Refactoring: Add ClusteringAlgorithm arguments as state

src/main/java/de/monticore/lang/monticar/generator/middleware/cli/algorithms/DBScanCliParameters.java

@@ -24,7 +24,9 @@ public class DBScanCliParameters extends AlgorithmCliParameters {
 
     @Override
     public ClusteringAlgorithm asClustringAlgorithm() {
-        return new DBSCANClusteringAlgorithm();
+        DBSCANClusteringAlgorithm dbscanClusteringAlgorithm = new DBSCANClusteringAlgorithm();
+        dbscanClusteringAlgorithm.setArgs(asAlgorithmArgs());
+        return dbscanClusteringAlgorithm;
     }
 
     @Override
@@ -55,4 +57,12 @@ public class DBScanCliParameters extends AlgorithmCliParameters {
     public Optional<Double> getRadius() {
         return Optional.ofNullable(radius);
     }
+
+    public void setMinPts(Integer min_pts) {
+        this.min_pts = min_pts;
+    }
+
+    public void setRadius(Double radius) {
+        this.radius = radius;
+    }
 }

src/main/java/de/monticore/lang/monticar/generator/middleware/cli/algorithms/MarkovCliParameters.java

@@ -24,7 +24,9 @@ public class MarkovCliParameters extends AlgorithmCliParameters {
 
     @Override
     public ClusteringAlgorithm asClustringAlgorithm() {
-        return new MarkovClusteringAlgorithm();
+        MarkovClusteringAlgorithm markovClusteringAlgorithm = new MarkovClusteringAlgorithm();
+        markovClusteringAlgorithm.setArgs(asAlgorithmArgs());
+        return markovClusteringAlgorithm;
     }
 
     @Override
@@ -69,4 +71,20 @@ public class MarkovCliParameters extends AlgorithmCliParameters {
     public Optional<Double> getZeroMax() {
         return Optional.ofNullable(zero_max);
     }
+
+    public void setMaxResidual(Double max_residual) {
+        this.max_residual = max_residual;
+    }
+
+    public void setGammaExp(Double gamma_exp) {
+        this.gamma_exp = gamma_exp;
+    }
+
+    public void setLoopGain(Double loop_gain) {
+        this.loop_gain = loop_gain;
+    }
+
+    public void setZeroMax(Double zero_max) {
+        this.zero_max = zero_max;
+    }
 }

src/main/java/de/monticore/lang/monticar/generator/middleware/cli/algorithms/SpectralClusteringCliParameters.java

@@ -24,7 +24,9 @@ public class SpectralClusteringCliParameters extends AlgorithmCliParameters {
 
     @Override
     public ClusteringAlgorithm asClustringAlgorithm() {
-        return new SpectralClusteringAlgorithm();
+        SpectralClusteringAlgorithm clusteringAlgorithm = new SpectralClusteringAlgorithm();
+        clusteringAlgorithm.setArgs(asAlgorithmArgs());
+        return clusteringAlgorithm;
     }
 
     @Override
@@ -68,4 +70,16 @@ public class SpectralClusteringCliParameters extends AlgorithmCliParameters {
     public Optional<Double> getSigma() {
         return Optional.ofNullable(sigma);
     }
+
+    public void setNumberOfClusters(Integer numberOfClusters) {
+        this.numberOfClusters = numberOfClusters;
+    }
+
+    public void setL(Integer l) {
+        this.l = l;
+    }
+
+    public void setSigma(Double sigma) {
+        this.sigma = sigma;
+    }
 }

src/main/java/de/monticore/lang/monticar/generator/middleware/clustering/ClusteringAlgorithm.java

@@ -7,5 +7,13 @@ import java.util.Set;
 
 // product if for clustering factory
 public interface ClusteringAlgorithm {
-    public List<Set<EMAComponentInstanceSymbol>> cluster(EMAComponentInstanceSymbol component, Object... args);
+    List<Set<EMAComponentInstanceSymbol>> cluster(EMAComponentInstanceSymbol component, Object... args);
+
+    //TODO: add arguments as typed state of the algorithms
+    default List<Set<EMAComponentInstanceSymbol>> cluster(EMAComponentInstanceSymbol component){
+        return cluster(component ,getArgs());
+    }
+
+    List<Object> getArgs();
+
 }

src/main/java/de/monticore/lang/monticar/generator/middleware/clustering/algorithms/AffinityPropagationAlgorithm.java

@@ -13,6 +13,17 @@ import java.util.*;
 
 public class AffinityPropagationAlgorithm implements ClusteringAlgorithm {
 
+    private List<Object> args;
+
+    public void setArgs(List<Object> args) {
+        this.args = args;
+    }
+
+    @Override
+    public List<Object> getArgs() {
+        return args;
+    }
+
     @Override
     public List<Set<EMAComponentInstanceSymbol>> cluster(EMAComponentInstanceSymbol component, Object... args) {
 

src/main/java/de/monticore/lang/monticar/generator/middleware/clustering/algorithms/DBSCANClusteringAlgorithm.java

@@ -11,6 +11,17 @@ import java.util.*;
 
 // DBSCAN clusterer product implementation
 public class DBSCANClusteringAlgorithm implements ClusteringAlgorithm {
+    private List<Object> args;
+
+    public void setArgs(List<Object> args) {
+        this.args = args;
+    }
+
+    @Override
+    public List<Object> getArgs() {
+        return args;
+    }
+
     @Override
     public List<Set<EMAComponentInstanceSymbol>> cluster(EMAComponentInstanceSymbol component, Object... args) {
 

src/main/java/de/monticore/lang/monticar/generator/middleware/clustering/algorithms/MarkovClusteringAlgorithm.java

@@ -15,6 +15,17 @@ import java.util.*;
 
 // markov mcl clusterer product implementation
 public class MarkovClusteringAlgorithm implements ClusteringAlgorithm {
+    private List<Object> args;
+
+    public void setArgs(List<Object> args) {
+        this.args = args;
+    }
+
+    @Override
+    public List<Object> getArgs() {
+        return args;
+    }
+
 
     private static Dataset[] getClustering(Dataset data, SparseMatrix matrix) {
         int[] sparseMatrixSize = matrix.getSize();

src/main/java/de/monticore/lang/monticar/generator/middleware/clustering/algorithms/SpectralClusteringAlgorithm.java

@@ -11,6 +11,17 @@ import java.util.*;
 
 // spectral clusterer product implementation
 public class SpectralClusteringAlgorithm implements ClusteringAlgorithm {
+    private List<Object> args;
+
+    public void setArgs(List<Object> args) {
+        this.args = args;
+    }
+
+    @Override
+    public List<Object> getArgs() {
+        return args;
+    }
+
     @Override
     public List<Set<EMAComponentInstanceSymbol>> cluster(EMAComponentInstanceSymbol component, Object... args) {