: YES.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+INCLUDE_GRAPH          = YES
+
+# If the INCLUDED_BY_GRAPH, ENABLE_PREPROCESSING and SEARCH_INCLUDES tags are
+# set to YES then doxygen will generate a graph for each documented file showing
+# the direct and indirect include dependencies of the file with other documented
+# files. Explicit enabling an included by graph, when INCLUDED_BY_GRAPH is set
+# to NO, can be accomplished by means of the command \includedbygraph. Disabling
+# an included by graph can be accomplished by means of the command
+# \hideincludedbygraph.
+# The default value is: YES.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+INCLUDED_BY_GRAPH      = YES
+
+# If the CALL_GRAPH tag is set to YES then doxygen will generate a call
+# dependency graph for every global function or class method.
+#
+# Note that enabling this option will significantly increase the time of a run.
+# So in most cases it will be better to enable call graphs for selected
+# functions only using the \callgraph command. Disabling a call graph can be
+# accomplished by means of the command \hidecallgraph.
+# The default value is: NO.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+CALL_GRAPH             = NO
+
+# If the CALLER_GRAPH tag is set to YES then doxygen will generate a caller
+# dependency graph for every global function or class method.
+#
+# Note that enabling this option will significantly increase the time of a run.
+# So in most cases it will be better to enable caller graphs for selected
+# functions only using the \callergraph command. Disabling a caller graph can be
+# accomplished by means of the command \hidecallergraph.
+# The default value is: NO.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+CALLER_GRAPH           = NO
+
+# If the GRAPHICAL_HIERARCHY tag is set to YES then doxygen will graphical
+# hierarchy of all classes instead of a textual one.
+# The default value is: YES.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+GRAPHICAL_HIERARCHY    = YES
+
+# If the DIRECTORY_GRAPH tag is set to YES then doxygen will show the
+# dependencies a directory has on other directories in a graphical way. The
+# dependency relations are determined by the #include relations between the
+# files in the directories. Explicit enabling a directory graph, when
+# DIRECTORY_GRAPH is set to NO, can be accomplished by means of the command
+# \directorygraph. Disabling a directory graph can be accomplished by means of
+# the command \hidedirectorygraph.
+# The default value is: YES.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DIRECTORY_GRAPH        = YES
+
+# The DIR_GRAPH_MAX_DEPTH tag can be used to limit the maximum number of levels
+# of child directories generated in directory dependency graphs by dot.
+# Minimum value: 1, maximum value: 25, default value: 1.
+# This tag requires that the tag DIRECTORY_GRAPH is set to YES.
+
+DIR_GRAPH_MAX_DEPTH    = 1
+
+# The DOT_IMAGE_FORMAT tag can be used to set the image format of the images
+# generated by dot. For an explanation of the image formats see the section
+# output formats in the documentation of the dot tool (Graphviz (see:
+# https://www.graphviz.org/)).
+# Note: If you choose svg you need to set HTML_FILE_EXTENSION to xhtml in order
+# to make the SVG files visible in IE 9+ (other browsers do not have this
+# requirement).
+# Possible values are: png, jpg, gif, svg, png:gd, png:gd:gd, png:cairo,
+# png:cairo:gd, png:cairo:cairo, png:cairo:gdiplus, png:gdiplus and
+# png:gdiplus:gdiplus.
+# The default value is: png.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOT_IMAGE_FORMAT       = png
+
+# If DOT_IMAGE_FORMAT is set to svg, then this option can be set to YES to
+# enable generation of interactive SVG images that allow zooming and panning.
+#
+# Note that this requires a modern browser other than Internet Explorer. Tested
+# and working are Firefox, Chrome, Safari, and Opera.
+# Note: For IE 9+ you need to set HTML_FILE_EXTENSION to xhtml in order to make
+# the SVG files visible. Older versions of IE do not have SVG support.
+# The default value is: NO.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+INTERACTIVE_SVG        = NO
+
+# The DOT_PATH tag can be used to specify the path where the dot tool can be
+# found. If left blank, it is assumed the dot tool can be found in the path.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOT_PATH               =
+
+# The DOTFILE_DIRS tag can be used to specify one or more directories that
+# contain dot files that are included in the documentation (see the \dotfile
+# command).
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOTFILE_DIRS           =
+
+# You can include diagrams made with dia in doxygen documentation. Doxygen will
+# then run dia to produce the diagram and insert it in the documentation. The
+# DIA_PATH tag allows you to specify the directory where the dia binary resides.
+# If left empty dia is assumed to be found in the default search path.
+
+DIA_PATH               =
+
+# The DIAFILE_DIRS tag can be used to specify one or more directories that
+# contain dia files that are included in the documentation (see the \diafile
+# command).
+
+DIAFILE_DIRS           =
+
+# When using plantuml, the PLANTUML_JAR_PATH tag should be used to specify the
+# path where java can find the plantuml.jar file or to the filename of jar file
+# to be used. If left blank, it is assumed PlantUML is not used or called during
+# a preprocessing step. Doxygen will generate a warning when it encounters a
+# \startuml command in this case and will not generate output for the diagram.
+
+PLANTUML_JAR_PATH      =
+
+# When using plantuml, the PLANTUML_CFG_FILE tag can be used to specify a
+# configuration file for plantuml.
+
+PLANTUML_CFG_FILE      =
+
+# When using plantuml, the specified paths are searched for files specified by
+# the !include statement in a plantuml block.
+
+PLANTUML_INCLUDE_PATH  =
+
+# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of nodes
+# that will be shown in the graph. If the number of nodes in a graph becomes
+# larger than this value, doxygen will truncate the graph, which is visualized
+# by representing a node as a red box. Note that doxygen if the number of direct
+# children of the root node in a graph is already larger than
+# DOT_GRAPH_MAX_NODES then the graph will not be shown at all. Also note that
+# the size of a graph can be further restricted by MAX_DOT_GRAPH_DEPTH.
+# Minimum value: 0, maximum value: 10000, default value: 50.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOT_GRAPH_MAX_NODES    = 500
+
+# The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the graphs
+# generated by dot. A depth value of 3 means that only nodes reachable from the
+# root by following a path via at most 3 edges will be shown. Nodes that lay
+# further from the root node will be omitted. Note that setting this option to 1
+# or 2 may greatly reduce the computation time needed for large code bases. Also
+# note that the size of a graph can be further restricted by
+# DOT_GRAPH_MAX_NODES. Using a depth of 0 means no depth restriction.
+# Minimum value: 0, maximum value: 1000, default value: 0.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+MAX_DOT_GRAPH_DEPTH    = 0
+
+# Set the DOT_MULTI_TARGETS tag to YES to allow dot to generate multiple output
+# files in one run (i.e. multiple -o and -T options on the command line). This
+# makes dot run faster, but since only newer versions of dot (>1.8.10) support
+# this, this feature is disabled by default.
+# The default value is: NO.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOT_MULTI_TARGETS      = NO
+
+# If the GENERATE_LEGEND tag is set to YES doxygen will generate a legend page
+# explaining the meaning of the various boxes and arrows in the dot generated
+# graphs.
+# Note: This tag requires that UML_LOOK isn't set, i.e. the doxygen internal
+# graphical representation for inheritance and collaboration diagrams is used.
+# The default value is: YES.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+GENERATE_LEGEND        = YES
+
+# If the DOT_CLEANUP tag is set to YES, doxygen will remove the intermediate
