diff --git a/profiles/fastq/index.ttl b/profiles/fastq/index.ttl new file mode 100644 index 0000000000000000000000000000000000000000..decb8d577a4929475b222d972d8b8d437b2bc258 --- /dev/null +++ b/profiles/fastq/index.ttl @@ -0,0 +1,156 @@ +@base <https://purl.org/coscine/ap/fastq/> . + +@prefix dcterms: <http://purl.org/dc/terms/> . +@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . +@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . +@prefix sh: <http://www.w3.org/ns/shacl#> . +@prefix xsd: <http://www.w3.org/2001/XMLSchema#> . +@prefix dash: <http://datashapes.org/dash#> . +@prefix qudt: <http://qudt.org/schema/qudt/> . +@prefix unit: <http://qudt.org/vocab/unit/> . + +@prefix fastq: <https://purl.org/coscine/ap/fastq/> . +@prefix fastqterms: <http://purl.org/coscine/terms/fastq/> . +@prefix MIXS:<https://w3id.org/mixs/terms/0001107> . + +<https://purl.org/coscine/ap/fastq/> + dcterms:title "FASTQ Application Profile"@en ; + dcterms:description "A set of metadata to describe FASTQ generated by sequencers"@en ; + dcterms:creator "Charlie Pauvert"@en ; + dcterms:created "2022-06-27"^^xsd:date ; + dcterms:license <http://spdx.org/licenses/MIT> ; + dcterms:publisher <https://itc.rwth-aachen.de/> ; + dcterms:rights "Copyright © 2022 Institute of Medical Microbiology, University Hospital of RWTH, Aachen" ; + + a sh:NodeShape ; + sh:targetClass <https://purl.org/coscine/ap/fastq/> ; + + sh:property [ + sh:path rdf:type ; + ] ; + + sh:property fastq:sampleName ; + sh:property fastq:sequencingMethod ; + sh:property fastq:libraryLayout ; + sh:property fastq:librarySource ; + sh:property fastq:librarySelection ; + sh:property fastq:libraryStrategy ; + sh:property fastq:isForward ; + sh:property fastq:fileChecksum ; + sh:property fastq:sequenceCount ; + sh:property fastq:basepairsCount ; + sh:property fastq:averageSequenceLength ; + sh:property fastq:filteredSequenceCount ; + sh:property fastq:filteredBasepairsCount . + +fastq:sampleName + sh:path MIXS:sample_name ; + sh:order 0 ; + sh:description "The identifier given to the sequenced sample"@en ; + sh:datatype xsd:string ; + sh:minCount 1 ; + sh:minCount 1 ; + sh:name "Sample Name"@en . + +fastq:sequencingMethod + sh:path MIXS:seq_meth ; + sh:order 1 ; + sh:description "Sequencing machine used to generate the FASTQ file. Where possible the term should be taken from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103)"@en ; + sh:class <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> ; + sh:minCount 1 ; + sh:name "Sequencing Method"@en . + +fastq:libraryLayout + sh:path MIXS:lib_layout ; + sh:order 2 ; + sh:description "Layout of the library (e.g., single-end, paired-end)"@en ; + sh:class <http://purl.org/coscine/vocabularies/fastq/libraryLayout> ; + sh:minCount 1 ; + sh:name "Library layout"@en . + +fastq:librarySource + sh:path fastqterms:lib_source ; + sh:order 3 ; + sh:description "Source of library (e.g., genomic, metagenomic)"@en ; + sh:class <http://purl.org/coscine/vocabularies/fastq/librarySource> ; + sh:minCount 1 ; + sh:name "Library source"@en . + +fastq:librarySelection + sh:path fastqterms:lib_selection ; + sh:order 4 ; + sh:description "Selection used for the library construction (e.g., random, PCR). If no selection was used, use random"@en ; + sh:class <http://purl.org/coscine/vocabularies/fastq/librarySelection> ; + sh:minCount 1 ; + sh:name "Library selection"@en . + +fastq:libraryStrategy + sh:path fastqterms:lib_strategy ; + sh:order 5 ; + sh:description "Strategy used for the library construction (e.g., WGS, amplicon)"@en ; + sh:class <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> ; + sh:minCount 1 ; + sh:name "Library strategy"@en . + +fastq:isForward + sh:path fastqterms:is_forward ; + sh:order 6 ; + sh:description "Are the sequences in the FASTQ file in the forward orientation?"@en ; + sh:datatype xsd:boolean ; + sh:minCount 1 ; + sh:minCount 1 ; + sh:name "Forward-oriented sequences?"@en . + +fastq:fileChecksum + sh:path fastqterms:checksum ; + sh:order 7 ; + sh:description "Hash value of the FASTQ file using the MD5 algorithm"@en ; + sh:datatype xsd:string ; + sh:minCount 1 ; + sh:minCount 1 ; + sh:name "File checksum"@en . + +fastq:sequenceCount + sh:path fastqterms:sequence_count ; + sh:order 8 ; + sh:description "Number of reads in the library (sequencing depth)"@en ; + sh:datatype xsd:integer ; + sh:minCount 0 ; + sh:minCount 1 ; + sh:name "Sequence count"@en . + +fastq:basepairsCount + sh:path fastqterms:basepairs_count ; + sh:order 9 ; + sh:description "Number of base pairs (nucleotides) in the library"@en ; + sh:datatype xsd:integer ; + sh:minCount 0 ; + sh:minCount 1 ; + sh:name "Basepairs count"@en . + +fastq:averageSequenceLength + sh:path fastqterms:average_length ; + sh:order 10 ; + sh:description "Average length of the