Running with gitlab-runner 17.2.0 (6428c288)
  on fst-122-docker-project t3_MF5Bob, system ID: r_eaLwIgkLO9Bq
Resolving secrets
section_start:1743422177:prepare_executor
Preparing the "docker" executor
Using Docker executor with image python:latest ...
Pulling docker image python:latest ...
Using docker image sha256:e6c8fe2e11080a1bc3b388b235b836d23ce4181cb0f5dda88f38d095b64187a9 for python:latest with digest python@sha256:8c55c44b9e81d537f8404d0000b7331863d134db87c1385dd0ec7fefff656495 ...
section_end:1743422178:prepare_executor
section_start:1743422178:prepare_script
Preparing environment
Running on runner-t3mf5bob-project-86897-concurrent-0 via c64b44a6c422...
section_end:1743422178:prepare_script
section_start:1743422178:get_sources
Getting source from Git repository
Fetching changes with git depth set to 20...
Reinitialized existing Git repository in /builds/rdm-tools/plot-serializer/.git/
Checking out d23f06b5 as detached HEAD (ref is main)...
Removing .cache/
Removing .ruff_cache/
Removing venv/

Skipping Git submodules setup
section_end:1743422180:get_sources
section_start:1743422180:restore_cache
Restoring cache
Checking cache for default-10-protected...
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted. 
Successfully extracted cache
section_end:1743422184:restore_cache
section_start:1743422184:step_script
Executing "step_script" stage of the job script
Using docker image sha256:e6c8fe2e11080a1bc3b388b235b836d23ce4181cb0f5dda88f38d095b64187a9 for python:latest with digest python@sha256:8c55c44b9e81d537f8404d0000b7331863d134db87c1385dd0ec7fefff656495 ...
$ python --version
Python 3.13.2
$ pip install virtualenv
Collecting virtualenv
  Using cached virtualenv-20.29.3-py3-none-any.whl.metadata (4.5 kB)
Collecting distlib<1,>=0.3.7 (from virtualenv)
  Using cached distlib-0.3.9-py2.py3-none-any.whl.metadata (5.2 kB)
Collecting filelock<4,>=3.12.2 (from virtualenv)
  Using cached filelock-3.18.0-py3-none-any.whl.metadata (2.9 kB)
Collecting platformdirs<5,>=3.9.1 (from virtualenv)
  Using cached platformdirs-4.3.7-py3-none-any.whl.metadata (11 kB)
Using cached virtualenv-20.29.3-py3-none-any.whl (4.3 MB)
Using cached distlib-0.3.9-py2.py3-none-any.whl (468 kB)
Using cached filelock-3.18.0-py3-none-any.whl (16 kB)
Using cached platformdirs-4.3.7-py3-none-any.whl (18 kB)
Installing collected packages: distlib, platformdirs, filelock, virtualenv
Successfully installed distlib-0.3.9 filelock-3.18.0 platformdirs-4.3.7 virtualenv-20.29.3
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning.