+# files that are used to generate the various graphs.
+#
+# Note: This setting is not only used for dot files but also for msc temporary
+# files.
+# The default value is: YES.
+
+DOT_CLEANUP            = YES
+
+# You can define message sequence charts within doxygen comments using the \msc
+# command. If the MSCGEN_TOOL tag is left empty (the default), then doxygen will
+# use a built-in version of mscgen tool to produce the charts. Alternatively,
+# the MSCGEN_TOOL tag can also specify the name an external tool. For instance,
+# specifying prog as the value, doxygen will call the tool as prog -T
+# <outfile_format> -o <outputfile> <inputfile>. The external tool should support
+# output file formats "png", "eps", "svg", and "ismap".
+
+MSCGEN_TOOL            =
+
+# The MSCFILE_DIRS tag can be used to specify one or more directories that
+# contain msc files that are included in the documentation (see the \mscfile
+# command).
+
+MSCFILE_DIRS           =
+
+# Enable BibTeX for citations
+GENERATE_BIBTEX = YES
+USE_BIBTEX = YES
+BIBFILE = @BIBTEX_FILE@
+
+# Other settings
+
+EXTERNAL_LINKS = YES
\ No newline at end of file
diff --git a/mkdocs.yml b/mkdocs.yml
index 54598cc..100d0b3 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -73,127 +73,118 @@ plugins:
   - mkdoxy:
       projects:
         propulsion_design:
-          src-dirs: ../aircraft-design/propulsion_design
+          doxyfile: Doxyfile
+          variables:
+            PROJECT_NAME: "propulsion_design"
+            OUTPUT_DIR: "docs/api/propulsion"
+            BIBTEX_FILE: "docs/assets/bibtex/propulsion_design_literature.bib"
+          src-dirs: ../aircraft-design/propulsion_design/src/
+          full-doc: True
+        ecological_assessment:
+          doxyfile: Doxyfile
+          variables:
+            PROJECT_NAME: "ecological_assessment"
+            OUTPUT_DIR: "docs/api/ecological_assessment"
+            BIBTEX_FILE: "docs/assets/bibtex/ecological_assessment_literature.bib"
+          src-dirs: ../aircraft-design/ecological_assessment/src/
           full-doc: True
-          doxy-cfg:
-            INPUT: ../aircraft-design/propulsion_design/src
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
-            OUTPUT_DIRECTORY: "./docs/propulsion_design"
-            BIBTEX_FILE: docs/assets/bibtex/propulsion_design_literature.bib
         initial_sizing:
-          src-dirs: ../aircraft-design/initial_sizing/
+          doxyfile: Doxyfile
+          variables:
+            PROJECT_NAME: "initial_sizing"
+            OUTPUT_DIR: "docs/api/initial_sizing"
+            BIBTEX_FILE: "docs/assets/bibtex/initial_sizing_literature.bib"
+          src-dirs: ../aircraft-design/initial_sizing/src/
           full-doc: true
-          output: docs/initial_sizing
-          doxy-cfg:
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         create_mission_xml:
-          src-dirs: ../aircraft-design/create_mission_xml/
-          full-doc: True
-          output: docs/create_mission_xml
-          doxy-cfg:
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
-            BIBTEX_FILE: docs/assets/bibtex/create_mission_xml_literature.bib
+          doxyfile: Doxyfile
+          variables:
+            PROJECT_NAME: "create_mission_xml"
+            OUTPUT_DIR: "docs/api/create_mission_xml"
+            BIBTEX_FILE: "docs/assets/bibtex/create_mission_xml_literature.bib"
+          src-dirs: ../aircraft-design/create_mission_xml/src/
+          full-doc: true
         fuselage_design:
-          src-dirs: ../aircraft-design/fuselage_design/
+          doxyfile: Doxyfile
+          variables:
+            PROJECT_NAME: "fuselage_design"
+            OUTPUT_DIR: "docs/api/fuselage_design"
+            BIBTEX_FILE: "docs/assets/bibtex/fuselage_design_literature.bib"
+          src-dirs: ../aircraft-design/fuselage_design/src/
           full-doc: true
-          output: docs/fuselage_design
-          doxy-cfg:
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         wing_design:
-          src-dirs: ../aircraft-design/wing_design/
+          doxyfile: Doxyfile
+          variables:
+            PROJECT_NAME: "wing_design"
+            OUTPUT_DIR: "docs/api/wing_design"
+            BIBTEX_FILE: "docs/assets/bibtex/wing_design_literature.bib"
+          src-dirs: ../aircraft-design/wing_design/src/
           full-doc: True
-          output: docs/wing_design
-          doxy-cfg:
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         empennage_design:
-          src-dirs: ../aircraft-design/empennage_design/
+          doxyfile: Doxyfile
+          variables:
+            PROJECT_NAME: "empennage_design"
+            OUTPUT_DIR: "docs/api/empennage_design"
+          src-dirs: ../aircraft-design/empennage_design/src/
           full-doc: true
-          output: docs/empennage_design
-          doxy-cfg:
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         tank_design:
-          src-dirs: ../aircraft-design/tank_design/
+          doxyfile: Doxyfile
+          variables:
+            PROJECT_NAME: "tank_design"
+            OUTPUT_DIR: "docs/api/tank_design"
+          src-dirs: ../aircraft-design/tank_design/src/
           full-doc: true
-          output: docs/tank_design
-          doxy-cfg:
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         landing_gear_design:
-          src-dirs: ../aircraft-design/landing_gear_design/
+          doxyfile: Doxyfile
+          variables:
+            PROJECT_NAME: "landing_gear_design"
+            OUTPUT_DIR: "docs/api/landing_gear_design"
+          src-dirs: ../aircraft-design/landing_gear_design/src/
           full-doc: true
-          output: docs/landing_gear_design
-          doxy-cfg:
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         systems_design:
-          src-dirs: ../aircraft-design/systems_design/
-          full-doc: true
-          output: docs/systems_design
-          doxy-cfg:
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
-        ecological_assessment:
-          src-dirs: ../aircraft-design/ecological_assessment/
+          doxyfile: Doxyfile
+          variables:
+            PROJECT_NAME: "systems_design"
+            OUTPUT_DIR: "docs/api/systems_design"
+          src-dirs: ../aircraft-design/systems_design/src/
           full-doc: true
-          output: docs/ecological_assessment
-          doxy-cfg:
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
-            BIBTEX_FILE: docs/assets/bibtex/ecological_assessment_literature.bib
         aerodynamic_analysis:
-          src-dirs: ../aircraft-design/aerodynamic_analysis/
+          doxyfile: Doxyfile
+          variables:
+            PROJECT_NAME: "aerodynamic_analysis"
+            OUTPUT_DIR: "docs/api/aerodynamic_analysis"
+          src-dirs: ../aircraft-design/aerodynamic_analysis/src/
           full-doc: true
-          output: docs/aerodynamic_analysis
-          doxy-cfg:
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         aircraftGeometry2:
-          src-dirs: ../aircraft-design/libs/aircraftGeometry2/
+          doxyfile: Doxyfile
+          variables:
+            PROJECT_NAME: "aircraftGeometry2"
+            OUTPUT_DIR: "docs/api/aircraftGeometry2"
+          src-dirs: ../aircraft-design/libs/aircraftGeometry2/src/
           full-doc: true
-          output: docs/aircraftGeometry2
-          doxy-cfg:
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
         engine:
-          src-dirs: ../aircraft-design/libs/engine/
+          doxyfile: Doxyfile
+          variables:
+            PROJECT_NAME: "engine"
+            OUTPUT_DIR: "docs/api/engine"
+          src-dirs: ../aircraft-design/libs/engine/src/
+          full-doc: true
+        mission_analysis:
+          doxyfile: Doxyfile
+          variables:
+            PROJECT_NAME: "mission_analysis"
+            OUTPUT_DIR: "docs/api/mission_analysis"
+          src-dirs: ../aircraft-design/mission_analysis/src/
           full-doc: true
-          output: docs/engine
-          doxy-cfg:
-            FILE_PATTERNS: "*.cpp *.h"
-            RECURSIVE: True
-            EXTRACT_ALL: YES
-
   - glightbox                             # Plugin for lightbox-style image and content viewing.
 