sequences"@en ; + sh:datatype xsd:decimal ; + sh:minCount 0 ; + sh:minCount 1 ; + sh:name "Average sequence length"@en . + +fastq:filteredSequenceCount + sh:path fastqterms:sequence_count_qual ; + sh:order 11 ; + sh:description "Number of reads in the library (sequencing depth) after quality filtering"@en ; + sh:datatype xsd:integer ; + sh:minCount 0 ; + sh:minCount 1 ; + sh:name "Quality-filtered sequence count"@en . + +fastq:filteredBasepairsCount + sh:path fastqterms:basepairs_count_qual ; + sh:order 12 ; + sh:description "Number of base pairs (nucleotides) in the library after quality filtering"@en ; + sh:datatype xsd:integer ; + sh:minCount 0 ; + sh:minCount 1 ; + sh:name "Quality-filtered basepairs count"@en . \ No newline at end of file diff --git a/terms/fastq/coscine.ttl b/terms/fastq/coscine.ttl new file mode 100644 index 0000000000000000000000000000000000000000..553762934c9cbcd7e15266990d48ba5fa5252ee3 --- /dev/null +++ b/terms/fastq/coscine.ttl @@ -0,0 +1,6 @@ +@base <http://purl.org/coscine/terms/fastq/> . + +@prefix coscinetype: <https://purl.org/coscine/terms/types#> . + +<http://purl.org/coscine/terms/fastq/> + a coscinetype:Vocabulary . \ No newline at end of file diff --git a/terms/fastq/index.ttl b/terms/fastq/index.ttl new file mode 100644 index 0000000000000000000000000000000000000000..75bfbce7e38a9af26ed89b6bfe9efdbb06647e39 --- /dev/null +++ b/terms/fastq/index.ttl @@ -0,0 +1,62 @@ +@base <http://purl.org/coscine/terms/fastq/> . + +@prefix fastq: <http://purl.org/coscine/terms/fastq/> . +@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . +@prefix dcterms: <http://purl.org/dc/terms/> . + +<http://purl.org/coscine/terms/fastq/> + dcterms:publisher <http://www.itc.rwth-aachen.de/> ; + dcterms:license <http://spdx.org/licenses/CC-BY-4.0> ; + dcterms:rights "Copyright © 2022 Institute of Medical Microbiology, University Hospital of RWTH, Aachen" ; + dcterms:title "Terms for the FASTQ Application Profile"@en . + +fastq:lib_source + rdfs:label "Library source"@en; + dcterms:description "Source of library (e.g., genomic, metagenomic)"@en +. + +fastq:lib_selection + rdfs:label "Library selection"@en; + dcterms:description "Selection used for the library construction (e.g., random, PCR). If no selection was used, use random"@en +. + +fastq:lib_strategy + rdfs:label "Library strategy"@en; + dcterms:description "Strategy used for the library construction (e.g., WGS, amplicon)"@en +. + +fastq:is_forward + rdfs:label "Forward-oriented sequences?"@en; + dcterms:description "Are the sequences in the FASTQ file in the forward orientation?"@en +. + +fastq:checksum + rdfs:label "File checksum"@en; + dcterms:description "Hash value of the FASTQ file using the MD5 algorithm"@en +. + +fastq:sequence_count + rdfs:label "Sequence count"@en; + dcterms:description "Number of reads in the library (sequencing depth)"@en +. + +fastq:basepairs_count + rdfs:label "Basepairs count"@en; + dcterms:description "Number of base pairs (nucleotides) in the library"@en +. + +fastq:average_length + rdfs:label "Average sequence length"@en; + dcterms:description "Average length of the sequences"@en +. + +fastq:sequence_count_qual + rdfs:label "Quality-filtered sequence count"@en; + dcterms:description "Number of reads in the library (sequencing depth) after quality filtering"@en +. + +fastq:basepairs_count_qual + rdfs:label "Quality-filtered basepairs count"@en; + dcterms:description "Number of base pairs (nucleotides) in the library after quality filtering"@en +. + \ No newline at end of file diff --git a/vocabularies/fastq/libraryLayout/coscine.ttl b/vocabularies/fastq/libraryLayout/coscine.ttl new file mode 100644 index 0000000000000000000000000000000000000000..fa8f15f6277f185be14a6161265ef00f216ce612 --- /dev/null +++ b/vocabularies/fastq/libraryLayout/coscine.ttl @@ -0,0 +1,7 @@ +@base <http://purl.org/coscine/vocabularies/fastq/libraryLayout> . + +@prefix coscinetype: <https://purl.org/coscine/terms/types#> . + +<http://purl.org/coscine/vocabularies/fastq/libraryLayout> + a coscinetype:Vocabulary . + \ No newline at end of file diff --git a/vocabularies/fastq/libraryLayout/index.ttl b/vocabularies/fastq/libraryLayout/index.ttl new file mode 100644 index 0000000000000000000000000000000000000000..0128367c0c8408a07c2d7ead9416bf901c6bd96b --- /dev/null +++ b/vocabularies/fastq/libraryLayout/index.ttl @@ -0,0 +1,35 @@ +@base <http://purl.org/coscine/vocabularies/fastq/libraryLayout> . + +@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . +@prefix dcterms: <http://purl.org/dc/terms/> . + +<http://purl.org/coscine/vocabularies/fastq/libraryLayout> + dcterms:license <http://spdx.org/licenses/MIT> ; + dcterms:publisher <https://itc.rwth-aachen.de/> ; + dcterms:rights "Copyright © 2022 Institute of Medical Microbiology, University Hospital of