diff --git a/.coverage b/.coverage deleted file mode 100644 index f50d7eead9a1e192f1d3388d0616e50d9d8c294c..0000000000000000000000000000000000000000 Binary files a/.coverage and /dev/null differ diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 4df2e3105e89fe9ffd59d0942ae29eecd82d3e8e..cf48a9893491dfad76186cc52280e827e6dcf4e3 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -49,7 +49,6 @@ test: tags: - docker script: - # - python -m pytest # Run the tests - pytest --cov=fxdgm --cov-report=term --cov-report=html tests/ # Run the tests and store coverage artifacts: paths: diff --git a/Dockerfile b/Dockerfile index dd58c7c636ccec4515d1354e864b39a53d61b215..ae690b60b79e6b0d79cec16295f8480bf5075510 100644 --- a/Dockerfile +++ b/Dockerfile @@ -7,13 +7,10 @@ ENV PATH /opt/conda/envs/${CONDA_DEFAULT_ENV}/bin:$PATH ENV HOME /root # Create the environment and install packages -# RUN conda install -n ${CONDA_DEFAULT_ENV} python=3.11.8 -y # FEniCSx backend + documentation and testing dependencies +# sqlite for coverage, it necessary RUN conda install -n ${CONDA_DEFAULT_ENV} -c conda-forge fenics-dolfinx=0.8.0 mpich=4.2.1 pyvista=0.43.10 gcc=12.4.0 sphinx=7.3.7 myst-parser=4.0.0 sphinx-copybutton=0.5.2 sphinx-rtd-theme=3.0.1 pytest=8.3.3 pytest-cov=6.0.0 sqlite=3.41.2 -y -# Activate environment -# SHELL ["conda", "run", "-n", "fenicsx-env", "/bin/bash", "-c"] - WORKDIR /root ADD . /fxdgm diff --git a/coverage.xml b/coverage.xml deleted file mode 100644 index 3d7d1a1faa92f3dcb8b55704cb34f8f8505d4d02..0000000000000000000000000000000000000000 --- a/coverage.xml +++ /dev/null @@ -1,640 +0,0 @@ -<?xml version="1.0" ?> -<coverage version="7.6.11" timestamp="1739272050600" lines-valid="591" lines-covered="560" line-rate="0.9475" branches-covered="0" branches-valid="0" branch-rate="0" complexity="0"> - <!-- Generated by coverage.py: https://coverage.readthedocs.io/en/7.6.11 --> - <!-- Based on https://raw.githubusercontent.com/cobertura/web/master/htdocs/xml/coverage-04.dtd --> - <sources> - <source>/Users/janhabscheid/Documents/git/fxdgm-testing/fxdgm</source> - </sources> - <packages> - <package name="." line-rate="0.9475" branch-rate="0" complexity="0"> - <classes> - <class name="ElectrolyticDiode.py" filename="ElectrolyticDiode.py" complexity="0" line-rate="0.9384" branch-rate="0"> - <methods/> - <lines> - <line number="10" hits="1"/> - <line number="11" hits="1"/> - <line number="12" hits="1"/> - <line number="13" hits="1"/> - <line number="14" hits="1"/> - <line number="15" hits="1"/> - <line number="16" hits="1"/> - <line number="17" hits="1"/> - <line number="18" hits="1"/> - <line number="19" hits="1"/> - <line number="21" hits="1"/> - <line number="82" hits="1"/> - <line number="83" hits="0"/> - <line number="84" hits="1"/> - <line number="85" hits="1"/> - <line number="86" hits="1"/> - <line number="87" hits="1"/> - <line number="88" hits="0"/> - <line number="89" hits="0"/> - <line number="90" hits="0"/> - <line number="93" hits="1"/> - <line number="94" hits="1"/> - <line number="95" hits="0"/> - <line number="97" hits="1"/> - <line number="98" hits="0"/> - <line number="100" hits="1"/> - <line number="101" hits="1"/> - <line number="103" hits="1"/> - <line number="104" hits="1"/> - <line number="106" hits="1"/> - <line number="107" hits="1"/> - <line number="108" hits="1"/> - <line number="109" hits="1"/> - <line number="111" hits="1"/> - <line number="112" hits="1"/> - <line number="113" hits="1"/> - <line number="114" hits="1"/> - <line number="116" hits="1"/> - <line number="117" hits="1"/> - <line number="118" hits="1"/> - <line number="119" hits="1"/> - <line number="121" hits="1"/> - <line