+
 # === Theme configuration ===
 theme:
   name: material                          # Specifies the theme name (alternatives: material, mkdocs, readthedocs).
   favicon: assets/favicon.png             # Path to the favicon image displayed in the browser tab (same as logo).
   logo: assets/images/logos/unicado-icon.png  # Path to the UNICADO logo displayed in the header.
   custom_dir: overrides                      # Directory for custom files (like footer).
-  # Theme colors configuration
-  palette:
-   - scheme: slate
-     primary: green
-     accent: red
 
   # Feature configurations for navigation and ToC behavior
   features:
@@ -216,6 +207,8 @@ theme:
 
 nav:                                      # Customizes the main navigation structure of the site.
   - Home: index.md                     # Main page of the site.
+  - Reference: reference.md
+  - Reference: reference.md
   - Download:                             # Top-level navigation item for "Download".
     - Getting Started: download/getting-started.md  # Link to the getting started page.
     - Installation: download/installation.md  # Link to the installation page.
@@ -281,6 +274,7 @@ nav:                                      # Customizes the main navigation struc
             # - API Reference: # TODO define for Python
           - Propulsion Design:
             - Introduction: documentation/sizing/propulsion_design/index.md
+            - Overview: documentation/sizing/propulsion_design/overview.md
             - Getting Started: documentation/sizing/propulsion_design/getting-started.md
             - Engineering Principles: documentation/sizing/propulsion_design/engineering_principles.md
             - Software Architecture: documentation/sizing/propulsion_design/software_architecture.md
@@ -291,10 +285,11 @@ nav:                                      # Customizes the main navigation struc
             - Changelog: documentation/sizing/propulsion_design/changelog.md
             - Additional Information: documentation/sizing/propulsion_design/additional.md
             - API Reference:
+              - propulsion_design/functions.md
+              - propulsion_design/functions.md
               - propulsion_design/classes.md
               - propulsion_design/namespaces.md
               - propulsion_design/files.md
-              - propulsion_design/functions.md
           - Landing Gear Design:
             - Introduction: documentation/sizing/landing_gear_design/index.md
             - Getting Started: documentation/sizing/landing_gear_design/getting_started.md
@@ -312,8 +307,8 @@ nav:                                      # Customizes the main navigation struc
               - systems_design/namespaces.md
               - systems_design/files.md
               - systems_design/functions.md
-      - Analysis:   
-          - Modules: documentation/analysis.md # Link to analysis module page.
+      - Analysis:
+          - documentation/analysis/index.md # Link to analysis module page.
           - Mission Analysis:
             - Introduction: documentation/analysis/mission_analysis/index.md
             - Getting Started: documentation/analysis/mission_analysis/getting_started.md
@@ -359,14 +354,18 @@ nav:                                      # Customizes the main navigation struc
         - AircraftGeometry2:
           - Introduction: documentation/libraries/aircraftGeometry2/index.md
           - Getting Started: documentation/libraries/aircraftGeometry2/getting-started.md
-          - Tutorial: documentation/libraries/aircraftGeometry2/tutorial.md
+          - Tutorial:
+            - Overview: documentation/libraries/aircraftGeometry2/tutorial.md
+            - Geometry: documentation/libraries/aircraftGeometry2/tutorial-geometry.md
+            - Factory: documentation/libraries/aircraftGeometry2/tutorial-factory.md
+            - Convert: documentation/libraries/aircraftGeometry2/tutorial-convert.md
           - API Reference:
             - aircraftGeometry2/classes.md
             - aircraftGeometry2/namespaces.md
             - aircraftGeometry2/files.md
             - aircraftGeometry2/functions.md
         - engine:
-          - Introduction: documentation/libraries/engine/index.md 
+          - Introduction: documentation/libraries/engine/index.md
     - Utilities: documentation/additional_software.md
     - Workflow: 'workflow.md' # Link to the workflow page.
   - Get Involved:
-- 
GitLab


