diff --git a/python/loadleveller/mcextract.py b/python/loadleveller/mcextract.py index 0a01e8e32e80e991fcca76f28e82424683897bc2..7ccc20112b102da6ba62e61eaa4fe4ca566cff7a 100644 --- a/python/loadleveller/mcextract.py +++ b/python/loadleveller/mcextract.py @@ -10,13 +10,13 @@ class Observable: self.rebinning_bin_count = np.zeros(num_tasks) self.autocorrelation_time = np.zeros(num_tasks)+np.nan - self.mean = [None for i in range(num_tasks)] - self.error = [None for i in range(num_tasks)] + self.mean = [np.array([np.nan]) for i in range(num_tasks)] + self.error = [np.array([np.nan]) for i in range(num_tasks)] class MCArchive: def __init__(self, filename): with open(filename, 'r') as f: - doc = yaml.safe_load(f) + doc = yaml.load(f, Loader=yaml.CSafeLoader) param_names = set(sum([list(task['parameters'].keys()) for task in doc], [])) observable_names = set(sum([list(task['results'].keys()) for task in doc], [])) @@ -67,8 +67,8 @@ class MCArchive: selection.mean = np.array(selection.mean) selection.error = np.array(selection.error) - if selection.mean.shape[1] == 1: - selection.mean = selection.mean.flatten() - selection.error = selection.error.flatten() + if selection.mean.shape[1] == 1: + selection.mean = selection.mean.flatten() + selection.error = selection.error.flatten() return selection