[notice] A new release of pip is available: 24.3.1 -> 25.0.1
[notice] To update, run: pip install --upgrade pip
$ virtualenv venv
created virtual environment CPython3.13.2.final.0-64 in 218ms
  creator CPython3Posix(dest=/builds/rdm-tools/plot-serializer/venv, clear=False, no_vcs_ignore=False, global=False)
  seeder FromAppData(download=False, pip=bundle, via=copy, app_data_dir=/root/.local/share/virtualenv)
    added seed packages: MarkupSafe==3.0.2, accessible_pygments==0.0.5, alabaster==1.0.0, annotated_types==0.7.0, arcp==0.2.1, attrs==25.3.0, autodoc_pydantic==2.2.0, babel==2.17.0, beautifulsoup4==4.13.3, certifi==2025.1.31, charset_normalizer==3.4.1, click==8.1.8, contourpy==1.3.1, cycler==0.12.1, debugpy==1.8.13, docutils==0.21.2, fonttools==4.56.0, hypothesis==6.130.5, idna==3.10, imagesize==1.4.1, iniconfig==2.1.0, jinja2==3.1.6, kiwisolver==1.4.8, matplotlib==3.10.1, mypy==1.15.0, mypy_extensions==1.0.0, numpy==2.2.4, packaging==24.2, pillow==11.1.0, pip==25.0.1, pluggy==1.5.0, pydantic==2.11.1, pydantic_core==2.33.0, pydantic_settings==2.8.1, pydata_sphinx_theme==0.16.1, pygments==2.19.1, pyparsing==3.2.3, pytest==8.3.5, python_dateutil==2.9.0.post0, python_dotenv==1.1.0, rdflib==7.1.4, requests==2.32.3, rocrate==0.13.0, roman_numerals_py==3.1.0, ruff==0.11.2, six==1.17.0, snowballstemmer==2.2.0, sortedcontainers==2.4.0, soupsieve==2.6, sphinx==8.2.3, sphinxcontrib_applehelp==2.0.0, sphinxcontrib_devhelp==2.0.0, sphinxcontrib_htmlhelp==2.1.0, sphinxcontrib_jsmath==1.0.1, sphinxcontrib_qthelp==2.0.0, sphinxcontrib_serializinghtml==2.0.0, types_docutils==0.21.0.20241128, typing_extensions==4.13.0, typing_inspection==0.4.0, urllib3==2.3.0
  activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator
$ source venv/bin/activate
$ pip install -r requirements.txt
Requirement already satisfied: numpy in ./venv/lib/python3.13/site-packages (from -r requirements.txt (line 5)) (2.2.4)
Requirement already satisfied: matplotlib>=3.9 in ./venv/lib/python3.13/site-packages (from -r requirements.txt (line 6)) (3.10.1)
Requirement already satisfied: pydantic in ./venv/lib/python3.13/site-packages (from -r requirements.txt (line 7)) (2.11.1)
Requirement already satisfied: rdflib in ./venv/lib/python3.13/site-packages (from -r requirements.txt (line 8)) (7.1.4)
Requirement already satisfied: rocrate in ./venv/lib/python3.13/site-packages (from -r requirements.txt (line 9)) (0.13.0)
Requirement already satisfied: sphinx in ./venv/lib/python3.13/site-packages (from -r requirements.txt (line 12)) (8.2.3)
Requirement already satisfied: pydata-sphinx-theme in ./venv/lib/python3.13/site-packages (from -r requirements.txt (line 13)) (0.16.1)
Requirement already satisfied: autodoc_pydantic in ./venv/lib/python3.13/site-packages (from -r requirements.txt (line 14)) (2.2.0)
Requirement already satisfied: ruff in ./venv/lib/python3.13/site-packages (from -r requirements.txt (line 17)) (0.11.2)
Requirement already satisfied: mypy in ./venv/lib/python3.13/site-packages (from -r requirements.txt (line 20)) (1.15.0)
Requirement already satisfied: types-docutils in ./venv/lib/python3.13/site-packages (from -r requirements.txt (line 21)) (0.21.0.20241128)
Requirement already satisfied: pytest in ./venv/lib/python3.13/site-packages (from -r requirements.txt (line 24)) (8.3.5)
Requirement already satisfied: hypothesis in ./venv/lib/python3.13/site-packages (from -r requirements.txt (line 25)) (6.130.5)
Requirement already satisfied: debugpy in ./venv/lib/python3.13/site-packages (from -r requirements.txt (line 28)) (1.8.13)