From f0f26b82d43b3565e2f8ead0b7982e550c064e5b Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 10:15:20 +0100
Subject: [PATCH 22/33] provide absolute path

---
 mkdocs.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/mkdocs.yml b/mkdocs.yml
index 100d0b3..262a619 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -78,7 +78,7 @@ plugins:
             PROJECT_NAME: "propulsion_design"
             OUTPUT_DIR: "docs/api/propulsion"
             BIBTEX_FILE: "docs/assets/bibtex/propulsion_design_literature.bib"
-          src-dirs: ../aircraft-design/propulsion_design/src/
+          src-dirs: $CI_PROJECT_DIR/aircraft-design/propulsion_design/src/
           full-doc: True
         ecological_assessment:
           doxyfile: Doxyfile
-- 
GitLab


From c1c1fa2fd852bb587401c1370f9b6125dad68a3d Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 10:30:13 +0100
Subject: [PATCH 23/33] change src path

---
 mkdocs.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/mkdocs.yml b/mkdocs.yml
index 262a619..9822f95 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -78,7 +78,7 @@ plugins:
             PROJECT_NAME: "propulsion_design"
             OUTPUT_DIR: "docs/api/propulsion"
             BIBTEX_FILE: "docs/assets/bibtex/propulsion_design_literature.bib"
-          src-dirs: $CI_PROJECT_DIR/aircraft-design/propulsion_design/src/
+          src-dirs: $CI_PROJECT_DIR/aircraft-design/propulsion_design/src
           full-doc: True
         ecological_assessment:
           doxyfile: Doxyfile
@@ -86,7 +86,7 @@ plugins:
             PROJECT_NAME: "ecological_assessment"
             OUTPUT_DIR: "docs/api/ecological_assessment"
             BIBTEX_FILE: "docs/assets/bibtex/ecological_assessment_literature.bib"
-          src-dirs: ../aircraft-design/ecological_assessment/src/
+          src-dirs: ../aircraft-design/ecological_assessment/src
           full-doc: True
         initial_sizing:
           doxyfile: Doxyfile
-- 
GitLab


From 22ccedfedd0503bfe29e96f19e90c24259a4e411 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 11:40:04 +0100
Subject: [PATCH 24/33] Fix path issue

---
 mkdocs.yml | 190 ++++++++++++++++++++++++++---------------------------
 1 file changed, 95 insertions(+), 95 deletions(-)

diff --git a/mkdocs.yml b/mkdocs.yml
index 9822f95..1ca5700 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -73,111 +73,114 @@ plugins:
   - mkdoxy:
       projects:
         propulsion_design:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "propulsion_design"
-            OUTPUT_DIR: "docs/api/propulsion"
-            BIBTEX_FILE: "docs/assets/bibtex/propulsion_design_literature.bib"
-          src-dirs: $CI_PROJECT_DIR/aircraft-design/propulsion_design/src
-          full-doc: True
-        ecological_assessment:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "ecological_assessment"
-            OUTPUT_DIR: "docs/api/ecological_assessment"
-            BIBTEX_FILE: "docs/assets/bibtex/ecological_assessment_literature.bib"
-          src-dirs: ../aircraft-design/ecological_assessment/src
+          src-dirs: aircraft-design/propulsion_design/src
           full-doc: True
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+            OUTPUT_DIRECTORY: "./docs/propulsion_design"
+            BIBTEX_FILE: docs/assets/bibtex/propulsion_design_literature.bib
         initial_sizing:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "initial_sizing"
-            OUTPUT_DIR: "docs/api/initial_sizing"
-            BIBTEX_FILE: "docs/assets/bibtex/initial_sizing_literature.bib"
-          src-dirs: ../aircraft-design/initial_sizing/src/
+          src-dirs: ../aircraft-design/initial_sizing/
           full-doc: true
+          output: docs/initial_sizing
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         create_mission_xml:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "create_mission_xml"
-            OUTPUT_DIR: "docs/api/create_mission_xml"
-            BIBTEX_FILE: "docs/assets/bibtex/create_mission_xml_literature.bib"
-          src-dirs: ../aircraft-design/create_mission_xml/src/
-          full-doc: true
+          src-dirs: ../aircraft-design/create_mission_xml/
+          full-doc: True
+          output: docs/create_mission_xml
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+            BIBTEX_FILE: docs/assets/bibtex/create_mission_xml_literature.bib
         fuselage_design:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "fuselage_design"
-            OUTPUT_DIR: "docs/api/fuselage_design"
-            BIBTEX_FILE: "docs/assets/bibtex/fuselage_design_literature.bib"
-          src-dirs: ../aircraft-design/fuselage_design/src/
+          src-dirs: ../aircraft-design/fuselage_design/
           full-doc: true
+          output: docs/fuselage_design
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         wing_design:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "wing_design"
-            OUTPUT_DIR: "docs/api/wing_design"
-            BIBTEX_FILE: "docs/assets/bibtex/wing_design_literature.bib"
-          src-dirs: ../aircraft-design/wing_design/src/
+          src-dirs: ../aircraft-design/wing_design/
           full-doc: True
+          output: docs/wing_design
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         empennage_design:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "empennage_design"
-            OUTPUT_DIR: "docs/api/empennage_design"
-          src-dirs: ../aircraft-design/empennage_design/src/
+          src-dirs: ../aircraft-design/empennage_design/
           full-doc: true
+          output: docs/empennage_design
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         tank_design:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "tank_design"
-            OUTPUT_DIR: "docs/api/tank_design"
-          src-dirs: ../aircraft-design/tank_design/src/
+          src-dirs: ../aircraft-design/tank_design/
           full-doc: true
+          output: docs/tank_design
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         landing_gear_design:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "landing_gear_design"
-            OUTPUT_DIR: "docs/api/landing_gear_design"
-          src-dirs: ../aircraft-design/landing_gear_design/src/
+          src-dirs: ../aircraft-design/landing_gear_design/
           full-doc: true
+          output: docs/landing_gear_design
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         systems_design:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "systems_design"
-            OUTPUT_DIR: "docs/api/systems_design"
-          src-dirs: ../aircraft-design/systems_design/src/
+          src-dirs: ../aircraft-design/systems_design/
+          full-doc: true
+          output: docs/systems_design
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+        ecological_assessment:
+          src-dirs: ../aircraft-design/ecological_assessment/
           full-doc: true
+          output: docs/ecological_assessment
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+            BIBTEX_FILE: docs/assets/bibtex/ecological_assessment_literature.bib
         aerodynamic_analysis:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "aerodynamic_analysis"
-            OUTPUT_DIR: "docs/api/aerodynamic_analysis"
-          src-dirs: ../aircraft-design/aerodynamic_analysis/src/
+          src-dirs: ../aircraft-design/aerodynamic_analysis/
           full-doc: true
+          output: docs/aerodynamic_analysis
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         aircraftGeometry2:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "aircraftGeometry2"
-            OUTPUT_DIR: "docs/api/aircraftGeometry2"
-          src-dirs: ../aircraft-design/libs/aircraftGeometry2/src/
+          src-dirs: ../aircraft-design/libs/aircraftGeometry2/
           full-doc: true
+          output: docs/aircraftGeometry2
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
         engine:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "engine"
-            OUTPUT_DIR: "docs/api/engine"
-          src-dirs: ../aircraft-design/libs/engine/src/
+          src-dirs: ../aircraft-design/libs/engine/
           full-doc: true
-        mission_analysis:
-          doxyfile: Doxyfile
-          variables:
-            PROJECT_NAME: "mission_analysis"
-            OUTPUT_DIR: "docs/api/mission_analysis"
-          src-dirs: ../aircraft-design/mission_analysis/src/
-          full-doc: true
-  - glightbox                             # Plugin for lightbox-style image and content viewing.
+          output: docs/engine
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
 