number="122" hits="1"/> - <line number="123" hits="1"/> - <line number="124" hits="1"/> - <line number="127" hits="1"/> - <line number="130" hits="1"/> - <line number="135" hits="1"/> - <line number="136" hits="1"/> - <line number="139" hits="1"/> - <line number="140" hits="1"/> - <line number="141" hits="1"/> - <line number="144" hits="1"/> - <line number="145" hits="1"/> - <line number="146" hits="1"/> - <line number="147" hits="1"/> - <line number="149" hits="1"/> - <line number="150" hits="1"/> - <line number="151" hits="1"/> - <line number="152" hits="1"/> - <line number="153" hits="1"/> - <line number="154" hits="1"/> - <line number="155" hits="1"/> - <line number="156" hits="1"/> - <line number="157" hits="1"/> - <line number="158" hits="1"/> - <line number="159" hits="1"/> - <line number="160" hits="1"/> - <line number="162" hits="1"/> - <line number="163" hits="1"/> - <line number="164" hits="1"/> - <line number="165" hits="1"/> - <line number="166" hits="1"/> - <line number="167" hits="1"/> - <line number="168" hits="1"/> - <line number="169" hits="1"/> - <line number="170" hits="1"/> - <line number="171" hits="1"/> - <line number="172" hits="1"/> - <line number="173" hits="1"/> - <line number="176" hits="1"/> - <line number="177" hits="1"/> - <line number="178" hits="1"/> - <line number="179" hits="1"/> - <line number="181" hits="1"/> - <line number="182" hits="1"/> - <line number="183" hits="1"/> - <line number="184" hits="1"/> - <line number="186" hits="1"/> - <line number="187" hits="1"/> - <line number="188" hits="1"/> - <line number="189" hits="1"/> - <line number="192" hits="1"/> - <line number="212" hits="1"/> - <line number="246" hits="1"/> - <line number="247" hits="1"/> - <line number="250" hits="1"/> - <line number="251" hits="1"/> - <line number="253" hits="1"/> - <line number="254" hits="1"/> - <line number="262" hits="1"/> - <line number="274" hits="1"/> - <line number="275" hits="1"/> - <line number="276" hits="1"/> - <line number="277" hits="1"/> - <line number="278" hits="1"/> - <line number="279" hits="1"/> - <line number="280" hits="1"/> - <line number="281" hits="1"/> - <line number="282" hits="1"/> - <line number="283" hits="1"/> - <line number="284" hits="1"/> - <line number="285" hits="1"/> - <line number="286" hits="1"/> - <line number="287" hits="1"/> - <line number="295" hits="1"/> - <line number="298" hits="1"/> - <line number="299" hits="1"/> - <line number="300" hits="1"/> - <line number="301" hits="1"/> - <line number="303" hits="1"/> - <line number="304" hits="1"/> - <line number="305" hits="1"/> - <line number="306" hits="1"/> - <line number="309" hits="1"/> - <line number="311" hits="1"/> - <line number="312" hits="1"/> - <line number="313" hits="1"/> - <line number="314" hits="1"/> - <line number="315" hits="1"/> - <line number="316" hits="1"/> - <line number="319" hits="1"/> - <line number="320" hits="1"/> - <line number="321" hits="1"/> - <line number="322" hits="1"/> - <line number="325" hits="1"/> - <line number="326" hits="1"/> - <line number="327" hits="1"/> - <line number="328" hits="1"/> - <line number="330" hits="1"/> - <line number="331" hits="1"/> - <line number="333" hits="1"/> - <line number="334" hits="1"/> - <line number="335" hits="0"/> - <line number="336" hits="0"/> - <line number="338" hits="0"/> - </lines> - </class> - <class name="Eq02.py" filename="Eq02.py" complexity="0" line-rate="0.9604" branch-rate="0"> - <methods/> - <lines> - <line number="8" hits="1"/> - <line number="9" hits="1"/> - <line number="10" hits="1"/> - <line number="11" hits="1"/> - <line number="12" hits="1"/> - <line number="13" hits="1"/> - <line number="14" hits="1"/> - <line