RWTH, Aachen" ; + dcterms:title "Library layout"@en ; + rdfs:label "Library layout"@en +. + + + +<http://purl.org/coscine/vocabularies/fastq/libraryLayout#0> a <http://purl.org/coscine/vocabularies/fastq/libraryLayout#0>; + rdfs:label "paired"@en , "paired"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryLayout> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryLayout#1> a <http://purl.org/coscine/vocabularies/fastq/libraryLayout#1>; + rdfs:label "single"@en , "single"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryLayout> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryLayout#2> a <http://purl.org/coscine/vocabularies/fastq/libraryLayout#2>; + rdfs:label "vector"@en , "vector"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryLayout> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryLayout#3> a <http://purl.org/coscine/vocabularies/fastq/libraryLayout#3>; + rdfs:label "other"@en , "other"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryLayout> +. + \ No newline at end of file diff --git a/vocabularies/fastq/librarySelection/coscine.ttl b/vocabularies/fastq/librarySelection/coscine.ttl new file mode 100644 index 0000000000000000000000000000000000000000..194f323219d020a4e813d6fd9e8fcaae2845d3ab --- /dev/null +++ b/vocabularies/fastq/librarySelection/coscine.ttl @@ -0,0 +1,7 @@ +@base <http://purl.org/coscine/vocabularies/fastq/librarySelection> . + +@prefix coscinetype: <https://purl.org/coscine/terms/types#> . + +<http://purl.org/coscine/vocabularies/fastq/librarySelection> + a coscinetype:Vocabulary . + \ No newline at end of file diff --git a/vocabularies/fastq/librarySelection/index.ttl b/vocabularies/fastq/librarySelection/index.ttl new file mode 100644 index 0000000000000000000000000000000000000000..e8cb102a36e4cf1c61882fa6d75ff9abd7e26096 --- /dev/null +++ b/vocabularies/fastq/librarySelection/index.ttl @@ -0,0 +1,170 @@ +@base <http://purl.org/coscine/vocabularies/fastq/librarySelection> . + +@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . +@prefix dcterms: <http://purl.org/dc/terms/> . + +<http://purl.org/coscine/vocabularies/fastq/librarySelection> + dcterms:license <http://spdx.org/licenses/MIT> ; + dcterms:publisher <https://itc.rwth-aachen.de/> ; + dcterms:rights "Copyright © 2022 Institute of Medical Microbiology, University Hospital of RWTH, Aachen" ; + dcterms:title "Library selection"@en ; + rdfs:label "Library selection"@en +. + + + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#0> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#0>; + rdfs:label "RANDOM"@en , "RANDOM"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#1> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#1>; + rdfs:label "PCR"@en , "PCR"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#2> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#2>; + rdfs:label "RANDOM PCR"@en , "RANDOM PCR"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#3> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#3>; + rdfs:label "RT-PCR"@en , "RT-PCR"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#4> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#4>; + rdfs:label "HMPR"@en , "HMPR"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#5> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#5>; + rdfs:label "MF"@en , "MF"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#6> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#6>; + rdfs:label "repeat fractionation"@en , "repeat fractionation"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#7> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#7>; + rdfs:label "size fractionation"@en , "size fractionation"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#8> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#8>; + rdfs:label "MSLL"@en , "MSLL"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#9> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#9>; + rdfs:label "cDNA"@en , "cDNA"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#10> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#10>; + rdfs:label "cDNA_randomPriming"@en , "cDNA_randomPriming"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#11> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#11>; + rdfs:label "cDNA_oligo_dT"@en , "cDNA_oligo_dT"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#12> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#12>; + rdfs:label "PolyA"@en , "PolyA"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#13> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#13>; + rdfs:label "Oligo-dT"@en , "Oligo-dT"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#14> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#14>; + rdfs:label "Inverse rRNA"@en , "Inverse rRNA"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#15> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#15>; + rdfs:label "Inverse rRNA selection"@en , "Inverse rRNA selection"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#16> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#16>; + rdfs:label "ChIP"@en , "ChIP"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#17> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#17>; + rdfs:label "ChIP-Seq"@en , "ChIP-Seq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#18> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#18>; + rdfs:label "MNase"@en , "MNase"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#19> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#19>; + rdfs:label "DNase"@en , "DNase"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#20> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#20>; + rdfs:label "Hybrid Selection"@en , "Hybrid Selection"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#21> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#21>; + rdfs:label "Reduced Representation"@en , "Reduced Representation"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#22> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#22>; + rdfs:label "Restriction Digest"@en , "Restriction Digest"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#23> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#23>; + rdfs:label "5-methylcytidine antibody"@en , "5-methylcytidine antibody"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#24> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#24>; + rdfs:label "MBD2 protein methyl-CpG binding domain"@en , "MBD2 protein methyl-CpG binding domain"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#25> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#25>; + rdfs:label "CAGE"@en , "CAGE"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#26> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#26>; + rdfs:label "RACE"@en , "RACE"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#27> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#27>; + rdfs:label "MDA"@en , "MDA"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#28> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#28>; + rdfs:label "padlock probes capture method"@en , "padlock probes capture method"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#29> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#29>; + rdfs:label "other"@en , "other"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySelection#30> a <http://purl.org/coscine/vocabularies/fastq/librarySelection#30>; + rdfs:label "unspecified"@en , "unspecified"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySelection> +. + \ No newline at end of file diff --git a/vocabularies/fastq/librarySource/coscine.ttl b/vocabularies/fastq/librarySource/coscine.ttl new file mode 100644 index 0000000000000000000000000000000000000000..8b3516916677872d0a5150bb5ba119a3a3d891d0 --- /dev/null +++ b/vocabularies/fastq/librarySource/coscine.ttl @@ -0,0 +1,7 @@ +@base <http://purl.org/coscine/vocabularies/fastq/librarySource> . + +@prefix coscinetype: <https://purl.org/coscine/terms/types#> . + +<http://purl.org/coscine/vocabularies/fastq/librarySource> + a coscinetype:Vocabulary . + \ No newline at end of file diff --git a/vocabularies/fastq/librarySource/index.ttl b/vocabularies/fastq/librarySource/index.ttl new file mode 100644 index 0000000000000000000000000000000000000000..f8b882c0f2488df311300e27437dda3df9060995 --- /dev/null +++ b/vocabularies/fastq/librarySource/index.ttl @@ -0,0 +1,60 @@ +@base <http://purl.org/coscine/vocabularies/fastq/librarySource> . + +@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . +@prefix dcterms: <http://purl.org/dc/terms/> . + +<http://purl.org/coscine/vocabularies/fastq/librarySource> + dcterms:license <http://spdx.org/licenses/MIT> ; + dcterms:publisher <https://itc.rwth-aachen.de/> ; + dcterms:rights "Copyright © 2022 Institute of Medical Microbiology, University Hospital of RWTH, Aachen" ; + dcterms:title "Library source"@en ; + rdfs:label "Library source"@en +. + + + +<http://purl.org/coscine/vocabularies/fastq/librarySource#0> a <http://purl.org/coscine/vocabularies/fastq/librarySource#0>; + rdfs:label "GENOMIC"@en , "GENOMIC"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySource> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySource#1> a <http://purl.org/coscine/vocabularies/fastq/librarySource#1>; + rdfs:label "GENOMIC SINGLE CELL"@en , "GENOMIC SINGLE CELL"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySource> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySource#2> a <http://purl.org/coscine/vocabularies/fastq/librarySource#2>; + rdfs:label "TRANSCRIPTOMIC"@en , "TRANSCRIPTOMIC"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySource> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySource#3> a <http://purl.org/coscine/vocabularies/fastq/librarySource#3>; + rdfs:label "TRANSCRIPTOMIC SINGLE CELL"@en , "TRANSCRIPTOMIC SINGLE CELL"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySource> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySource#4> a <http://purl.org/coscine/vocabularies/fastq/librarySource#4>; + rdfs:label "METAGENOMIC"@en , "METAGENOMIC"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySource> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySource#5> a <http://purl.org/coscine/vocabularies/fastq/librarySource#5>; + rdfs:label "METATRANSCRIPTOMIC"@en , "METATRANSCRIPTOMIC"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySource> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySource#6> a <http://purl.org/coscine/vocabularies/fastq/librarySource#6>; + rdfs:label "SYNTHETIC"@en , "SYNTHETIC"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySource> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySource#7> a <http://purl.org/coscine/vocabularies/fastq/librarySource#7>; + rdfs:label "VIRAL RNA"@en , "VIRAL RNA"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySource> +. + +<http://purl.org/coscine/vocabularies/fastq/librarySource#8> a <http://purl.org/coscine/vocabularies/fastq/librarySource#8>; + rdfs:label "OTHER"@en , "OTHER"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/librarySource> +. + \ No newline at end of file diff --git a/vocabularies/fastq/libraryStrategy/coscine.ttl b/vocabularies/fastq/libraryStrategy/coscine.ttl new file mode 100644 index 0000000000000000000000000000000000000000..04737bf30e3ee33e5757f4a7c5b893407d205cd1 --- /dev/null +++ b/vocabularies/fastq/libraryStrategy/coscine.ttl @@ -0,0 +1,7 @@ +@base <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> . + +@prefix coscinetype: <https://purl.org/coscine/terms/types#> . + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy> + a coscinetype:Vocabulary . + \ No newline at end of file diff --git a/vocabularies/fastq/libraryStrategy/index.ttl b/vocabularies/fastq/libraryStrategy/index.ttl new file mode 100644 index 0000000000000000000000000000000000000000..e27ba7da3ad38fd35e800466683587fb5b805553 --- /dev/null +++ b/vocabularies/fastq/libraryStrategy/index.ttl @@ -0,0 +1,195 @@ +@base <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> . + +@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . +@prefix dcterms: <http://purl.org/dc/terms/> . + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy> + dcterms:license <http://spdx.org/licenses/MIT> ; + dcterms:publisher <https://itc.rwth-aachen.de/> ; + dcterms:rights "Copyright © 2022 Institute of Medical Microbiology, University Hospital of RWTH, Aachen" ; + dcterms:title "Library strategy"@en ; + rdfs:label "Library strategy"@en +. + + + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#0> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#0>; + rdfs:label "WGS"@en , "WGS"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#1> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#1>; + rdfs:label "WGA"@en , "WGA"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#2> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#2>; + rdfs:label "WXS"@en , "WXS"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#3> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#3>; + rdfs:label "RNA-Seq"@en , "RNA-Seq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#4> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#4>; + rdfs:label "ssRNA-seq"@en , "ssRNA-seq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#5> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#5>; + rdfs:label "miRNA-Seq"@en , "miRNA-Seq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#6> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#6>; + rdfs:label "ncRNA-Seq"@en , "ncRNA-Seq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#7> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#7>; + rdfs:label "FL-cDNA"@en , "FL-cDNA"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#8> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#8>; + rdfs:label "EST"@en , "EST"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#9> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#9>; + rdfs:label "Hi-C"@en , "Hi-C"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#10> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#10>; + rdfs:label "ATAC-seq"@en , "ATAC-seq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#11> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#11>; + rdfs:label "WCS"@en , "WCS"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#12> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#12>; + rdfs:label "RAD-Seq"@en , "RAD-Seq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#13> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#13>; + rdfs:label "CLONE"@en , "CLONE"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#14> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#14>; + rdfs:label "POOLCLONE"@en , "POOLCLONE"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#15> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#15>; + rdfs:label "AMPLICON"@en , "AMPLICON"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#16> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#16>; + rdfs:label "CLONEEND"@en , "CLONEEND"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#17> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#17>; + rdfs:label "FINISHING"@en , "FINISHING"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#18> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#18>; + rdfs:label "ChIP-Seq"@en , "ChIP-Seq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#19> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#19>; + rdfs:label "MNase-Seq"@en , "MNase-Seq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#20> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#20>; + rdfs:label "DNase-Hypersensitivity"@en , "DNase-Hypersensitivity"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#21> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#21>; + rdfs:label "Bisulfite-Seq"@en , "Bisulfite-Seq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#22> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#22>; + rdfs:label "CTS"@en , "CTS"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#23> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#23>; + rdfs:label "MRE-Seq"@en , "MRE-Seq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#24> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#24>; + rdfs:label "MeDIP-Seq"@en , "MeDIP-Seq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#25> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#25>; + rdfs:label "MBD-Seq"@en , "MBD-Seq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#26> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#26>; + rdfs:label "Tn-Seq"@en , "Tn-Seq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#27> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#27>; + rdfs:label "VALIDATION"@en , "VALIDATION"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#28> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#28>; + rdfs:label "FAIRE-seq"@en , "FAIRE-seq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#29> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#29>; + rdfs:label "SELEX"@en , "SELEX"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#30> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#30>; + rdfs:label "RIP-Seq"@en , "RIP-Seq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#31> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#31>; + rdfs:label "ChIA-PET"@en , "ChIA-PET"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#32> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#32>; + rdfs:label "Synthetic-Long-Read"@en , "Synthetic-Long-Read"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#33> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#33>; + rdfs:label "Targeted-Capture"@en , "Targeted-Capture"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#34> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#34>; + rdfs:label "Tethered Chromatin Conformation Capture"@en , "Tethered Chromatin Conformation Capture"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + +<http://purl.org/coscine/vocabularies/fastq/libraryStrategy#35> a <http://purl.org/coscine/vocabularies/fastq/libraryStrategy#35>; + rdfs:label "OTHER"@en , "OTHER"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/libraryStrategy> +. + \ No newline at end of file diff --git a/vocabularies/fastq/sequencingMethod/coscine.ttl b/vocabularies/fastq/sequencingMethod/coscine.ttl new file mode 100644 index 0000000000000000000000000000000000000000..c2a4b569e1c3e988a7b5982a418098893049db48 --- /dev/null +++ b/vocabularies/fastq/sequencingMethod/coscine.ttl @@ -0,0 +1,7 @@ +@base <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> . + +@prefix coscinetype: <https://purl.org/coscine/terms/types#> . + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod> + a coscinetype:Vocabulary . + \ No newline at end of file diff --git a/vocabularies/fastq/sequencingMethod/index.ttl b/vocabularies/fastq/sequencingMethod/index.ttl new file mode 100644 index 0000000000000000000000000000000000000000..506a3a3cac0da5348a3e623e70819ef55877489a --- /dev/null +++ b/vocabularies/fastq/sequencingMethod/index.ttl @@ -0,0 +1,135 @@ +@base <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> . + +@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . +@prefix dcterms: <http://purl.org/dc/terms/> . + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod> + dcterms:license <http://spdx.org/licenses/MIT> ; + dcterms:publisher <https://itc.rwth-aachen.de/> ; + dcterms:rights "Copyright © 2022 Institute of Medical Microbiology, University Hospital of RWTH, Aachen" ; + dcterms:title "Sequencing Method"@en ; + rdfs:label "Sequencing Method"@en +. + + + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#0> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#0>; + rdfs:label "454 Genome Sequence 20"@en , "454 Genome Sequence 20"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#1> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#1>; + rdfs:label "454 Genome Sequencer FLX"@en , "454 Genome Sequencer FLX"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#2> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#2>; + rdfs:label "AB SOLiD System"@en , "AB SOLiD System"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#3> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#3>; + rdfs:label "ABI 377 automated sequencer"@en , "ABI 377 automated sequencer"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#4> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#4>; + rdfs:label "HeliScope Single Molecule Sequencer"@en , "HeliScope Single Molecule Sequencer"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#5> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#5>; + rdfs:label "Illumina Genome Analyzer"@en , "Illumina Genome Analyzer"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#6> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#6>; + rdfs:label "Illumina Genome Analyzer II"@en , "Illumina Genome Analyzer II"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#7> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#7>; + rdfs:label "Illumina HiSeq 1000"@en , "Illumina HiSeq 1000"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#8> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#8>; + rdfs:label "Illumina HiSeq 2000"@en , "Illumina HiSeq 2000"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#9> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#9>; + rdfs:label "Illumina HiSeq 2500"@en , "Illumina HiSeq 2500"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#10> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#10>; + rdfs:label "Illumina HiSeq 3000"@en , "Illumina HiSeq 3000"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#11> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#11>; + rdfs:label "Illumina HiSeq 4000"@en , "Illumina HiSeq 4000"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#12> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#12>; + rdfs:label "Illumina HiSeq X Ten"@en , "Illumina HiSeq X Ten"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#13> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#13>; + rdfs:label "Illumina MiniSeq"@en , "Illumina MiniSeq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#14> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#14>; + rdfs:label "Illumina NovaSeq 6000"@en , "Illumina NovaSeq 6000"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#15> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#15>; + rdfs:label "Li-Cor 4300 DNA Analysis System"@en , "Li-Cor 4300 DNA Analysis System"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#16> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#16>; + rdfs:label "MiSeq"@en , "MiSeq"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#17> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#17>; + rdfs:label "NextSeq 500"@en , "NextSeq 500"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#18> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#18>; + rdfs:label "Oxford Nanopore GridION Mk1"@en , "Oxford Nanopore GridION Mk1"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#19> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#19>; + rdfs:label "Oxford Nanopore MinION"@en , "Oxford Nanopore MinION"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#20> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#20>; + rdfs:label "Oxford Nanopore PromethION"@en , "Oxford Nanopore PromethION"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#21> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#21>; + rdfs:label "PacBio RS II"@en , "PacBio RS II"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#22> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#22>; + rdfs:label "PacBio Sequel"@en , "PacBio Sequel"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + +<http://purl.org/coscine/vocabularies/fastq/sequencingMethod#23> a <http://purl.org/coscine/vocabularies/fastq/sequencingMethod#23>; + rdfs:label "PacBio Sequel II"@en , "PacBio Sequel II"@de ; + rdfs:subClassOf <http://purl.org/coscine/vocabularies/fastq/sequencingMethod> +. + \ No newline at end of file