+  - glightbox                             # Plugin for lightbox-style image and content viewing.
 
 # === Theme configuration ===
 theme:
@@ -185,6 +188,11 @@ theme:
   favicon: assets/favicon.png             # Path to the favicon image displayed in the browser tab (same as logo).
   logo: assets/images/logos/unicado-icon.png  # Path to the UNICADO logo displayed in the header.
   custom_dir: overrides                      # Directory for custom files (like footer).
+  # Theme colors configuration
+  palette:
+   - scheme: slate
+     primary: green
+     accent: red
 
   # Feature configurations for navigation and ToC behavior
   features:
@@ -207,8 +215,6 @@ theme:
 
 nav:                                      # Customizes the main navigation structure of the site.
   - Home: index.md                     # Main page of the site.
-  - Reference: reference.md
-  - Reference: reference.md
   - Download:                             # Top-level navigation item for "Download".
     - Getting Started: download/getting-started.md  # Link to the getting started page.
     - Installation: download/installation.md  # Link to the installation page.
@@ -274,7 +280,6 @@ nav:                                      # Customizes the main navigation struc
             # - API Reference: # TODO define for Python
           - Propulsion Design:
             - Introduction: documentation/sizing/propulsion_design/index.md
-            - Overview: documentation/sizing/propulsion_design/overview.md
             - Getting Started: documentation/sizing/propulsion_design/getting-started.md
             - Engineering Principles: documentation/sizing/propulsion_design/engineering_principles.md
             - Software Architecture: documentation/sizing/propulsion_design/software_architecture.md
@@ -285,11 +290,10 @@ nav:                                      # Customizes the main navigation struc
             - Changelog: documentation/sizing/propulsion_design/changelog.md
             - Additional Information: documentation/sizing/propulsion_design/additional.md
             - API Reference:
-              - propulsion_design/functions.md
-              - propulsion_design/functions.md
               - propulsion_design/classes.md
               - propulsion_design/namespaces.md
               - propulsion_design/files.md
+              - propulsion_design/functions.md
           - Landing Gear Design:
             - Introduction: documentation/sizing/landing_gear_design/index.md
             - Getting Started: documentation/sizing/landing_gear_design/getting_started.md
@@ -307,8 +311,8 @@ nav:                                      # Customizes the main navigation struc
               - systems_design/namespaces.md
               - systems_design/files.md
               - systems_design/functions.md
-      - Analysis:
-          - documentation/analysis/index.md # Link to analysis module page.
+      - Analysis:   
+          - Modules: documentation/analysis.md # Link to analysis module page.
           - Mission Analysis:
             - Introduction: documentation/analysis/mission_analysis/index.md
             - Getting Started: documentation/analysis/mission_analysis/getting_started.md
@@ -354,18 +358,14 @@ nav:                                      # Customizes the main navigation struc
         - AircraftGeometry2:
           - Introduction: documentation/libraries/aircraftGeometry2/index.md
           - Getting Started: documentation/libraries/aircraftGeometry2/getting-started.md
-          - Tutorial:
-            - Overview: documentation/libraries/aircraftGeometry2/tutorial.md
-            - Geometry: documentation/libraries/aircraftGeometry2/tutorial-geometry.md
-            - Factory: documentation/libraries/aircraftGeometry2/tutorial-factory.md
-            - Convert: documentation/libraries/aircraftGeometry2/tutorial-convert.md
+          - Tutorial: documentation/libraries/aircraftGeometry2/tutorial.md
           - API Reference:
             - aircraftGeometry2/classes.md
             - aircraftGeometry2/namespaces.md
             - aircraftGeometry2/files.md
             - aircraftGeometry2/functions.md
         - engine:
-          - Introduction: documentation/libraries/engine/index.md
+          - Introduction: documentation/libraries/engine/index.md 
     - Utilities: documentation/additional_software.md
     - Workflow: 'workflow.md' # Link to the workflow page.
   - Get Involved:
-- 
GitLab


From 9b27348ab974ee0d1f9fa4e4ac050f05d2a23289 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 11:49:58 +0100
Subject: [PATCH 25/33] fix path issues

