diff --git a/+PlotID/createLinkedHDF5.m b/+PlotID/createLinkedHDF5.m index c7caae2e5204e8e6b2ce98f5930a3e1104d82348..547240bf0575e72b6ad84b940bddde9eeb0832dc 100644 --- a/+PlotID/createLinkedHDF5.m +++ b/+PlotID/createLinkedHDF5.m @@ -12,11 +12,17 @@ end [~,filename,ext] = fileparts(SourceFile); +% create GroupName to avoid internal path issues on linux/unix systems +GroupName = split(SourceFile,filesep); +% Using windows fileseperator for the object name +GroupName = join(GroupName,'\'); +GroupName = GroupName{:}; + try fid = H5F.create(fullfile(TargetPath,[filename,ext])); %create External Link to Sourcefile in the Group linkToExternal - H5L.create_external(['..',SourceFile],'/',fid, SourceFile ,plist_id,plist_id); - %H5L.create_external(['..,filesep,'data',SourceFile],'/',fid, SourceFile ,plist_id,plist_id); %original + H5L.create_external(['..',SourceFile],'/',fid, GroupName ,plist_id,plist_id); + %H5L.create_external(['..,filesep,'data',SourceFile],'/',fid, GroupName ,plist_id,plist_id); %original H5F.close(fid); disp([fullfile(TargetPath,[filename,ext]),' created']); status = 1;