Requirement already satisfied: contourpy>=1.0.1 in ./venv/lib/python3.13/site-packages (from matplotlib>=3.9->-r requirements.txt (line 6)) (1.3.1)
Requirement already satisfied: cycler>=0.10 in ./venv/lib/python3.13/site-packages (from matplotlib>=3.9->-r requirements.txt (line 6)) (0.12.1)
Requirement already satisfied: fonttools>=4.22.0 in ./venv/lib/python3.13/site-packages (from matplotlib>=3.9->-r requirements.txt (line 6)) (4.56.0)
Requirement already satisfied: kiwisolver>=1.3.1 in ./venv/lib/python3.13/site-packages (from matplotlib>=3.9->-r requirements.txt (line 6)) (1.4.8)
Requirement already satisfied: packaging>=20.0 in ./venv/lib/python3.13/site-packages (from matplotlib>=3.9->-r requirements.txt (line 6)) (24.2)
Requirement already satisfied: pillow>=8 in ./venv/lib/python3.13/site-packages (from matplotlib>=3.9->-r requirements.txt (line 6)) (11.1.0)
Requirement already satisfied: pyparsing>=2.3.1 in ./venv/lib/python3.13/site-packages (from matplotlib>=3.9->-r requirements.txt (line 6)) (3.2.3)
Requirement already satisfied: python-dateutil>=2.7 in ./venv/lib/python3.13/site-packages (from matplotlib>=3.9->-r requirements.txt (line 6)) (2.9.0.post0)
Requirement already satisfied: annotated-types>=0.6.0 in ./venv/lib/python3.13/site-packages (from pydantic->-r requirements.txt (line 7)) (0.7.0)
Requirement already satisfied: pydantic-core==2.33.0 in ./venv/lib/python3.13/site-packages (from pydantic->-r requirements.txt (line 7)) (2.33.0)
Requirement already satisfied: typing-extensions>=4.12.2 in ./venv/lib/python3.13/site-packages (from pydantic->-r requirements.txt (line 7)) (4.13.0)
Requirement already satisfied: typing-inspection>=0.4.0 in ./venv/lib/python3.13/site-packages (from pydantic->-r requirements.txt (line 7)) (0.4.0)
Requirement already satisfied: requests in ./venv/lib/python3.13/site-packages (from rocrate->-r requirements.txt (line 9)) (2.32.3)
Requirement already satisfied: arcp==0.2.1 in ./venv/lib/python3.13/site-packages (from rocrate->-r requirements.txt (line 9)) (0.2.1)
Requirement already satisfied: jinja2 in ./venv/lib/python3.13/site-packages (from rocrate->-r requirements.txt (line 9)) (3.1.6)
Requirement already satisfied: click in ./venv/lib/python3.13/site-packages (from rocrate->-r requirements.txt (line 9)) (8.1.8)
Requirement already satisfied: sphinxcontrib-applehelp>=1.0.7 in ./venv/lib/python3.13/site-packages (from sphinx->-r requirements.txt (line 12)) (2.0.0)
Requirement already satisfied: sphinxcontrib-devhelp>=1.0.6 in ./venv/lib/python3.13/site-packages (from sphinx->-r requirements.txt (line 12)) (2.0.0)
Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.6 in ./venv/lib/python3.13/site-packages (from sphinx->-r requirements.txt (line 12)) (2.1.0)
Requirement already satisfied: sphinxcontrib-jsmath>=1.0.1 in ./venv/lib/python3.13/site-packages (from sphinx->-r requirements.txt (line 12)) (1.0.1)
Requirement already satisfied: sphinxcontrib-qthelp>=1.0.6 in ./venv/lib/python3.13/site-packages (from sphinx->-r requirements.txt (line 12)) (2.0.0)
Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.9 in ./venv/lib/python3.13/site-packages (from sphinx->-r requirements.txt (line 12)) (2.0.0)
Requirement already satisfied: Pygments>=2.17 in ./venv/lib/python3.13/site-packages (from sphinx->-r requirements.txt (line 12)) (2.19.1)
Requirement already satisfied: docutils<0.22,>=0.20 in ./venv/lib/python3.13/site-packages (from sphinx->-r requirements.txt (line 12)) (0.21.2)
Requirement already satisfied: snowballstemmer>=2.2 in ./venv/lib/python3.13/site-packages (from sphinx->-r requirements.txt (line 12)) (2.2.0)
