[0KRunning with gitlab-runner 17.5.3 (12030cf4)[0;m
[0K on Synology Docker t3_wks13p, system ID: r_hmHZ1S6oSJ8k[0;m
[0K[36;1mResolving secrets[0;m[0;m
section_start:1739377206:prepare_executor
[0K[0K[36;1mPreparing the "docker" executor[0;m[0;m
[0KUsing Docker executor with image docker:20.10.16 ...[0;m
[0KStarting service docker:20.10.16-dind...[0;m
[0KPulling docker image docker:20.10.16-dind ...[0;m
[0KUsing docker image sha256:7bed3906fb84670066eed54992837895a699b4795576dc651871645cf191ef07 for docker:20.10.16-dind with digest docker@sha256:56ef400f08be1ca817d7e2cfdb43803786ab28d84c8167e8590622d9bab5b415 ...[0;m
[0KWaiting for services to be up and running (timeout 30 seconds)...[0;m
[0;33m*** WARNING:[0;m Service runner-t3wks13p-project-109103-concurrent-0-edb86a48a6b3e0c9-docker-0 probably didn't start properly.
Health check error:
service "runner-t3wks13p-project-109103-concurrent-0-edb86a48a6b3e0c9-docker-0-wait-for-service" timeout
Health check container logs:
2025-02-12T16:20:44.377448355Z waiting for TCP connection to 172.17.0.3 on [2375 2376]...
2025-02-12T16:20:44.379902986Z dialing 172.17.0.3:2376...
2025-02-12T16:20:44.379998025Z dialing 172.17.0.3:2375...
2025-02-12T16:20:45.383035309Z dialing 172.17.0.3:2375...
2025-02-12T16:20:45.383620281Z dialing 172.17.0.3:2376...
2025-02-12T16:20:46.383989597Z dialing 172.17.0.3:2376...
2025-02-12T16:20:46.384083709Z dialing 172.17.0.3:2375...
2025-02-12T16:20:47.384476840Z dialing 172.17.0.3:2376...
2025-02-12T16:20:47.384584175Z dialing 172.17.0.3:2375...
2025-02-12T16:20:48.385021789Z dialing 172.17.0.3:2376...
2025-02-12T16:20:48.385546056Z dialing 172.17.0.3:2375...
2025-02-12T16:20:49.387060353Z dialing 172.17.0.3:2376...
2025-02-12T16:20:49.387176207Z dialing 172.17.0.3:2375...
2025-02-12T16:20:50.387524634Z dialing 172.17.0.3:2376...
2025-02-12T16:20:50.387607709Z dialing 172.17.0.3:2375...
2025-02-12T16:20:51.388419699Z dialing 172.17.0.3:2375...
2025-02-12T16:20:51.388502070Z dialing 172.17.0.3:2376...
2025-02-12T16:20:52.389463136Z dialing 172.17.0.3:2375...
2025-02-12T16:20:52.389549582Z dialing 172.17.0.3:2376...
2025-02-12T16:20:53.390110568Z dialing 172.17.0.3:2375...
2025-02-12T16:20:53.390357090Z dialing 172.17.0.3:2376...
2025-02-12T16:20:54.391111153Z dialing 172.17.0.3:2375...
2025-02-12T16:20:54.391235748Z dialing 172.17.0.3:2376...
2025-02-12T16:20:55.392057256Z dialing 172.17.0.3:2375...
2025-02-12T16:20:55.392304297Z dialing 172.17.0.3:2376...
2025-02-12T16:20:56.392797318Z dialing 172.17.0.3:2376...
2025-02-12T16:20:56.393231399Z dialing 172.17.0.3:2375...
2025-02-12T16:20:57.393364786Z dialing 172.17.0.3:2375...
2025-02-12T16:20:57.393634642Z dialing 172.17.0.3:2376...
2025-02-12T16:20:58.394075848Z dialing 172.17.0.3:2375...
2025-02-12T16:20:58.394522522Z dialing 172.17.0.3:2376...
2025-02-12T16:20:59.395845667Z dialing 172.17.0.3:2375...
2025-02-12T16:20:59.395949484Z dialing 172.17.0.3:2376...
2025-02-12T16:21:00.396210428Z dialing 172.17.0.3:2375...
2025-02-12T16:21:00.396312689Z dialing 172.17.0.3:2376...
2025-02-12T16:21:01.397933506Z dialing 172.17.0.3:2376...
2025-02-12T16:21:01.398046878Z dialing 172.17.0.3:2375...