---
 mkdocs.yml | 24 ++++++++++++------------
 1 file changed, 12 insertions(+), 12 deletions(-)

diff --git a/mkdocs.yml b/mkdocs.yml
index 1ca5700..ec5b769 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -82,7 +82,7 @@ plugins:
             OUTPUT_DIRECTORY: "./docs/propulsion_design"
             BIBTEX_FILE: docs/assets/bibtex/propulsion_design_literature.bib
         initial_sizing:
-          src-dirs: ../aircraft-design/initial_sizing/
+          src-dirs: aircraft-design/initial_sizing/src
           full-doc: true
           output: docs/initial_sizing
           doxy-cfg:
@@ -90,7 +90,7 @@ plugins:
             RECURSIVE: True
             EXTRACT_ALL: YES
         create_mission_xml:
-          src-dirs: ../aircraft-design/create_mission_xml/
+          src-dirs: aircraft-design/create_mission_xml/src
           full-doc: True
           output: docs/create_mission_xml
           doxy-cfg:
@@ -99,7 +99,7 @@ plugins:
             EXTRACT_ALL: YES
             BIBTEX_FILE: docs/assets/bibtex/create_mission_xml_literature.bib
         fuselage_design:
-          src-dirs: ../aircraft-design/fuselage_design/
+          src-dirs: aircraft-design/fuselage_design/src
           full-doc: true
           output: docs/fuselage_design
           doxy-cfg:
@@ -107,7 +107,7 @@ plugins:
             RECURSIVE: True
             EXTRACT_ALL: YES
         wing_design:
-          src-dirs: ../aircraft-design/wing_design/
+          src-dirs: aircraft-design/wing_design/src
           full-doc: True
           output: docs/wing_design
           doxy-cfg:
@@ -115,7 +115,7 @@ plugins:
             RECURSIVE: True
             EXTRACT_ALL: YES
         empennage_design:
-          src-dirs: ../aircraft-design/empennage_design/
+          src-dirs: aircraft-design/empennage_design/src
           full-doc: true
           output: docs/empennage_design
           doxy-cfg:
@@ -123,7 +123,7 @@ plugins:
             RECURSIVE: True
             EXTRACT_ALL: YES
         tank_design:
-          src-dirs: ../aircraft-design/tank_design/
+          src-dirs: aircraft-design/tank_design/src
           full-doc: true
           output: docs/tank_design
           doxy-cfg:
@@ -131,7 +131,7 @@ plugins:
             RECURSIVE: True
             EXTRACT_ALL: YES
         landing_gear_design:
-          src-dirs: ../aircraft-design/landing_gear_design/
+          src-dirs: aircraft-design/landing_gear_design/src
           full-doc: true
           output: docs/landing_gear_design
           doxy-cfg:
@@ -139,7 +139,7 @@ plugins:
             RECURSIVE: True
             EXTRACT_ALL: YES
         systems_design:
-          src-dirs: ../aircraft-design/systems_design/
+          src-dirs: aircraft-design/systems_design/src
           full-doc: true
           output: docs/systems_design
           doxy-cfg:
@@ -147,7 +147,7 @@ plugins:
             RECURSIVE: True
             EXTRACT_ALL: YES
         ecological_assessment:
-          src-dirs: ../aircraft-design/ecological_assessment/
+          src-dirs: aircraft-design/ecological_assessment/src
           full-doc: true
           output: docs/ecological_assessment
           doxy-cfg:
@@ -156,7 +156,7 @@ plugins:
             EXTRACT_ALL: YES
             BIBTEX_FILE: docs/assets/bibtex/ecological_assessment_literature.bib
         aerodynamic_analysis:
-          src-dirs: ../aircraft-design/aerodynamic_analysis/
+          src-dirs: aircraft-design/aerodynamic_analysis/src
           full-doc: true
           output: docs/aerodynamic_analysis
           doxy-cfg:
@@ -164,7 +164,7 @@ plugins:
             RECURSIVE: True
             EXTRACT_ALL: YES
         aircraftGeometry2:
-          src-dirs: ../aircraft-design/libs/aircraftGeometry2/
+          src-dirs: aircraft-design/libs/aircraftGeometry2/src
           full-doc: true
           output: docs/aircraftGeometry2
           doxy-cfg:
@@ -172,7 +172,7 @@ plugins:
             RECURSIVE: True
             EXTRACT_ALL: YES
         engine:
-          src-dirs: ../aircraft-design/libs/engine/
+          src-dirs: aircraft-design/libs/engine/src
           full-doc: true
           output: docs/engine
           doxy-cfg:
-- 
GitLab


From e196013a9ba079acf4d60d68a67840e74287fd5a Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 11:58:19 +0100
Subject: [PATCH 26/33] Fix path issues

---
 mkdocs.yml | 24 ++++++++++++------------
 1 file changed, 12 insertions(+), 12 deletions(-)

diff --git a/mkdocs.yml b/mkdocs.yml
index ec5b769..6ef133c 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -84,16 +84,16 @@ plugins:
         initial_sizing:
           src-dirs: aircraft-design/initial_sizing/src
           full-doc: true
-          output: docs/initial_sizing
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/initial_sizing"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
         create_mission_xml:
           src-dirs: aircraft-design/create_mission_xml/src
           full-doc: True
-          output: docs/create_mission_xml
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/create_mission_xml"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
@@ -101,84 +101,84 @@ plugins:
         fuselage_design:
           src-dirs: aircraft-design/fuselage_design/src
           full-doc: true
-          output: docs/fuselage_design
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/fuselage_design"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
         wing_design:
           src-dirs: aircraft-design/wing_design/src
           full-doc: True
-          output: docs/wing_design
           doxy-cfg:
+            OUTPUT_DIRECTORY: "./docs/wing_design"
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
         empennage_design:
           src-dirs: aircraft-design/empennage_design/src
           full-doc: true
-          output: docs/empennage_design
           doxy-cfg:
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
+            OUTPUT_DIRECTORY: "./docs/empennage_design"
         tank_design:
           src-dirs: aircraft-design/tank_design/src
           full-doc: true
-          output: docs/tank_design
           doxy-cfg:
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
+            OUTPUT_DIRECTORY: "./docs/tank_design"
         landing_gear_design:
           src-dirs: aircraft-design/landing_gear_design/src
           full-doc: true
-          output: docs/landing_gear_design
           doxy-cfg:
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
+            OUTPUT_DIRECTORY: "./docs/landing_gear_design"
         systems_design:
           src-dirs: aircraft-design/systems_design/src
           full-doc: true
-          output: docs/systems_design
           doxy-cfg:
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
+            OUTPUT_DIRECTORY: "./docs/systems_design"
         ecological_assessment:
           src-dirs: aircraft-design/ecological_assessment/src
           full-doc: true
-          output: docs/ecological_assessment
           doxy-cfg:
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
+            OUTPUT_DIRECTORY: "./docs/ecological_assessment"
             BIBTEX_FILE: docs/assets/bibtex/ecological_assessment_literature.bib
         aerodynamic_analysis:
           src-dirs: aircraft-design/aerodynamic_analysis/src
           full-doc: true
-          output: docs/aerodynamic_analysis
           doxy-cfg:
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
+            OUTPUT_DIRECTORY: "./docs/aerodynamic_analysis"
         aircraftGeometry2:
           src-dirs: aircraft-design/libs/aircraftGeometry2/src
           full-doc: true
-          output: docs/aircraftGeometry2
           doxy-cfg:
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
+            OUTPUT_DIRECTORY: "./docs/aircraftGeometry2"
         engine:
           src-dirs: aircraft-design/libs/engine/src
           full-doc: true
-          output: docs/engine
           doxy-cfg:
             FILE_PATTERNS: "*.cpp *.h"
             RECURSIVE: True
             EXTRACT_ALL: YES
+            OUTPUT_DIRECTORY: "./docs/engine"
 
   - glightbox                             # Plugin for lightbox-style image and content viewing.
 