number="15" hits="1"/> - <line number="16" hits="1"/> - <line number="19" hits="1"/> - <line number="93" hits="1"/> - <line number="94" hits="0"/> - <line number="96" hits="1"/> - <line number="97" hits="1"/> - <line number="100" hits="1"/> - <line number="101" hits="1"/> - <line number="103" hits="1"/> - <line number="104" hits="1"/> - <line number="107" hits="1"/> - <line number="108" hits="1"/> - <line number="110" hits="1"/> - <line number="113" hits="1"/> - <line number="116" hits="1"/> - <line number="117" hits="1"/> - <line number="120" hits="1"/> - <line number="121" hits="1"/> - <line number="122" hits="1"/> - <line number="125" hits="1"/> - <line number="126" hits="1"/> - <line number="129" hits="1"/> - <line number="130" hits="1"/> - <line number="131" hits="1"/> - <line number="132" hits="1"/> - <line number="133" hits="1"/> - <line number="134" hits="1"/> - <line number="137" hits="1"/> - <line number="138" hits="1"/> - <line number="139" hits="1"/> - <line number="140" hits="1"/> - <line number="141" hits="1"/> - <line number="142" hits="1"/> - <line number="146" hits="1"/> - <line number="147" hits="1"/> - <line number="148" hits="1"/> - <line number="149" hits="1"/> - <line number="151" hits="1"/> - <line number="152" hits="1"/> - <line number="156" hits="1"/> - <line number="158" hits="1"/> - <line number="159" hits="1"/> - <line number="160" hits="1"/> - <line number="161" hits="1"/> - <line number="162" hits="1"/> - <line number="163" hits="1"/> - <line number="164" hits="1"/> - <line number="166" hits="1"/> - <line number="167" hits="1"/> - <line number="168" hits="1"/> - <line number="169" hits="1"/> - <line number="170" hits="1"/> - <line number="171" hits="1"/> - <line number="172" hits="1"/> - <line number="176" hits="1"/> - <line number="178" hits="1"/> - <line number="179" hits="1"/> - <line number="182" hits="1"/> - <line number="183" hits="1"/> - <line number="186" hits="1"/> - <line number="187" hits="1"/> - <line number="189" hits="1"/> - <line number="196" hits="1"/> - <line number="199" hits="1"/> - <line number="202" hits="1"/> - <line number="203" hits="1"/> - <line number="204" hits="1"/> - <line number="205" hits="1"/> - <line number="206" hits="1"/> - <line number="208" hits="0"/> - <line number="209" hits="0"/> - <line number="211" hits="0"/> - <line number="212" hits="1"/> - <line number="213" hits="1"/> - <line number="216" hits="1"/> - <line number="217" hits="1"/> - <line number="218" hits="1"/> - <line number="219" hits="1"/> - <line number="222" hits="1"/> - <line number="225" hits="1"/> - <line number="226" hits="1"/> - <line number="227" hits="1"/> - <line number="228" hits="1"/> - <line number="231" hits="1"/> - <line number="232" hits="1"/> - <line number="234" hits="1"/> - <line number="235" hits="1"/> - <line number="237" hits="1"/> - <line number="238" hits="1"/> - <line number="239" hits="1"/> - <line number="240" hits="1"/> - <line number="241" hits="1"/> - <line number="243" hits="1"/> - </lines> - </class> - <class name="Eq04.py" filename="Eq04.py" complexity="0" line-rate="0.9558" branch-rate="0"> - <methods/> - <lines> - <line number="8" hits="1"/> - <line number="9" hits="1"/> - <line number="10" hits="1"/> - <line number="11" hits="1"/> - <line number="12" hits="1"/> - <line number="13" hits="1"/> - <line number="14" hits="1"/> - <line number="15" hits="1"/> - <line number="16" hits="1"/> - <line number="19" hits="1"/> - <line number="89" hits="1"/> - <line number="90" hits="1"/> - <line number="93" hits="1"/> - <line number="94" hits="1"/> - <line number="96" hits="1"/> - <line number="97" hits="1"/> - <line number="100" hits="1"/> - <line number="101" hits="1"/> - <line