2025-02-12T16:21:02.398103004Z dialing 172.17.0.3:2375...
2025-02-12T16:21:02.398219524Z dialing 172.17.0.3:2376...
Service container logs:
2025-02-12T16:20:37.973776193Z Generating RSA private key, 4096 bit long modulus (2 primes)
2025-02-12T16:20:39.071282562Z .............................................++++
2025-02-12T16:20:40.284292717Z ..................................................++++
2025-02-12T16:20:40.286115931Z e is 65537 (0x010001)
2025-02-12T16:20:40.358468296Z Generating RSA private key, 4096 bit long modulus (2 primes)
2025-02-12T16:20:50.690430899Z .................................................................................................................................................................................................................................................................................................................................................................................................................................................................++++
2025-02-12T16:20:56.436441637Z .........................................................................................................................................................................................................................................................++++
2025-02-12T16:20:56.438291148Z e is 65537 (0x010001)
2025-02-12T16:20:56.616884413Z Signature ok
2025-02-12T16:20:56.616971340Z subject=CN = docker:dind server
2025-02-12T16:20:56.617602683Z Getting CA Private Key
2025-02-12T16:20:56.685581423Z /certs/server/cert.pem: OK
2025-02-12T16:20:56.695113204Z Generating RSA private key, 4096 bit long modulus (2 primes)
2025-02-12T16:20:59.751795770Z ...................................................................................................................................++++
2025-02-12T16:20:59.997899323Z ........++++
2025-02-12T16:20:59.999682240Z e is 65537 (0x010001)
2025-02-12T16:21:00.107189567Z Signature ok
2025-02-12T16:21:00.107281791Z subject=CN = docker:dind client
2025-02-12T16:21:00.107839837Z Getting CA Private Key
2025-02-12T16:21:00.175995432Z /certs/client/cert.pem: OK
2025-02-12T16:21:00.789208412Z ip: can't find device 'ip_tables'
2025-02-12T16:21:00.791230962Z ip_tables 28672 3 iptable_mangle,iptable_nat,iptable_filter
2025-02-12T16:21:00.791848083Z x_tables 28672 19 xt_ipvs,xt_mark,iptable_mangle,xt_conntrack,xt_addrtype,ip6table_filter,ip6_tables,xt_MASQUERADE,xt_REDIRECT,xt_nat,xt_recent,xt_iprange,xt_limit,xt_state,xt_tcpudp,xt_multiport,xt_LOG,iptable_filter,ip_tables
2025-02-12T16:21:00.793231697Z modprobe: can't change directory to '/lib/modules': No such file or directory
2025-02-12T16:21:00.800940449Z mount: mounting none on /sys/kernel/security failed: Permission denied
2025-02-12T16:21:00.801056488Z Could not mount /sys/kernel/security.
2025-02-12T16:21:00.801104303Z AppArmor detection and --privileged mode might break.
2025-02-12T16:21:00.805441335Z mount: mounting none on /tmp failed: Permission denied
[0;33m*********[0;m
[0KPulling docker image docker:20.10.16 ...[0;m
[0KUsing docker image sha256:9da3ec5b5d761f2ab25fbd7dd0c2c6de980878fdc67fd084c34a0150da9a63f7 for docker:20.10.16 with digest docker@sha256:5bc07a93c9b28e57a58d57fbcf437d1551ff80ae33b4274fb60a1ade2d6c9da4 ...[0;m
section_end:1739377282:prepare_executor
[0Ksection_start:1739377282:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on runner-t3wks13p-project-109103-concurrent-0 via 1f9c60dcd660...
section_end:1739377291:prepare_script
[0Ksection_start:1739377291:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mFetching changes with git depth set to 20...[0;m
Reinitialized existing Git repository in /builds/JanHab/fxdgm-testing/.git/
[32;1mChecking out eb4e5099 as detached HEAD (ref is main)...[0;m
Removing public/
[32;1mSkipping Git submodules setup[0;m
section_end:1739377300:get_sources
[0Ksection_start:1739377300:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0KUsing docker image sha256:9da3ec5b5d761f2ab25fbd7dd0c2c6de980878fdc67fd084c34a0150da9a63f7 for docker:20.10.16 with digest docker@sha256:5bc07a93c9b28e57a58d57fbcf437d1551ff80ae33b4274fb60a1ade2d6c9da4 ...[0;m
[32;1m$ echo "$CI_REGISTRY_PASSWORD" | docker login $CI_REGISTRY -u $CI_REGISTRY_USER --password-stdin[0;m
WARNING! Your password will be stored unencrypted in /root/.docker/config.json.