-- 
GitLab


From d7df5ef70daa15fd330525c2990fb96ce29585b6 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 12:16:54 +0100
Subject: [PATCH 27/33] Deploy website only from 'develop'

---
 .gitlab-ci.yml | 8 ++------
 1 file changed, 2 insertions(+), 6 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 0c2c063..b20674b 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -76,9 +76,5 @@ pages:
     paths:
       - $CI_PROJECT_DIR/public
   rules:
-    - if: '$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH'  # Run when the commit is on the default branch
-      when: on_success  # Only run if the previous jobs are successful
-    - if: '$CI_COMMIT_BRANCH != $CI_DEFAULT_BRANCH'  # Allow manual triggers on non-default branches
-      when: manual  # Run only when triggered manually
-    - if: '$CI_PIPELINE_SOURCE == "trigger"'  # Triggered by another pipeline
-      when: on_success  # Run if the source pipeline was successful
\ No newline at end of file
+    - if: '$CI_COMMIT_BRANCH == "develop"'  # Only deploy from develop branch
+      when: on_success  # Run when previous jobs succeed
\ No newline at end of file
-- 
GitLab


From 796541bc4eec8857d37768b425c5210bc1f3e8c5 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 13:00:11 +0100
Subject: [PATCH 28/33] Add mission analysis project

---
 .gitlab-ci.yml | 8 ++++++--
 mkdocs.yml     | 8 ++++++++
 2 files changed, 14 insertions(+), 2 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index b20674b..0c2c063 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -76,5 +76,9 @@ pages:
     paths:
       - $CI_PROJECT_DIR/public
   rules:
-    - if: '$CI_COMMIT_BRANCH == "develop"'  # Only deploy from develop branch
-      when: on_success  # Run when previous jobs succeed
\ No newline at end of file
+    - if: '$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH'  # Run when the commit is on the default branch
+      when: on_success  # Only run if the previous jobs are successful
+    - if: '$CI_COMMIT_BRANCH != $CI_DEFAULT_BRANCH'  # Allow manual triggers on non-default branches
+      when: manual  # Run only when triggered manually
+    - if: '$CI_PIPELINE_SOURCE == "trigger"'  # Triggered by another pipeline
+      when: on_success  # Run if the source pipeline was successful
\ No newline at end of file
diff --git a/mkdocs.yml b/mkdocs.yml
index 6ef133c..7c3b769 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -179,6 +179,14 @@ plugins:
             RECURSIVE: True
             EXTRACT_ALL: YES
             OUTPUT_DIRECTORY: "./docs/engine"
+        mission_analysis:
+          src-dirs: aircraft-design/mission_analysis/src
+          full-doc: true
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+            OUTPUT_DIRECTORY: "./docs/mission_analysis"
 
   - glightbox                             # Plugin for lightbox-style image and content viewing.
 
-- 
GitLab


From 3831a23a5807fd3dba983f2bdf9fbf371cf31e05 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 14:06:32 +0100
Subject: [PATCH 29/33] Add projects for missing modules

---
 mkdocs.yml | 46 ++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 46 insertions(+)

diff --git a/mkdocs.yml b/mkdocs.yml
index f46509e..4ec32fe 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -187,6 +187,30 @@ plugins:
             RECURSIVE: True
             EXTRACT_ALL: YES
             OUTPUT_DIRECTORY: "./docs/mission_analysis"
+        constraint_analysis:
+          src-dirs: aircraft-design/constraint_analysis/src
+          full-doc: true
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+            OUTPUT_DIRECTORY: "./docs/constraint_analysis"
+        performance_assessment:
+          src-dirs: aircraft-design/performance_assessment/src
+          full-doc: true
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+            OUTPUT_DIRECTORY: "./docs/performance_assessment"
+        weight_and_balance_analysis:
+          src-dirs: aircraft-design/weight_and_balance_analysis/src
+          full-doc: true
+          doxy-cfg:
+            FILE_PATTERNS: "*.cpp *.h"
+            RECURSIVE: True
+            EXTRACT_ALL: YES
+            OUTPUT_DIRECTORY: "./docs/weight_and_balance_analysis"
 
   - glightbox                             # Plugin for lightbox-style image and content viewing.
 
@@ -354,9 +378,31 @@ nav:                                      # Customizes the main navigation struc
             - Introduction: documentation/analysis/aerodynamic_analysis/getting_started.md
             - Aerodynamic Principles: documentation/analysis/aerodynamic_analysis/aerodynamic_principles.md
             - Software Architecture: documentation/analysis/aerodynamic_analysis/software_architecture.md
+            - Changelog: documentation/analysis/aerodynamic_analysis/changelog.md
+            - API Reference:
+              - aerodynamic_analysis/classes.md
+              - aerodynamic_analysis/namespaces.md
+              - aerodynamic_analysis/files.md
+              - aerodynamic_analysis/functions.md
           - Constraint Analysis:
             - Introduction: documentation/analysis/constraint_analysis/index.md
             - Principles: documentation/analysis/constraint_analysis/principles.md
+            - Changelog: documentation/analysis/constraint_analysis/changelog.md
+            - API Reference:
+              - constraint_analysis/classes.md
+              - constraint_analysis/namespaces.md
+              - constraint_analysis/files.md
+              - constraint_analysis/functions.md
+          - Performance Assessment:
+            - Introduction: documentation/analysis/performance_assessment/index.md
+            - Getting Started: documentation/analysis/performance_assessment/getting_started.md
+            - Mission Methods: documentation/analysis/performance_assessment/methods.md
+            - Mission Steps: documentation/analysis/performance_assessment/mission_steps.md
+            - API Reference:
+              - performance_assessment/classes.md
+              - performance_assessment/namespaces.md
+              - performance_assessment/files.md
+              - performance_assessment/functions.md
     - Libraries:
         - documentation/libraries/index.md # Link to libraries overview.
         - AircraftGeometry2:
-- 
GitLab