number="103" hits="1"/> - <line number="106" hits="1"/> - <line number="109" hits="1"/> - <line number="110" hits="1"/> - <line number="113" hits="1"/> - <line number="114" hits="1"/> - <line number="115" hits="1"/> - <line number="118" hits="1"/> - <line number="119" hits="1"/> - <line number="120" hits="1"/> - <line number="121" hits="1"/> - <line number="124" hits="1"/> - <line number="125" hits="1"/> - <line number="126" hits="1"/> - <line number="127" hits="1"/> - <line number="128" hits="1"/> - <line number="129" hits="1"/> - <line number="130" hits="1"/> - <line number="131" hits="1"/> - <line number="132" hits="1"/> - <line number="133" hits="1"/> - <line number="136" hits="1"/> - <line number="137" hits="1"/> - <line number="138" hits="1"/> - <line number="139" hits="1"/> - <line number="140" hits="1"/> - <line number="141" hits="1"/> - <line number="142" hits="1"/> - <line number="143" hits="1"/> - <line number="144" hits="1"/> - <line number="145" hits="1"/> - <line number="149" hits="1"/> - <line number="150" hits="1"/> - <line number="151" hits="1"/> - <line number="152" hits="1"/> - <line number="154" hits="1"/> - <line number="155" hits="1"/> - <line number="157" hits="1"/> - <line number="158" hits="1"/> - <line number="160" hits="1"/> - <line number="161" hits="1"/> - <line number="164" hits="1"/> - <line number="169" hits="1"/> - <line number="171" hits="1"/> - <line number="172" hits="1"/> - <line number="175" hits="1"/> - <line number="176" hits="1"/> - <line number="179" hits="1"/> - <line number="180" hits="1"/> - <line number="184" hits="1"/> - <line number="194" hits="1"/> - <line number="195" hits="1"/> - <line number="201" hits="1"/> - <line number="202" hits="1"/> - <line number="205" hits="1"/> - <line number="206" hits="1"/> - <line number="209" hits="1"/> - <line number="210" hits="1"/> - <line number="212" hits="1"/> - <line number="213" hits="1"/> - <line number="215" hits="1"/> - <line number="225" hits="1"/> - <line number="228" hits="1"/> - <line number="229" hits="1"/> - <line number="230" hits="1"/> - <line number="231" hits="1"/> - <line number="233" hits="1"/> - <line number="234" hits="1"/> - <line number="235" hits="1"/> - <line number="236" hits="1"/> - <line number="239" hits="1"/> - <line number="242" hits="1"/> - <line number="243" hits="1"/> - <line number="244" hits="1"/> - <line number="245" hits="1"/> - <line number="246" hits="1"/> - <line number="248" hits="0"/> - <line number="249" hits="0"/> - <line number="251" hits="0"/> - <line number="252" hits="1"/> - <line number="253" hits="1"/> - <line number="256" hits="1"/> - <line number="257" hits="1"/> - <line number="258" hits="1"/> - <line number="259" hits="1"/> - <line number="262" hits="1"/> - <line number="265" hits="1"/> - <line number="266" hits="1"/> - <line number="267" hits="1"/> - <line number="268" hits="1"/> - <line number="269" hits="1"/> - <line number="270" hits="1"/> - <line number="272" hits="1"/> - <line number="273" hits="0"/> - <line number="274" hits="0"/> - </lines> - </class> - <class name="EqN.py" filename="EqN.py" complexity="0" line-rate="0.9364" branch-rate="0"> - <methods/> - <lines> - <line number="8" hits="1"/> - <line number="9" hits="1"/> - <line number="10" hits="1"/> - <line number="11" hits="1"/> - <line number="12" hits="1"/> - <line number="13" hits="1"/> - <line number="14" hits="1"/> - <line number="15" hits="1"/> - <line number="16" hits="1"/> - <line number="18" hits="1"/> - <line number="82" hits="1"/> - <line number="83" hits="0"/> - <line number="84" hits="1"/> - <line number="85" hits="0"/> - <line number="87" hits="1"/> - <line number="88" hits="1"/> - <line