Configure a credential helper to remove this warning. See
https://docs.docker.com/engine/reference/commandline/login/#credentials-store
Login Succeeded
[32;1m$ docker pull $CI_REGISTRY_IMAGE:latest || true[0;m
latest: Pulling from janhab/fxdgm-testing
Digest: sha256:3ec92321d817bb15ed1b41d41168455a8ed72b0a69960e2c09cb847844c3ad36
Status: Image is up to date for registry.git.rwth-aachen.de/janhab/fxdgm-testing:latest
registry.git.rwth-aachen.de/janhab/fxdgm-testing:latest
[32;1m$ docker build --cache-from $CI_REGISTRY_IMAGE:latest --tag $CI_REGISTRY_IMAGE:latest .[0;m
Sending build context to Docker daemon 302.3MB
Step 1/9 : FROM continuumio/miniconda3:latest
---> f912e1ee4124
Step 2/9 : ENV CONDA_DEFAULT_ENV=base
---> Using cache
---> 754dc819b4b6
Step 3/9 : ENV PATH /opt/conda/envs/${CONDA_DEFAULT_ENV}/bin:$PATH
---> Using cache
---> e37555b69ad9
Step 4/9 : ENV HOME /root
---> Using cache
---> a8cd518df950
Step 5/9 : RUN conda install -n ${CONDA_DEFAULT_ENV} -c conda-forge fenics-dolfinx=0.8.0 mpich=4.2.1 pyvista=0.43.10 gcc=12.4.0 sphinx=7.3.7 myst-parser=4.0.0 sphinx-copybutton=0.5.2 sphinx-rtd-theme=3.0.1 pytest=8.3.3 pytest-cov=6.0.0 sqlite=3.41.2 -y
---> Using cache
---> e3f76242dff7
Step 6/9 : WORKDIR /root
---> Using cache
---> ac4308d2cdfb
Step 7/9 : ADD . /fxdgm
---> 458773b1de37
Step 8/9 : RUN pip install --editable /fxdgm/.
---> Running in 95116d25d9a4
Obtaining file:///fxdgm
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Checking if build backend supports build_editable: started
Checking if build backend supports build_editable: finished with status 'done'
Getting requirements to build editable: started
Getting requirements to build editable: finished with status 'done'
Installing backend dependencies: started
Installing backend dependencies: finished with status 'done'
Preparing editable metadata (pyproject.toml): started
Preparing editable metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: pyvista==0.43.10 in /opt/conda/lib/python3.12/site-packages (from fxdgm==1.0) (0.43.10)
Requirement already satisfied: numpy==1.26.4 in /opt/conda/lib/python3.12/site-packages (from fxdgm==1.0) (1.26.4)
Collecting scipy==1.14.0 (from fxdgm==1.0)
Downloading scipy-1.14.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (113 kB)
Requirement already satisfied: matplotlib>=3.0.1 in /opt/conda/lib/python3.12/site-packages (from pyvista==0.43.10->fxdgm==1.0) (3.10.0)
Requirement already satisfied: pillow in /opt/conda/lib/python3.12/site-packages (from pyvista==0.43.10->fxdgm==1.0) (10.3.0)
Requirement already satisfied: pooch in /opt/conda/lib/python3.12/site-packages (from pyvista==0.43.10->fxdgm==1.0) (1.8.2)
Requirement already satisfied: scooby>=0.5.1 in /opt/conda/lib/python3.12/site-packages (from pyvista==0.43.10->fxdgm==1.0) (0.10.0)
Requirement already satisfied: vtk in /opt/conda/lib/python3.12/site-packages (from pyvista==0.43.10->fxdgm==1.0) (9.3.0)
Requirement already satisfied: contourpy>=1.0.1 in /opt/conda/lib/python3.12/site-packages (from matplotlib>=3.0.1->pyvista==0.43.10->fxdgm==1.0) (1.3.1)
Requirement already satisfied: cycler>=0.10 in /opt/conda/lib/python3.12/site-packages (from matplotlib>=3.0.1->pyvista==0.43.10->fxdgm==1.0) (0.12.1)
Requirement already satisfied: fonttools>=4.22.0 in /opt/conda/lib/python3.12/site-packages (from matplotlib>=3.0.1->pyvista==0.43.10->fxdgm==1.0) (4.56.0)
Requirement already satisfied: kiwisolver>=1.3.1 in /opt/conda/lib/python3.12/site-packages (from matplotlib>=3.0.1->pyvista==0.43.10->fxdgm==1.0) (1.4.8)
