Move clust4j from helpers to com package

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/kernel/LaplacianKernel.java → src/main/java/com/clust4j/kernel/LaplacianKernel.java

@@ -13,7 +13,7 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.kernel;
+package com.clust4j.kernel;
 
 import org.apache.commons.math3.util.FastMath;
 

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/kernel/LinearKernel.java → src/main/java/com/clust4j/kernel/LinearKernel.java

@@ -13,9 +13,9 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.kernel;
+package com.clust4j.kernel;
 
-import de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.utils.VecUtils;
+import com.clust4j.utils.VecUtils;
 
 /**
  * The Linear kernel is the simplest kernel function. 

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/kernel/LogKernel.java → src/main/java/com/clust4j/kernel/LogKernel.java

@@ -13,7 +13,7 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.kernel;
+package com.clust4j.kernel;
 
 import org.apache.commons.math3.util.FastMath;
 

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/kernel/MinKernel.java → src/main/java/com/clust4j/kernel/MinKernel.java

@@ -13,9 +13,9 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.kernel;
+package com.clust4j.kernel;
 
-import de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.utils.VecUtils;
+import com.clust4j.utils.VecUtils;
 
 /**
  * The Histogram Intersection Kernel is also known as the 

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/kernel/MultiquadricKernel.java → src/main/java/com/clust4j/kernel/MultiquadricKernel.java

@@ -13,7 +13,7 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.kernel;
+package com.clust4j.kernel;
 
 import org.apache.commons.math3.util.FastMath;
 

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/kernel/PolynomialKernel.java → src/main/java/com/clust4j/kernel/PolynomialKernel.java

@@ -13,11 +13,11 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.kernel;
+package com.clust4j.kernel;
 
 import org.apache.commons.math3.util.FastMath;
 
-import de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.utils.VecUtils;
+import com.clust4j.utils.VecUtils;
 
 /**
  * The Polynomial kernel is a non-stationary kernel. 

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/kernel/PowerKernel.java → src/main/java/com/clust4j/kernel/PowerKernel.java

@@ -13,7 +13,7 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.kernel;
+package com.clust4j.kernel;
 
 import org.apache.commons.math3.util.FastMath;
 

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/kernel/RadialBasisKernel.java → src/main/java/com/clust4j/kernel/RadialBasisKernel.java

@@ -13,7 +13,7 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.kernel;
+package com.clust4j.kernel;
 
 import org.apache.commons.math3.util.FastMath;
 

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/kernel/RationalQuadraticKernel.java → src/main/java/com/clust4j/kernel/RationalQuadraticKernel.java

@@ -13,7 +13,7 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.kernel;
+package com.clust4j.kernel;
 
 import org.apache.commons.math3.util.FastMath;
 

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/kernel/SphericalKernel.java → src/main/java/com/clust4j/kernel/SphericalKernel.java

@@ -13,7 +13,7 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.kernel;
+package com.clust4j.kernel;
 
 import org.apache.commons.math3.util.FastMath;
 

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/kernel/SplineKernel.java → src/main/java/com/clust4j/kernel/SplineKernel.java

@@ -13,12 +13,11 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.kernel;
+package com.clust4j.kernel;
 
+import com.clust4j.utils.VecUtils;
 import org.apache.commons.math3.util.FastMath;
 
-import de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.utils.VecUtils;
-
 /**
  * The Spline kernel is given as a piece-wise cubic polynomial, 
  * as derived in the works by <a href="http://www.svms.org/tutorials/Gunn1998.pdf">Gunn (1998)</a>.

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/log/Log.java → src/main/java/com/clust4j/log/Log.java

@@ -13,9 +13,9 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.log;
+package com.clust4j.log;
 
-import static de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.log.Log.Tag.*;
+import static com.clust4j.log.Log.Tag.*;
 
 import java.io.*;
 import java.net.URI;

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/log/LogProperties.java → src/main/java/com/clust4j/log/LogProperties.java

@@ -13,7 +13,7 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.log;
+package com.clust4j.log;
 
 import java.net.URI;
 import java.net.URISyntaxException;

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/log/LogTimeFormatter.java → src/main/java/com/clust4j/log/LogTimeFormatter.java

@@ -13,7 +13,7 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.log;
+package com.clust4j.log;
 
 import java.util.concurrent.TimeUnit;
 

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/log/LogTimer.java → src/main/java/com/clust4j/log/LogTimer.java

@@ -13,7 +13,7 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.log;
+package com.clust4j.log;
 
 import java.text.SimpleDateFormat;
 import java.util.Date;

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/log/Loggable.java → src/main/java/com/clust4j/log/Loggable.java

@@ -13,7 +13,7 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.log;
+package com.clust4j.log;
 
 public interface Loggable {
 	public void error(String msg);

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/log/Timer.java → src/main/java/com/clust4j/log/Timer.java

@@ -13,7 +13,7 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.log;
+package com.clust4j.log;
 
 public interface Timer {
 	public long time();

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/metrics/pairwise/BooleanSimilarity.java → src/main/java/com/clust4j/metrics/pairwise/BooleanSimilarity.java

@@ -13,10 +13,10 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.metrics.pairwise;
+package com.clust4j.metrics.pairwise;
 
-import de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.utils.QuadTup;
-import de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.utils.VecUtils;
+import com.clust4j.utils.QuadTup;
+import com.clust4j.utils.VecUtils;
 
 /**
  * A helper class for boolean dissimilarity metrics like {@link Distance#RUSSELL_RAO},

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/metrics/pairwise/Distance.java → src/main/java/com/clust4j/metrics/pairwise/Distance.java

@@ -13,15 +13,14 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.metrics.pairwise;
+package com.clust4j.metrics.pairwise;
 
 import java.util.ArrayList;
 import java.util.Collection;
 
+import com.clust4j.utils.VecUtils;
 import org.apache.commons.math3.util.FastMath;
 
-import de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.utils.VecUtils;
-
 public enum Distance implements DistanceMetric, java.io.Serializable {
 	HAMMING {
 		

src/main/java/de/monticore/lang/monticar/generator/middleware/helpers/AffinityPropagationHelper/clust4j/metrics/pairwise/DistanceMetric.java → src/main/java/com/clust4j/metrics/pairwise/DistanceMetric.java

@@ -13,7 +13,7 @@
  *    See the License for the specific language governing permissions and
  *    limitations under the License.
  *******************************************************************************/
-package de.monticore.lang.monticar.generator.middleware.helpers.AffinityPropagationHelper.clust4j.metrics.pairwise;
+package com.clust4j.metrics.pairwise;
 
 public interface DistanceMetric extends GeometricallySeparable {
 	public static final double DEFAULT_P = 2.0;