number="91" hits="1"/> - <line number="92" hits="1"/> - <line number="94" hits="1"/> - <line number="95" hits="1"/> - <line number="98" hits="1"/> - <line number="99" hits="1"/> - <line number="101" hits="1"/> - <line number="104" hits="1"/> - <line number="107" hits="1"/> - <line number="108" hits="1"/> - <line number="109" hits="1"/> - <line number="110" hits="1"/> - <line number="113" hits="1"/> - <line number="114" hits="1"/> - <line number="115" hits="1"/> - <line number="117" hits="1"/> - <line number="118" hits="1"/> - <line number="119" hits="1"/> - <line number="120" hits="1"/> - <line number="123" hits="1"/> - <line number="124" hits="1"/> - <line number="127" hits="1"/> - <line number="128" hits="1"/> - <line number="129" hits="1"/> - <line number="130" hits="1"/> - <line number="131" hits="1"/> - <line number="132" hits="1"/> - <line number="135" hits="1"/> - <line number="136" hits="1"/> - <line number="137" hits="1"/> - <line number="138" hits="1"/> - <line number="139" hits="1"/> - <line number="140" hits="1"/> - <line number="143" hits="1"/> - <line number="144" hits="1"/> - <line number="145" hits="1"/> - <line number="146" hits="1"/> - <line number="148" hits="1"/> - <line number="149" hits="1"/> - <line number="152" hits="1"/> - <line number="155" hits="1"/> - <line number="156" hits="1"/> - <line number="157" hits="1"/> - <line number="158" hits="1"/> - <line number="159" hits="1"/> - <line number="160" hits="1"/> - <line number="161" hits="1"/> - <line number="162" hits="1"/> - <line number="165" hits="1"/> - <line number="167" hits="1"/> - <line number="168" hits="1"/> - <line number="169" hits="1"/> - <line number="170" hits="1"/> - <line number="171" hits="1"/> - <line number="174" hits="1"/> - <line number="175" hits="1"/> - <line number="176" hits="1"/> - <line number="177" hits="1"/> - <line number="180" hits="1"/> - <line number="187" hits="1"/> - <line number="188" hits="1"/> - <line number="191" hits="1"/> - <line number="192" hits="0"/> - <line number="194" hits="0"/> - <line number="195" hits="1"/> - <line number="198" hits="1"/> - <line number="199" hits="1"/> - <line number="202" hits="1"/> - <line number="203" hits="1"/> - <line number="204" hits="1"/> - <line number="205" hits="1"/> - <line number="208" hits="1"/> - <line number="211" hits="1"/> - <line number="212" hits="1"/> - <line number="213" hits="1"/> - <line number="214" hits="1"/> - <line number="215" hits="1"/> - <line number="217" hits="0"/> - <line number="218" hits="0"/> - <line number="220" hits="0"/> - <line number="221" hits="1"/> - <line number="222" hits="1"/> - <line number="225" hits="1"/> - <line number="226" hits="1"/> - <line number="227" hits="1"/> - <line number="228" hits="1"/> - <line number="231" hits="1"/> - <line number="232" hits="1"/> - <line number="233" hits="1"/> - <line number="234" hits="1"/> - <line number="235" hits="1"/> - <line number="236" hits="1"/> - <line number="237" hits="1"/> - <line number="238" hits="1"/> - </lines> - </class> - <class name="Helper_DoubleLayerCapacity.py" filename="Helper_DoubleLayerCapacity.py" complexity="0" line-rate="0.977" branch-rate="0"> - <methods/> - <lines> - <line number="4" hits="1"/> - <line number="5" hits="1"/> - <line number="9" hits="1"/> - <line number="23" hits="1"/> - <line number="25" hits="1"/> - <line number="41" hits="1"/> - <line number="43" hits="1"/> - <line number="59" hits="1"/> - <line number="61" hits="1"/> - <line number="77" hits="1"/> - <line number="78" hits="1"/> - <line number="79" hits="1"/> - <line number="80" hits="1"/> - <line number="82" hits="1"/> - <line number="108" hits="1"/> - <line number="109" hits="1"/> - <line