Requirement already satisfied: packaging>=20.0 in /opt/conda/lib/python3.12/site-packages (from matplotlib>=3.0.1->pyvista==0.43.10->fxdgm==1.0) (24.1)
Requirement already satisfied: pyparsing>=2.3.1 in /opt/conda/lib/python3.12/site-packages (from matplotlib>=3.0.1->pyvista==0.43.10->fxdgm==1.0) (3.2.1)
Requirement already satisfied: python-dateutil>=2.7 in /opt/conda/lib/python3.12/site-packages (from matplotlib>=3.0.1->pyvista==0.43.10->fxdgm==1.0) (2.9.0.post0)
Requirement already satisfied: platformdirs>=2.5.0 in /opt/conda/lib/python3.12/site-packages (from pooch->pyvista==0.43.10->fxdgm==1.0) (3.10.0)
Requirement already satisfied: requests>=2.19.0 in /opt/conda/lib/python3.12/site-packages (from pooch->pyvista==0.43.10->fxdgm==1.0) (2.32.3)
Requirement already satisfied: six>=1.5 in /opt/conda/lib/python3.12/site-packages (from python-dateutil>=2.7->matplotlib>=3.0.1->pyvista==0.43.10->fxdgm==1.0) (1.17.0)
Requirement already satisfied: charset-normalizer<4,>=2 in /opt/conda/lib/python3.12/site-packages (from requests>=2.19.0->pooch->pyvista==0.43.10->fxdgm==1.0) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in /opt/conda/lib/python3.12/site-packages (from requests>=2.19.0->pooch->pyvista==0.43.10->fxdgm==1.0) (3.7)
Requirement already satisfied: urllib3<3,>=1.21.1 in /opt/conda/lib/python3.12/site-packages (from requests>=2.19.0->pooch->pyvista==0.43.10->fxdgm==1.0) (2.2.3)
Requirement already satisfied: certifi>=2017.4.17 in /opt/conda/lib/python3.12/site-packages (from requests>=2.19.0->pooch->pyvista==0.43.10->fxdgm==1.0) (2024.12.14)
Downloading scipy-1.14.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (35.3 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 35.3/35.3 MB 9.8 MB/s eta 0:00:00
Building wheels for collected packages: fxdgm
Building editable for fxdgm (pyproject.toml): started
Building editable for fxdgm (pyproject.toml): finished with status 'done'
Created wheel for fxdgm: filename=fxdgm-1.0-0.editable-py3-none-any.whl size=17592 sha256=5ffa6ae88067d86707c264ec4819fa52e6adf2c4e203842161deb39aae6a2549
Stored in directory: /tmp/pip-ephem-wheel-cache-fluvwq5e/wheels/1d/df/70/1000b4574337ce998416243a7b55d9b78984631178ecca3e34
Successfully built fxdgm
Installing collected packages: scipy, fxdgm
Successfully installed fxdgm-1.0 scipy-1.14.0
[91mWARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning.
[0mRemoving intermediate container 95116d25d9a4
---> 244904f936cc
Step 9/9 : CMD ["bash"]
---> Running in 540326152a49
Removing intermediate container 540326152a49
---> a45a894fcd7b
Successfully built a45a894fcd7b
Successfully tagged registry.git.rwth-aachen.de/janhab/fxdgm-testing:latest
[32;1m$ docker push $CI_REGISTRY_IMAGE:latest[0;m
The push refers to repository [registry.git.rwth-aachen.de/janhab/fxdgm-testing]
6a95f65e20cc: Preparing
37e7a8b580d0: Preparing
20f9b2886f35: Preparing
6cac6c54627c: Preparing
4d6b52d7407b: Preparing
f0f039847c08: Preparing
f0f039847c08: Waiting
20f9b2886f35: Layer already exists
6cac6c54627c: Layer already exists
4d6b52d7407b: Layer already exists
f0f039847c08: Layer already exists
6a95f65e20cc: Pushed
37e7a8b580d0: Pushed
latest: digest: sha256:cee42efb0ee18b4fc2d59d2aa2fdfadb02f9f1e5807d01f51f73e9d949050756 size: 1593
section_end:1739377723:step_script
[0Ksection_start:1739377724:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1739377731:cleanup_file_variables
[0K[32;1mJob succeeded[0;m