Yeast Cell Segmentation in Microstructured Environments with Deep Learning

Tim Prangemeier, Christian Wildner, André O. Françani, Christoph Reich & Heinz Koeppl

This repository includes the official implementation of the paper Yeast Cell Segmentation in Microstructured Environments with Deep Learning

If you find this research useful in your work, please cite our paper:

@article{Prangemeier2021,
    title={{Yeast Cell Segmentation in Microstructured Environments with Deep Learning}},
    author={Prangemeier, Tim and Wildner, Christian and Françani, André O. and Reich, Christoph and Koeppl, Heinz},
    journal = {Biosystems},
    volume = {1},
    pages = {1-2},
    year = {2021},
}

U-Net

For the U-Net implementation, please refer to the U-Net folder (sperate README).

Mask R-CNN

For the Mask R-CNN implementation, please refer to the Mask R-CNN folder (sperate README).