Requirement already satisfied: babel>=2.13 in ./venv/lib/python3.13/site-packages (from sphinx->-r requirements.txt (line 12)) (2.17.0)
Requirement already satisfied: alabaster>=0.7.14 in ./venv/lib/python3.13/site-packages (from sphinx->-r requirements.txt (line 12)) (1.0.0)
Requirement already satisfied: imagesize>=1.3 in ./venv/lib/python3.13/site-packages (from sphinx->-r requirements.txt (line 12)) (1.4.1)
Requirement already satisfied: roman-numerals-py>=1.0.0 in ./venv/lib/python3.13/site-packages (from sphinx->-r requirements.txt (line 12)) (3.1.0)
Requirement already satisfied: beautifulsoup4 in ./venv/lib/python3.13/site-packages (from pydata-sphinx-theme->-r requirements.txt (line 13)) (4.13.3)
Requirement already satisfied: accessible-pygments in ./venv/lib/python3.13/site-packages (from pydata-sphinx-theme->-r requirements.txt (line 13)) (0.0.5)
Requirement already satisfied: pydantic-settings<3.0.0,>=2.0 in ./venv/lib/python3.13/site-packages (from autodoc_pydantic->-r requirements.txt (line 14)) (2.8.1)
Requirement already satisfied: mypy_extensions>=1.0.0 in ./venv/lib/python3.13/site-packages (from mypy->-r requirements.txt (line 20)) (1.0.0)
Requirement already satisfied: iniconfig in ./venv/lib/python3.13/site-packages (from pytest->-r requirements.txt (line 24)) (2.1.0)
Requirement already satisfied: pluggy<2,>=1.5 in ./venv/lib/python3.13/site-packages (from pytest->-r requirements.txt (line 24)) (1.5.0)
Requirement already satisfied: attrs>=22.2.0 in ./venv/lib/python3.13/site-packages (from hypothesis->-r requirements.txt (line 25)) (25.3.0)
Requirement already satisfied: sortedcontainers<3.0.0,>=2.1.0 in ./venv/lib/python3.13/site-packages (from hypothesis->-r requirements.txt (line 25)) (2.4.0)
Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.13/site-packages (from jinja2->rocrate->-r requirements.txt (line 9)) (3.0.2)
Requirement already satisfied: python-dotenv>=0.21.0 in ./venv/lib/python3.13/site-packages (from pydantic-settings<3.0.0,>=2.0->autodoc_pydantic->-r requirements.txt (line 14)) (1.1.0)
Requirement already satisfied: six>=1.5 in ./venv/lib/python3.13/site-packages (from python-dateutil>=2.7->matplotlib>=3.9->-r requirements.txt (line 6)) (1.17.0)
Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.13/site-packages (from requests->rocrate->-r requirements.txt (line 9)) (3.4.1)
Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.13/site-packages (from requests->rocrate->-r requirements.txt (line 9)) (3.10)
Requirement already satisfied: urllib3<3,>=1.21.1 in ./venv/lib/python3.13/site-packages (from requests->rocrate->-r requirements.txt (line 9)) (2.3.0)
Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.13/site-packages (from requests->rocrate->-r requirements.txt (line 9)) (2025.1.31)
Requirement already satisfied: soupsieve>1.2 in ./venv/lib/python3.13/site-packages (from beautifulsoup4->pydata-sphinx-theme->-r requirements.txt (line 13)) (2.6)
$ mypy --exclude venv .
Success: no issues found in 34 source files
section_end:1743422205:step_script
section_start:1743422205:archive_cache
Saving cache for successful job
Creating cache default-10-protected...
.cache/pip: found 1082 matching artifact files and directories 
venv/: found 13468 matching artifact files and directories 
No URL provided, cache will not be uploaded to shared cache server. Cache will be stored only locally. 
Created cache
section_end:1743422219:archive_cache
section_start:1743422219:cleanup_file_variables
Cleaning up project directory and file based variables
section_end:1743422219:cleanup_file_variables
Job succeeded