Suggestions to improve the flow and incremental complexity
To follow-up on our train discussion post https://git.rwth-aachen.de/clavellab/workshop-biometadata-04 @mmagel
Incremental example
The idea would be to use the Otter example data as a thread throughout the course. We could add incremental changes to the paragraph in order of increasing complexity:
- date in ISO format
- species name and taxonomy ID
- Ontology terms
- Annotations in Europe PMC (optional)
Reorganization
Perhaps it would be best to have the ontology definition (https://git.rwth-aachen.de/clavellab/workshop-biometadata-05/-/blob/b94ae902c40694cfa31fd20489308d47a53b1b0c/lectures/ontologies-for-biological-data.qmd#L64) AFTER the exercise on Show us the features of an ontology (https://git.rwth-aachen.de/clavellab/workshop-biometadata-05/-/blob/b94ae902c40694cfa31fd20489308d47a53b1b0c/lectures/ontologies-for-biological-data.qmd#L243)
In that regards, the term "feces" UBERON from the example could be used as a thread as well, to keep things specific and consistent.