From e168e90778c3d6cc385160a57373060894c17233 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 14:16:16 +0100
Subject: [PATCH 30/33] Remove cloning of libs

---
 .gitlab-ci.yml | 6 +-----
 1 file changed, 1 insertion(+), 5 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 0c2c063..5f23557 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -31,17 +31,13 @@ clone:
     - apk update && apk --no-cache add git doxygen graphviz ttf-freefont texmf-dist texmf-dist-latexextra texlive texlive-dvi
   script:
       # clone repos
-      - git clone https://gitlab-ci-token:${CI_JOB_TOKEN}@git.rwth-aachen.de/unicado/aircraft-design
-      - cd aircraft-design
-      # Clone libraries inside the aircraft-design directory
-      - git clone --recurse-submodules https://gitlab-ci-token:${CI_JOB_TOKEN}@git.rwth-aachen.de/unicado/libraries lib
+      - git clone --recurse-submodules https://gitlab-ci-token:${CI_JOB_TOKEN}@git.rwth-aachen.de/unicado/aircraft-design
       # Change to the project directory (useful for multi-directory repositories)
       - cd $CI_PROJECT_DIR
   artifacts:
     # Save the generated documentation as artifacts so they can be accessed later in the pipeline
     paths:
       - $CI_PROJECT_DIR/aircraft-design
-      - $CI_PROJECT_DIR/libraries
       - $CI_PROJECT_DIR/docs/documentation
   rules:
     - if: '$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH'  # Run when the commit is on the default branch
-- 
GitLab


From e91a5156065014b3fce6024479a6e71b37ce0659 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 14:31:39 +0100
Subject: [PATCH 31/33] Revert last commit

---
 .gitlab-ci.yml | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 5f23557..18051f0 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -31,13 +31,17 @@ clone:
     - apk update && apk --no-cache add git doxygen graphviz ttf-freefont texmf-dist texmf-dist-latexextra texlive texlive-dvi
   script:
       # clone repos
-      - git clone --recurse-submodules https://gitlab-ci-token:${CI_JOB_TOKEN}@git.rwth-aachen.de/unicado/aircraft-design
+      - git clone https://gitlab-ci-token:${CI_JOB_TOKEN}@git.rwth-aachen.de/unicado/aircraft-design
+      - cd aircraft-design
+      # Clone libraries inside the aircraft-design directory
+      - git clone --recurse-submodules https://gitlab-ci-token:${CI_JOB_TOKEN}@git.rwth-aachen.de/unicado/libraries lib
       # Change to the project directory (useful for multi-directory repositories)
       - cd $CI_PROJECT_DIR
   artifacts:
     # Save the generated documentation as artifacts so they can be accessed later in the pipeline
     paths:
       - $CI_PROJECT_DIR/aircraft-design
+      - $CI_PROJECT_DIR/libraries
       - $CI_PROJECT_DIR/docs/documentation
   rules:
     - if: '$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH'  # Run when the commit is on the default branch
@@ -45,8 +49,7 @@ clone:
     - if: '$CI_COMMIT_BRANCH != $CI_DEFAULT_BRANCH'  # Allow manual triggers on non-default branches
       when: manual  # Run only when triggered manually
     - if: '$CI_PIPELINE_SOURCE == "trigger"'  # Triggered by another pipeline
-      when: on_success  # Run if the source pipeline was successful
-
+      when: on_success  # Run if the source pipeline was successful    
 # === Build and deploy the website ===
 pages:
   image: python:latest
-- 
GitLab


From 755ee7a9044b7fd635fbc77d5d527de7c6f2f38d Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 14:41:57 +0100
Subject: [PATCH 32/33] remove API for libraries

---
 mkdocs.yml | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/mkdocs.yml b/mkdocs.yml
index 4ec32fe..7e67482 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -274,6 +274,11 @@ nav:                                      # Customizes the main navigation struc
             - Introduction: documentation/sizing/create_mission_xml/index.md
             - Getting Started: documentation/sizing/create_mission_xml/getting_started.md
             - Mission Steps: documentation/sizing/create_mission_xml/mission_steps.md
+            - API Reference:
+              - create_mission_xml/classes.md
+              - create_mission_xml/namespaces.md
+              - create_mission_xml/files.md
+              - create_mission_xml/functions.md
           - Fuselage Design:
             - Introduction: documentation/sizing/fuselage_design/index.md
             - Getting Started: documentation/sizing/fuselage_design/getting_started.md
@@ -409,11 +414,6 @@ nav:                                      # Customizes the main navigation struc
           - Introduction: documentation/libraries/aircraftGeometry2/index.md
           - Getting Started: documentation/libraries/aircraftGeometry2/getting-started.md
           - Tutorial: documentation/libraries/aircraftGeometry2/tutorial.md
-          - API Reference:
-            - aircraftGeometry2/classes.md
-            - aircraftGeometry2/namespaces.md
-            - aircraftGeometry2/files.md
-            - aircraftGeometry2/functions.md
         - engine:
           - Introduction: documentation/libraries/engine/index.md 
     - Utilities: documentation/additional_software.md
-- 
GitLab


From da6c64bf591ebc15e50a7843f1a5e9866c057f10 Mon Sep 17 00:00:00 2001
From: Alfin Johny <alfin.johny@tum.de>
Date: Fri, 28 Feb 2025 14:53:41 +0100
Subject: [PATCH 33/33] Fix links

---
 mkdocs.yml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/mkdocs.yml b/mkdocs.yml
index 7e67482..ccf4f51 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -383,7 +383,6 @@ nav:                                      # Customizes the main navigation struc
             - Introduction: documentation/analysis/aerodynamic_analysis/getting_started.md
             - Aerodynamic Principles: documentation/analysis/aerodynamic_analysis/aerodynamic_principles.md
             - Software Architecture: documentation/analysis/aerodynamic_analysis/software_architecture.md
-            - Changelog: documentation/analysis/aerodynamic_analysis/changelog.md
             - API Reference:
               - aerodynamic_analysis/classes.md
               - aerodynamic_analysis/namespaces.md
@@ -392,7 +391,6 @@ nav:                                      # Customizes the main navigation struc
           - Constraint Analysis:
             - Introduction: documentation/analysis/constraint_analysis/index.md
             - Principles: documentation/analysis/constraint_analysis/principles.md
-            - Changelog: documentation/analysis/constraint_analysis/changelog.md
             - API Reference:
               - constraint_analysis/classes.md
               - constraint_analysis/namespaces.md
-- 
GitLab