number="110" hits="1"/> - <line number="112" hits="1"/> - <line number="144" hits="1"/> - <line number="145" hits="1"/> - <line number="146" hits="1"/> - <line number="147" hits="1"/> - <line number="148" hits="1"/> - <line number="150" hits="1"/> - <line number="188" hits="1"/> - <line number="189" hits="0"/> - <line number="190" hits="1"/> - <line number="191" hits="1"/> - <line number="192" hits="1"/> - <line number="194" hits="1"/> - <line number="195" hits="1"/> - <line number="196" hits="1"/> - <line number="199" hits="1"/> - <line number="200" hits="1"/> - <line number="202" hits="1"/> - <line number="203" hits="1"/> - <line number="204" hits="1"/> - <line number="206" hits="1"/> - <line number="207" hits="1"/> - <line number="208" hits="1"/> - <line number="210" hits="1"/> - <line number="212" hits="1"/> - <line number="214" hits="1"/> - <line number="215" hits="1"/> - <line number="217" hits="1"/> - <line number="218" hits="1"/> - <line number="221" hits="1"/> - <line number="265" hits="1"/> - <line number="266" hits="1"/> - <line number="267" hits="1"/> - <line number="268" hits="1"/> - <line number="269" hits="1"/> - <line number="273" hits="1"/> - <line number="311" hits="1"/> - <line number="312" hits="0"/> - <line number="313" hits="1"/> - <line number="314" hits="1"/> - <line number="315" hits="1"/> - <line number="317" hits="1"/> - <line number="318" hits="1"/> - <line number="319" hits="1"/> - <line number="321" hits="1"/> - <line number="323" hits="1"/> - <line number="324" hits="1"/> - <line number="326" hits="1"/> - <line number="328" hits="1"/> - <line number="329" hits="1"/> - <line number="331" hits="1"/> - <line number="333" hits="1"/> - <line number="334" hits="1"/> - <line number="335" hits="1"/> - <line number="337" hits="1"/> - <line number="338" hits="1"/> - <line number="340" hits="1"/> - <line number="341" hits="1"/> - <line number="343" hits="1"/> - <line number="344" hits="1"/> - <line number="346" hits="1"/> - <line number="348" hits="1"/> - <line number="350" hits="1"/> - <line number="355" hits="1"/> - <line number="403" hits="1"/> - <line number="404" hits="1"/> - <line number="406" hits="1"/> - <line number="407" hits="1"/> - <line number="408" hits="1"/> - <line number="409" hits="1"/> - </lines> - </class> - <class name="RefinedMesh1D.py" filename="RefinedMesh1D.py" complexity="0" line-rate="0.8519" branch-rate="0"> - <methods/> - <lines> - <line number="8" hits="1"/> - <line number="9" hits="1"/> - <line number="10" hits="1"/> - <line number="11" hits="1"/> - <line number="12" hits="1"/> - <line number="16" hits="1"/> - <line number="32" hits="1"/> - <line number="33" hits="1"/> - <line number="34" hits="1"/> - <line number="35" hits="1"/> - <line number="36" hits="1"/> - <line number="37" hits="1"/> - <line number="38" hits="0"/> - <line number="39" hits="0"/> - <line number="40" hits="0"/> - <line number="41" hits="0"/> - <line number="42" hits="1"/> - <line number="43" hits="1"/> - <line number="44" hits="1"/> - <line number="45" hits="1"/> - <line number="46" hits="1"/> - <line number="47" hits="1"/> - <line number="48" hits="1"/> - <line number="49" hits="1"/> - <line number="50" hits="1"/> - <line number="51" hits="1"/> - <line number="52" hits="1"/> - </lines> - </class> - <class name="__init__.py" filename="__init__.py" complexity="0" line-rate="1" branch-rate="0"> - <methods/> - <lines> - <line number="1" hits="1"/> - <line number="3" hits="1"/> - <line number="4" hits="1"/> - <line number="5" hits="1"/> - <line number="6" hits="1"/> - <line number="7" hits="1"/> - <line number="8" hits="1"/> - </lines> - </class> - </classes> - </package> - </packages> -</coverage>